Wall clock time and date at job start Tue Mar 31 2020 05:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00297 * 2 1 4 4 H 1.48491 * 109.47473 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47099 * 300.00549 * 3 2 1 6 6 H 1.48498 * 109.47119 * 59.99624 * 3 2 1 7 7 C 1.38817 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00292 * 157.93247 * 7 2 1 9 9 N 1.36943 * 119.99408 * 337.93451 * 7 2 1 10 10 C 1.46496 * 120.00274 * 324.92321 * 9 7 2 11 11 C 1.52997 * 109.47499 * 270.00442 * 10 9 7 12 12 C 1.52998 * 109.47232 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47170 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00070 * 179.97438 * 13 12 11 15 15 O 1.21281 * 120.00051 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99813 * 179.97438 * 14 13 12 17 17 C 1.53011 * 109.47101 * 180.02562 * 16 14 13 18 18 C 1.53043 * 113.15114 * 275.37512 * 17 16 14 19 19 S 1.81424 * 89.88816 * 211.85089 * 18 17 16 20 20 O 1.42099 * 112.75251 * 280.47428 * 19 18 17 21 21 O 1.42096 * 112.75204 * 136.73125 * 19 18 17 22 22 C 1.53034 * 113.15424 * 174.99763 * 17 16 14 23 23 C 1.46504 * 119.99489 * 144.93086 * 9 7 2 24 24 C 1.53000 * 117.49921 * 3.23472 * 23 9 7 25 25 C 1.52998 * 117.49703 * 294.57074 * 23 9 7 26 26 H 0.96995 * 119.99672 * 355.90991 * 1 2 3 27 27 H 1.09005 * 109.47045 * 30.00589 * 10 9 7 28 28 H 1.08998 * 109.47092 * 149.99943 * 10 9 7 29 29 H 1.09005 * 109.47091 * 300.00118 * 11 10 9 30 30 H 1.09004 * 109.46959 * 59.99639 * 11 10 9 31 31 H 1.09005 * 109.47181 * 300.00066 * 12 11 10 32 32 H 1.08992 * 109.47145 * 60.00006 * 12 11 10 33 33 H 0.96999 * 119.99950 * 359.97438 * 13 12 11 34 34 H 1.08993 * 109.47308 * 299.99674 * 16 14 13 35 35 H 1.08996 * 109.47340 * 60.00619 * 16 14 13 36 36 H 1.09004 * 112.49479 * 45.21127 * 17 16 14 37 37 H 1.09000 * 113.14662 * 327.11077 * 18 17 16 38 38 H 1.09003 * 113.14831 * 96.59223 * 18 17 16 39 39 H 1.08995 * 113.15246 * 263.40696 * 22 17 16 40 40 H 1.09007 * 113.14780 * 32.89316 * 22 17 16 41 41 H 1.09004 * 115.54877 * 148.90350 * 23 9 7 42 42 H 1.08998 * 117.50153 * 359.97438 * 24 23 9 43 43 H 1.08995 * 117.49708 * 145.02504 * 24 23 9 44 44 H 1.08995 * 117.49988 * 214.98174 * 25 23 9 45 45 H 1.08997 * 117.49880 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4007 -2.3448 0.4445 10 6 0.4457 -2.2813 1.5535 11 6 1.1887 -2.4675 2.8779 12 6 0.1913 -2.4005 4.0361 13 7 0.9029 -2.5781 5.3043 14 6 0.2228 -2.5551 6.4676 15 8 -0.9783 -2.3868 6.4647 16 6 0.9548 -2.7384 7.7721 17 6 -0.0427 -2.6713 8.9305 18 6 -0.3399 -1.2409 9.3864 19 16 -0.5807 -1.8357 11.0834 20 8 -1.8597 -2.4215 11.2841 21 8 0.0337 -0.9970 12.0520 22 6 0.5933 -2.9687 10.2902 23 6 1.7039 -3.6309 -0.1884 24 6 2.7655 -3.6431 -1.2902 25 6 1.2873 -3.8149 -1.6490 26 1 -0.4849 0.8379 0.0599 27 1 -0.0520 -1.3115 1.5493 28 1 -0.2968 -3.0711 1.4393 29 1 1.6864 -3.4373 2.8821 30 1 1.9312 -1.6776 2.9921 31 1 -0.3060 -1.4305 4.0317 32 1 -0.5514 -3.1900 3.9221 33 1 1.8636 -2.7123 5.3067 34 1 1.4516 -3.7085 7.7768 35 1 1.6978 -1.9491 7.8859 36 1 -0.9422 -3.2570 8.7407 37 1 0.5147 -0.5722 9.2839 38 1 -1.2472 -0.8298 8.9436 39 1 0.4679 -4.0048 10.6045 40 1 1.6279 -2.6330 10.3620 41 1 1.6465 -4.5015 0.4649 42 1 3.2380 -2.6944 -1.5444 43 1 3.4061 -4.5220 -1.3619 44 1 0.9562 -4.8067 -1.9568 45 1 0.7872 -2.9795 -2.1389 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689995717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:48 Heat of formation + Delta-G solvation = -70.174777 kcal Electronic energy + Delta-G solvation = -25609.615130 eV Core-core repulsion = 21755.611209 eV Total energy + Delta-G solvation = -3854.003921 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.83919 -38.88257 -38.38800 -37.84364 -37.00857 -36.52541 -35.23823 -33.35632 -31.48180 -29.86662 -27.48584 -27.04132 -25.13193 -23.06839 -22.53814 -22.29252 -21.50865 -20.92671 -19.73111 -18.27472 -18.16306 -17.53196 -17.30479 -17.25622 -17.00452 -16.70796 -16.57212 -16.25887 -15.88393 -15.63176 -15.04686 -14.62099 -14.31313 -14.11211 -13.88772 -13.81291 -13.66450 -13.39245 -13.26750 -13.23692 -13.12475 -12.75492 -12.60229 -12.44694 -12.27229 -12.24579 -12.05655 -11.98579 -11.82282 -11.51645 -11.43552 -11.28930 -11.17186 -10.92915 -10.77880 -10.47222 -10.04148 -8.53547 -7.79167 -5.44606 -0.73254 1.15819 1.42845 1.47581 1.56318 1.71655 2.25457 2.49942 2.81807 3.12994 3.15334 3.28935 3.41673 3.52426 3.67779 3.97121 4.07864 4.19588 4.26195 4.32647 4.36658 4.44639 4.48058 4.56245 4.60261 4.61805 4.73509 4.77832 4.81690 4.95066 4.98249 4.99392 5.08689 5.14781 5.18947 5.37044 5.48486 5.51954 5.55386 5.69510 5.86919 6.45441 6.64651 7.15591 7.33844 7.86727 8.35828 9.11328 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018487 B = 0.002119 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.181993 B =13211.669669 C =14073.983726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.040 4.040 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.298 1.298 6 H -0.289 1.289 7 C -0.253 4.253 8 H 0.063 0.937 9 N -0.569 5.569 10 C 0.147 3.853 11 C -0.120 4.120 12 C 0.133 3.867 13 N -0.718 5.718 14 C 0.499 3.501 15 O -0.590 6.590 16 C -0.111 4.111 17 C -0.067 4.067 18 C -0.599 4.599 19 S 2.422 3.578 20 O -0.960 6.960 21 O -0.964 6.964 22 C -0.562 4.562 23 C 0.103 3.897 24 C -0.180 4.180 25 C -0.225 4.225 26 H 0.249 0.751 27 H 0.066 0.934 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.057 0.943 33 H 0.416 0.584 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.163 0.837 38 H 0.113 0.887 39 H 0.149 0.851 40 H 0.177 0.823 41 H 0.115 0.885 42 H 0.074 0.926 43 H 0.113 0.887 44 H 0.100 0.900 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.701 -8.940 19.975 22.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.237 4.237 3 Si 0.779 3.221 4 H -0.188 1.188 5 H -0.225 1.225 6 H -0.216 1.216 7 C -0.384 4.384 8 H 0.081 0.919 9 N -0.286 5.286 10 C 0.020 3.980 11 C -0.160 4.160 12 C 0.008 3.992 13 N -0.370 5.370 14 C 0.288 3.712 15 O -0.471 6.471 16 C -0.152 4.152 17 C -0.088 4.088 18 C -0.728 4.728 19 S 2.609 3.391 20 O -0.957 6.957 21 O -0.961 6.961 22 C -0.693 4.693 23 C -0.005 4.005 24 C -0.218 4.218 25 C -0.265 4.265 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.253 0.747 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.123 0.877 37 H 0.181 0.819 38 H 0.131 0.869 39 H 0.167 0.833 40 H 0.194 0.806 41 H 0.133 0.867 42 H 0.092 0.908 43 H 0.131 0.869 44 H 0.119 0.881 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.134 -8.421 21.002 23.202 hybrid contribution 0.563 1.076 -1.689 2.080 sum 5.697 -7.345 19.313 21.434 Atomic orbital electron populations 1.70184 1.06779 1.26099 1.52906 1.25773 0.95533 1.01413 1.00958 0.85472 0.79204 0.80695 0.76680 1.18848 1.22496 1.21570 1.19272 0.94248 0.86486 1.38378 0.91929 1.43640 1.49153 1.01977 1.33860 1.20769 0.90740 1.01363 0.85086 1.22058 0.98086 1.01814 0.94063 1.21053 0.95122 1.00105 0.82937 1.46026 1.12439 1.73137 1.05413 1.21521 0.87699 0.75197 0.86827 1.90701 1.17071 1.51040 1.88299 1.21609 0.98109 1.07926 0.87544 1.21273 0.99764 0.93751 0.94022 1.31165 1.11972 1.05970 1.23686 1.07796 0.76131 0.78839 0.76355 1.93662 1.39278 1.76514 1.86269 1.93589 1.77388 1.65469 1.59647 1.30834 1.16768 1.17538 1.04188 1.21566 1.01435 0.89857 0.87677 1.23043 0.91616 1.02323 1.04833 1.23290 0.98139 1.00776 1.04336 0.94172 0.91586 0.95421 0.91022 0.92710 0.94270 0.92486 0.74690 0.84595 0.85137 0.87695 0.81862 0.86864 0.83314 0.80571 0.86704 0.90760 0.86930 0.88130 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.35 11.33 21.65 0.25 -52.10 16 2 C -0.04 -2.12 4.96 84.86 0.42 -1.70 16 3 Si 0.95 43.23 29.61 68.60 2.03 45.26 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.25 -13.07 8.63 84.03 0.73 -12.34 16 8 H 0.06 3.23 6.55 -2.91 -0.02 3.21 16 9 N -0.57 -26.48 2.78 -678.03 -1.88 -28.36 16 10 C 0.15 6.40 5.34 86.38 0.46 6.87 16 11 C -0.12 -4.00 5.65 30.59 0.17 -3.83 16 12 C 0.13 4.07 5.67 86.38 0.49 4.56 16 13 N -0.72 -15.94 5.56 -463.07 -2.57 -18.51 16 14 C 0.50 11.23 7.83 87.66 0.69 11.92 16 15 O -0.59 -19.24 15.78 -3.03 -0.05 -19.29 16 16 C -0.11 -1.15 5.48 29.85 0.16 -0.99 16 17 C -0.07 -0.78 2.80 -10.76 -0.03 -0.81 16 18 C -0.60 -7.05 7.49 72.00 0.54 -6.51 16 19 S 2.42 28.72 7.55 -56.49 -0.43 28.29 16 20 O -0.96 -20.11 18.18 -127.88 -2.32 -22.43 16 21 O -0.96 -17.68 18.18 -127.88 -2.32 -20.00 16 22 C -0.56 -2.48 7.49 71.99 0.54 -1.94 16 23 C 0.10 4.03 6.56 44.99 0.30 4.32 16 24 C -0.18 -6.46 9.80 30.62 0.30 -6.16 16 25 C -0.22 -8.68 10.36 30.62 0.32 -8.36 16 26 H 0.25 13.89 8.32 -92.71 -0.77 13.12 16 27 H 0.07 3.43 5.36 -2.38 -0.01 3.41 16 28 H 0.03 1.17 8.07 -2.39 -0.02 1.15 16 29 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.05 1.95 8.14 -2.38 -0.02 1.94 16 31 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.42 6.38 8.47 -92.71 -0.79 5.60 16 34 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.13 0.65 7.89 -2.39 -0.02 0.63 16 36 H 0.10 1.65 7.71 -2.38 -0.02 1.64 16 37 H 0.16 1.17 7.94 -2.39 -0.02 1.15 16 38 H 0.11 1.77 8.14 -2.39 -0.02 1.76 16 39 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.18 -0.20 8.12 -2.38 -0.02 -0.22 16 41 H 0.12 3.81 8.14 -2.38 -0.02 3.79 16 42 H 0.07 3.02 6.37 -2.39 -0.02 3.00 16 43 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 44 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 45 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -81.41 382.70 -2.02 -83.42 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.21 Total: 18.70 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 5.08 Total: -14.97 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -4.21 Total: -98.98 kcal Atomic # 8 Polarization: -57.03 SS G_CDS: -4.70 Total: -61.73 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 28.72 SS G_CDS: -0.43 Total: 28.29 kcal Total: -81.41 -2.02 -83.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689995717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.249 kcal (2) G-P(sol) polarization free energy of solvation -81.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds