Wall clock time and date at job start Tue Mar 31 2020 06:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99602 * 2 1 4 4 H 1.48501 * 109.46715 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47087 * 300.00230 * 3 2 1 6 6 H 1.48498 * 109.47271 * 60.00343 * 3 2 1 7 7 C 1.38809 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99607 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00327 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00313 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47593 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.46623 * 294.99847 * 11 10 9 13 13 N 1.46497 * 109.47066 * 54.99302 * 11 10 9 14 14 C 1.34779 * 120.00375 * 205.00029 * 13 11 10 15 15 O 1.21275 * 119.99688 * 0.02562 * 14 13 11 16 16 C 1.50696 * 119.99755 * 180.02562 * 14 13 11 17 17 C 1.53005 * 109.46662 * 180.02562 * 16 14 13 18 18 H 1.09005 * 110.28379 * 307.11519 * 17 16 14 19 19 C 1.54163 * 110.31883 * 185.00371 * 17 16 14 20 20 C 1.53880 * 108.70514 * 213.18806 * 19 17 16 21 21 C 1.55048 * 106.62297 * 47.17621 * 20 19 17 22 22 S 1.83291 * 102.74253 * 317.47283 * 21 20 19 23 23 O 1.42101 * 109.35355 * 136.70586 * 22 21 20 24 24 O 1.42098 * 109.35437 * 269.90955 * 22 21 20 25 25 C 1.52995 * 109.47236 * 174.99699 * 11 10 9 26 26 C 1.53000 * 117.49801 * 248.74531 * 25 11 10 27 27 C 1.53001 * 117.49523 * 180.08457 * 25 11 10 28 28 H 0.97003 * 120.00061 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00325 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.47048 * 59.99609 * 10 9 7 31 31 H 1.09004 * 109.47028 * 299.99838 * 10 9 7 32 32 H 0.97006 * 120.00013 * 25.00464 * 13 11 10 33 33 H 1.09000 * 109.47437 * 60.00654 * 16 14 13 34 34 H 1.08995 * 109.47812 * 299.99608 * 16 14 13 35 35 H 1.09002 * 109.64715 * 93.33569 * 19 17 16 36 36 H 1.08995 * 109.53799 * 332.97073 * 19 17 16 37 37 H 1.09004 * 110.02530 * 287.88899 * 20 19 17 38 38 H 1.08997 * 110.06843 * 166.49177 * 20 19 17 39 39 H 1.09002 * 110.78869 * 75.83925 * 21 20 19 40 40 H 1.09006 * 110.79125 * 199.11093 * 21 20 19 41 41 H 1.09003 * 115.54896 * 34.42092 * 25 11 10 42 42 H 1.08998 * 117.50044 * 0.02562 * 26 25 11 43 43 H 1.08994 * 117.49249 * 145.02529 * 26 25 11 44 44 H 1.09008 * 117.49673 * 214.97761 * 27 25 11 45 45 H 1.08997 * 117.50264 * 359.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8198 0.0001 12 1 0.4981 -4.8135 0.9318 13 7 0.1439 -4.6763 -1.1309 14 6 -1.0805 -5.2372 -1.0790 15 8 -1.4208 -5.8603 -0.0957 16 6 -2.0266 -5.0901 -2.2427 17 6 -3.3374 -5.8143 -1.9289 18 1 -3.1384 -6.8437 -1.6306 19 6 -4.2726 -5.7832 -3.1540 20 6 -5.7288 -5.7130 -2.6616 21 6 -5.7761 -4.6100 -1.5729 22 16 -4.2527 -4.9311 -0.6056 23 8 -3.6054 -3.6979 -0.3234 24 8 -4.5467 -5.8363 0.4495 25 6 1.8248 -6.1412 -0.1257 26 6 1.6661 -6.9263 -1.4292 27 6 1.0019 -7.4309 -0.1457 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 0.0002 30 1 2.6848 -3.7145 0.8894 31 1 2.6848 -3.7145 -0.8906 32 1 0.4160 -4.1777 -1.9172 33 1 -1.5756 -5.5246 -3.1348 34 1 -2.2284 -4.0330 -2.4156 35 1 -4.1296 -6.6864 -3.7473 36 1 -4.0486 -4.9065 -3.7615 37 1 -6.0253 -6.6713 -2.2352 38 1 -6.3906 -5.4512 -3.4871 39 1 -5.7457 -3.6186 -2.0249 40 1 -6.6620 -4.7213 -0.9475 41 1 2.7974 -6.1722 0.3655 42 1 1.0201 -6.5013 -2.1974 43 1 2.5343 -7.4743 -1.7954 44 1 1.4334 -8.3107 0.3319 45 1 -0.0814 -7.3380 -0.0688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699586909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:20 Heat of formation + Delta-G solvation = -66.535881 kcal Electronic energy + Delta-G solvation = -27678.339437 eV Core-core repulsion = 23824.493310 eV Total energy + Delta-G solvation = -3853.846127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.14234 -37.56889 -36.87666 -36.59540 -35.73791 -34.86423 -33.30645 -32.35916 -31.06538 -28.45746 -27.16946 -24.42229 -23.85850 -22.24133 -21.62980 -21.44114 -20.67345 -19.65987 -18.56658 -17.34727 -17.32163 -16.82050 -16.50336 -15.96018 -15.85424 -15.33661 -14.78128 -14.64821 -14.23080 -14.19555 -14.00618 -13.58652 -13.35345 -13.16348 -12.92034 -12.60212 -12.33882 -12.07988 -11.99836 -11.95078 -11.84907 -11.74571 -11.59731 -11.30683 -11.26965 -11.16063 -10.85455 -10.80383 -10.59848 -10.23322 -10.13951 -10.04484 -9.75839 -9.65133 -9.53897 -8.87688 -8.67325 -6.90622 -5.70701 -3.02131 0.07385 2.61287 2.78713 3.29939 3.45374 3.50816 3.53407 3.64530 3.92843 4.06268 4.21970 4.30719 4.45271 4.51683 4.59801 4.70540 4.89607 4.92789 5.08569 5.18199 5.19510 5.20853 5.23083 5.35514 5.45277 5.53703 5.56967 5.59346 5.61513 5.71628 5.79021 5.83034 6.04397 6.06238 6.23984 6.34311 6.50620 6.52882 6.71984 6.92831 7.73313 7.76832 8.41666 8.45793 9.57376 10.13621 10.49134 11.50659 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.010935 B = 0.004314 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.909205 B = 6489.222674 C = 8295.659655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.149 3.851 11 C 0.165 3.835 12 H 0.094 0.906 13 N -0.699 5.699 14 C 0.512 3.488 15 O -0.549 6.549 16 C -0.122 4.122 17 C -0.536 4.536 18 H 0.149 0.851 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.608 4.608 22 S 2.389 3.611 23 O -0.912 6.912 24 O -0.928 6.928 25 C -0.159 4.159 26 C -0.178 4.178 27 C -0.188 4.188 28 H 0.255 0.745 29 H 0.388 0.612 30 H 0.034 0.966 31 H 0.026 0.974 32 H 0.407 0.593 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.005 -15.678 -10.579 20.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.020 3.980 11 C 0.060 3.940 12 H 0.112 0.888 13 N -0.349 5.349 14 C 0.298 3.702 15 O -0.429 6.429 16 C -0.163 4.163 17 C -0.645 4.645 18 H 0.167 0.833 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.736 4.736 22 S 2.569 3.431 23 O -0.909 6.909 24 O -0.925 6.925 25 C -0.179 4.179 26 C -0.215 4.215 27 C -0.225 4.225 28 H 0.065 0.935 29 H 0.223 0.777 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.242 0.758 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.128 0.872 42 H 0.109 0.891 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.848 -15.745 -8.939 20.152 hybrid contribution 0.144 1.021 -1.145 1.541 sum -8.704 -14.724 -10.084 19.855 Atomic orbital electron populations 1.69710 1.04973 1.25540 1.57028 1.24772 0.95479 0.97638 1.02848 0.86151 0.78741 0.84297 0.77152 1.20612 1.21932 1.21882 1.19224 0.90978 0.84050 1.43353 0.91162 1.42393 1.06180 0.99650 1.89541 1.20898 0.92979 0.85160 0.98920 1.20819 0.90228 0.92870 0.90045 0.88840 1.45860 1.14326 1.53748 1.20932 1.20445 0.82700 0.78591 0.88432 1.90671 1.76150 1.42262 1.33817 1.21393 0.92350 1.03503 0.99045 1.30151 1.05418 1.14084 1.14844 0.83347 1.22046 0.91616 1.05300 0.96182 1.22173 0.97366 0.97641 0.98562 1.30835 1.21804 1.07904 1.13060 1.09493 0.78638 0.76926 0.78040 1.93708 1.72486 1.41876 1.82813 1.93590 1.83685 1.65096 1.50109 1.22694 1.00809 0.92487 1.01881 1.22880 1.02953 1.04105 0.91605 1.23358 1.01663 0.96839 1.00634 0.93486 0.77697 0.94878 0.95651 0.75765 0.87041 0.86589 0.88878 0.89399 0.89632 0.88609 0.84451 0.84853 0.87231 0.89121 0.89547 0.89737 0.86460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.50 13.06 55.49 0.72 -27.78 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.54 5.43 -59.91 -0.33 -18.87 16 10 C 0.15 2.95 5.80 -4.04 -0.02 2.92 16 11 C 0.17 2.86 2.59 -67.93 -0.18 2.68 16 12 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 13 N -0.70 -11.06 3.05 -53.81 -0.16 -11.22 16 14 C 0.51 8.02 6.04 -10.99 -0.07 7.96 16 15 O -0.55 -10.16 12.14 5.56 0.07 -10.09 16 16 C -0.12 -1.36 4.73 -27.88 -0.13 -1.49 16 17 C -0.54 -5.37 2.78 -26.12 -0.07 -5.44 16 18 H 0.15 1.45 7.91 -51.93 -0.41 1.04 16 19 C -0.11 -0.69 5.95 -25.67 -0.15 -0.84 16 20 C -0.12 -0.71 6.48 -25.19 -0.16 -0.88 16 21 C -0.61 -5.08 7.29 38.24 0.28 -4.80 16 22 S 2.39 32.78 4.96 -107.50 -0.53 32.25 16 23 O -0.91 -17.04 16.65 -57.71 -0.96 -18.01 16 24 O -0.93 -16.11 18.15 -57.71 -1.05 -17.15 16 25 C -0.16 -2.28 5.71 -90.62 -0.52 -2.80 16 26 C -0.18 -2.22 9.74 -26.69 -0.26 -2.48 16 27 C -0.19 -2.61 9.82 -26.69 -0.26 -2.87 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 29 H 0.39 10.63 7.33 -40.82 -0.30 10.34 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.41 5.95 8.60 -40.82 -0.35 5.60 16 33 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.12 1.29 7.74 -51.93 -0.40 0.89 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.43 7.85 -51.93 -0.41 0.03 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.14 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.13 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.11 1.46 8.11 -51.93 -0.42 1.04 16 42 H 0.09 1.09 6.67 -51.93 -0.35 0.74 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 45 H 0.12 1.86 5.02 -51.93 -0.26 1.60 16 LS Contribution 371.11 15.07 5.59 5.59 Total: -1.00 -38.37 371.11 -10.53 -48.90 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -7.07 Total: 14.35 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -1.79 Total: -15.45 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 0.23 Total: -57.87 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -1.94 Total: -45.25 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 16 Polarization: 32.78 SS G_CDS: -0.53 Total: 32.25 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.37 -10.53 -48.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699586909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.634 kcal (2) G-P(sol) polarization free energy of solvation -38.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds