Wall clock time and date at job start Tue Mar 31 2020 05:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47534 * 2 1 4 4 C 1.50705 * 109.47017 * 239.99640 * 2 1 3 5 5 O 1.21231 * 119.99898 * 239.99849 * 4 2 1 6 6 N 1.34776 * 119.99663 * 60.00352 * 4 2 1 7 7 C 1.34782 * 119.99950 * 179.97438 * 6 4 2 8 8 N 1.34773 * 120.00345 * 179.97438 * 7 6 4 9 9 O 1.21545 * 119.99624 * 0.02562 * 7 6 4 10 10 N 1.46897 * 109.47213 * 119.99902 * 2 1 3 11 11 C 1.47962 * 111.00037 * 294.99933 * 10 2 1 12 12 C 1.53935 * 86.30001 * 222.47236 * 11 10 2 13 13 N 1.46503 * 113.73157 * 269.30084 * 12 11 10 14 14 C 1.34774 * 120.00233 * 204.99893 * 13 12 11 15 15 O 1.21284 * 119.99840 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00221 * 180.02562 * 14 13 12 17 17 S 1.81003 * 109.47253 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99872 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00486 * 359.97438 * 18 17 16 20 20 C 1.38798 * 120.00139 * 180.02562 * 18 17 16 21 21 N 1.31636 * 119.99665 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00618 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47401 * 89.99266 * 22 20 18 24 24 H 1.48498 * 109.47476 * 210.00117 * 22 20 18 25 25 H 1.48505 * 109.46528 * 329.99927 * 22 20 18 26 26 C 1.48187 * 111.07743 * 195.70871 * 10 2 1 27 27 H 1.09006 * 109.46939 * 60.00170 * 1 2 3 28 28 H 1.09001 * 109.47534 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47174 * 300.00479 * 1 2 3 30 30 H 0.96999 * 120.00600 * 359.97438 * 6 4 2 31 31 H 0.97007 * 119.99309 * 359.97438 * 8 7 6 32 32 H 0.96993 * 120.00431 * 180.02562 * 8 7 6 33 33 H 1.09002 * 113.76087 * 108.09701 * 11 10 2 34 34 H 1.09005 * 113.75858 * 336.84163 * 11 10 2 35 35 H 1.09000 * 113.73432 * 138.02824 * 12 11 10 36 36 H 0.97006 * 119.99815 * 25.00660 * 13 12 11 37 37 H 1.09007 * 109.47112 * 300.00548 * 16 14 13 38 38 H 1.09003 * 109.47007 * 60.00266 * 16 14 13 39 39 H 0.97003 * 119.99912 * 179.97438 * 21 20 18 40 40 H 1.09005 * 113.65869 * 23.13541 * 26 10 2 41 41 H 1.09002 * 113.92722 * 251.82174 * 26 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7293 -1.6962 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1563 -0.8851 -3.5551 8 7 1.8304 -0.4250 -4.7792 9 8 2.8550 -1.8734 -3.4435 10 7 2.0196 -0.6925 1.1994 11 6 1.6460 0.0445 2.4268 12 6 3.0718 -0.2574 2.9224 13 7 3.1806 -1.5069 3.6795 14 6 4.1731 -1.6666 4.5772 15 8 4.9759 -0.7758 4.7586 16 6 4.2854 -2.9521 5.3556 17 16 5.7076 -2.8596 6.4714 18 6 5.6035 -4.4456 7.2319 19 1 4.8154 -5.1285 6.9510 20 6 6.5338 -4.8169 8.1927 21 7 7.4941 -3.9843 8.5355 22 14 6.4240 -6.4985 8.9986 23 1 7.2157 -7.4775 8.2111 24 1 6.9639 -6.4219 10.3798 25 1 5.0047 -6.9332 9.0453 26 6 3.4522 -0.3976 1.4375 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.1488 0.5384 -2.5436 31 1 1.2718 0.3631 -4.8681 32 1 2.1536 -0.8823 -5.5711 33 1 0.8655 -0.4428 3.0113 34 1 1.4539 1.1046 2.2613 35 1 3.5509 0.5855 3.4204 36 1 2.5384 -2.2193 3.5346 37 1 3.3766 -3.1049 5.9378 38 1 4.4187 -3.7847 4.6648 39 1 8.1440 -4.2437 9.2073 40 1 3.7891 0.5330 0.9806 41 1 4.1165 -1.2370 1.2316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692171439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:00 Heat of formation + Delta-G solvation = -54.613020 kcal Electronic energy + Delta-G solvation = -25210.383037 eV Core-core repulsion = 21253.513581 eV Total energy + Delta-G solvation = -3956.869456 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.70263 -40.55916 -38.82941 -38.03211 -35.17710 -34.24724 -33.76522 -32.38241 -32.22981 -29.22707 -27.15721 -26.19402 -25.41716 -25.07455 -22.31839 -20.82812 -20.79077 -19.83695 -19.19432 -18.13622 -17.76186 -16.85809 -16.59229 -16.37596 -16.22459 -15.75978 -15.34840 -15.19367 -14.78242 -14.75616 -14.47347 -14.19257 -13.78771 -13.38245 -13.20214 -13.00883 -12.82494 -12.75879 -12.50272 -12.12343 -11.85218 -11.37875 -11.26880 -11.09218 -11.01684 -10.97196 -10.70878 -10.51361 -10.27901 -9.96955 -9.76681 -9.39274 -9.17453 -9.02125 -8.84296 -8.18672 -6.44632 -6.17000 -3.87016 1.73048 1.97949 2.86565 3.02209 3.08855 3.26733 3.30603 3.34389 3.44201 3.64610 3.78972 4.02083 4.25149 4.26365 4.39191 4.47856 4.52733 4.92233 4.99848 5.09850 5.16833 5.18217 5.18809 5.36352 5.48924 5.53915 5.56408 5.70978 5.85659 5.92165 5.96069 5.99668 6.22015 6.24970 6.51366 6.70826 6.95364 7.64807 7.66152 7.78022 7.96242 8.40377 8.65000 9.28485 10.90439 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.022206 B = 0.002038 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.638434 B =13737.357398 C =14351.812141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.032 3.968 3 H 0.080 0.920 4 C 0.518 3.482 5 O -0.437 6.437 6 N -0.693 5.693 7 C 0.695 3.305 8 N -0.859 5.859 9 O -0.531 6.531 10 N -0.456 5.456 11 C -0.004 4.004 12 C 0.125 3.875 13 N -0.713 5.713 14 C 0.536 3.464 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.007 4.007 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.407 0.593 31 H 0.398 0.602 32 H 0.420 0.580 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.405 0.595 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.268 0.732 40 H 0.075 0.925 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.352 14.908 -24.807 35.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 H 0.098 0.902 4 C 0.302 3.698 5 O -0.302 6.302 6 N -0.361 5.361 7 C 0.393 3.607 8 N -0.430 5.430 9 O -0.402 6.402 10 N -0.180 5.180 11 C -0.133 4.133 12 C 0.017 3.983 13 N -0.367 5.367 14 C 0.322 3.678 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.504 5.504 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.137 4.137 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.242 0.758 31 H 0.227 0.773 32 H 0.253 0.747 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.240 0.760 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.016 14.254 -24.110 33.302 hybrid contribution -1.634 -0.817 -0.496 1.893 sum -19.650 13.437 -24.606 34.237 Atomic orbital electron populations 1.21806 0.91383 1.04022 1.02944 1.22256 0.98036 0.96862 0.90908 0.90217 1.20701 0.80657 0.85257 0.83197 1.90886 1.31361 1.22528 1.85377 1.44187 1.52890 1.32363 1.06665 1.16175 0.80584 0.83103 0.80842 1.43093 1.58296 1.34935 1.06653 1.91156 1.38734 1.25125 1.85177 1.68662 1.06259 1.44002 0.99062 1.24427 0.98625 0.98495 0.91736 1.22114 0.95294 0.89407 0.91510 1.45605 1.32325 1.17486 1.41264 1.20356 0.79860 0.89000 0.78561 1.90693 1.40411 1.42807 1.65370 1.23528 1.07156 0.96968 1.02700 1.85361 1.30373 1.22882 1.44765 1.22877 1.17222 1.01538 1.26609 0.90893 1.24994 0.94531 0.98174 0.95940 1.70024 1.14447 1.35314 1.30577 0.86163 0.78472 0.82424 0.78414 1.20273 1.20796 1.19697 1.24578 0.91024 1.02121 0.95974 0.91705 0.90780 0.90661 0.75768 0.77338 0.74728 0.88226 0.89851 0.87327 0.76014 0.89134 0.89032 0.92235 0.90669 0.88015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.57 9.07 37.15 0.34 -0.23 16 2 C 0.03 0.21 2.08 -68.87 -0.14 0.07 16 3 H 0.08 0.34 7.68 -51.93 -0.40 -0.06 16 4 C 0.52 5.11 6.95 -10.98 -0.08 5.03 16 5 O -0.44 -7.00 14.26 -18.20 -0.26 -7.26 16 6 N -0.69 -4.23 5.13 -15.78 -0.08 -4.31 16 7 C 0.69 6.12 8.78 -86.92 -0.76 5.36 16 8 N -0.86 -2.76 8.88 27.63 0.25 -2.51 16 9 O -0.53 -8.21 15.58 -18.48 -0.29 -8.50 16 10 N -0.46 -4.31 5.61 -230.88 -1.30 -5.61 16 11 C 0.00 -0.03 6.58 -2.77 -0.02 -0.04 16 12 C 0.12 1.43 4.43 -69.33 -0.31 1.12 16 13 N -0.71 -9.94 5.36 -54.71 -0.29 -10.23 16 14 C 0.54 10.19 7.85 -10.99 -0.09 10.10 16 15 O -0.52 -11.80 15.46 5.55 0.09 -11.71 16 16 C -0.15 -3.18 6.16 36.00 0.22 -2.96 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.53 -15.53 9.50 30.94 0.29 -15.24 16 19 H 0.07 2.01 7.80 -52.49 -0.41 1.61 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.58 13.22 55.49 0.73 -25.85 16 22 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 C -0.01 -0.08 6.92 -2.65 -0.02 -0.10 16 27 H 0.06 0.08 7.56 -51.93 -0.39 -0.32 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.23 7.33 -51.93 -0.38 -0.15 16 30 H 0.41 0.38 8.13 -40.82 -0.33 0.05 16 31 H 0.40 -0.31 8.84 -40.82 -0.36 -0.67 16 32 H 0.42 1.14 8.93 -40.82 -0.36 0.78 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.42 7.85 -51.93 -0.41 0.01 16 35 H 0.11 1.36 7.46 -51.93 -0.39 0.97 16 36 H 0.40 4.86 8.75 -40.82 -0.36 4.51 16 37 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 38 H 0.09 1.81 8.14 -51.92 -0.42 1.38 16 39 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.08 0.70 7.70 -51.93 -0.40 0.30 16 41 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 365.83 15.07 5.51 5.51 Total: -1.00 -43.24 365.83 -8.97 -52.21 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.44 Total: 0.16 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -0.66 Total: 5.13 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.69 Total: -48.51 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.46 Total: -27.47 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -43.24 -8.97 -52.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692171439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.399 kcal (2) G-P(sol) polarization free energy of solvation -43.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds