Wall clock time and date at job start Tue Mar 31 2020 06:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 119.99771 * 2 1 4 4 H 1.48507 * 109.47119 * 274.65974 * 3 2 1 5 5 H 1.48504 * 109.47549 * 34.66035 * 3 2 1 6 6 H 1.48500 * 109.47387 * 154.66147 * 3 2 1 7 7 C 1.38812 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99910 * 4.86141 * 7 2 1 9 9 N 1.36931 * 120.00365 * 184.86519 * 7 2 1 10 10 C 1.46496 * 120.00386 * 184.99300 * 9 7 2 11 11 C 1.53001 * 109.47596 * 184.97976 * 10 9 7 12 12 H 1.08996 * 109.99750 * 53.45513 * 11 10 9 13 13 C 1.54330 * 109.87733 * 292.36630 * 11 10 9 14 14 C 1.55161 * 102.93717 * 218.38834 * 13 11 10 15 15 C 1.54682 * 101.68075 * 35.33680 * 14 13 11 16 16 N 1.47016 * 109.88712 * 174.55858 * 11 10 9 17 17 C 1.34781 * 125.64651 * 298.32024 * 16 11 10 18 18 O 1.21281 * 119.99958 * 5.37908 * 17 16 11 19 19 C 1.50701 * 119.99960 * 185.10025 * 17 16 11 20 20 C 1.53004 * 109.46781 * 175.63933 * 19 17 16 21 21 H 1.08997 * 109.64429 * 306.90257 * 20 19 17 22 22 C 1.53877 * 109.64698 * 67.19935 * 20 19 17 23 23 C 1.55043 * 106.62293 * 167.02894 * 22 20 19 24 24 S 1.83288 * 102.57017 * 317.56836 * 23 22 20 25 25 O 1.42101 * 109.35188 * 269.81623 * 24 23 22 26 26 O 1.42103 * 109.35514 * 136.61027 * 24 23 22 27 27 C 1.54171 * 109.64133 * 186.47542 * 20 19 17 28 28 H 0.96992 * 120.00087 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99706 * 4.98807 * 9 7 2 30 30 H 1.08997 * 109.47262 * 64.97421 * 10 9 7 31 31 H 1.09003 * 109.47083 * 304.97971 * 10 9 7 32 32 H 1.09000 * 110.71942 * 336.74594 * 13 11 10 33 33 H 1.09000 * 110.72014 * 100.02890 * 13 11 10 34 34 H 1.09004 * 110.99906 * 153.57905 * 14 13 11 35 35 H 1.08996 * 111.00311 * 277.42387 * 14 13 11 36 36 H 1.09002 * 110.39654 * 204.36230 * 15 14 13 37 37 H 1.09000 * 110.23641 * 82.10867 * 15 14 13 38 38 H 1.08994 * 109.47454 * 295.63767 * 19 17 16 39 39 H 1.09002 * 109.46852 * 55.64181 * 19 17 16 40 40 H 1.08998 * 110.02718 * 286.32372 * 22 20 19 41 41 H 1.09004 * 110.02456 * 47.74129 * 22 20 19 42 42 H 1.08998 * 110.79528 * 199.29832 * 23 22 20 43 43 H 1.09005 * 110.79172 * 75.83420 * 23 22 20 44 44 H 1.08994 * 110.31849 * 331.14020 * 27 20 19 45 45 H 1.08997 * 110.31755 * 93.33747 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3991 2.1033 -1.3955 5 1 1.5003 2.6223 0.7962 6 1 3.5935 1.4138 0.5992 7 6 2.0103 -1.2021 0.0005 8 1 1.4733 -2.1358 -0.0783 9 7 3.3759 -1.2042 0.1011 10 6 4.1166 -2.4634 -0.0081 11 6 5.6008 -2.2073 0.2614 12 1 5.7232 -1.6936 1.2149 13 6 6.2008 -1.3534 -0.8755 14 6 7.6124 -1.9693 -1.0646 15 6 7.3390 -3.4677 -0.7945 16 7 6.3325 -3.4822 0.2826 17 6 6.1219 -4.4945 1.1473 18 8 5.2034 -4.4361 1.9371 19 6 7.0239 -5.7016 1.1284 20 6 6.6388 -6.6438 2.2707 21 1 6.6278 -6.0937 3.2116 22 6 5.2438 -7.2363 2.0046 23 6 5.0628 -8.4098 3.0016 24 16 6.6962 -9.2393 2.9421 25 8 6.6809 -10.2372 1.9306 26 8 7.1036 -9.5725 4.2621 27 6 7.6578 -7.7975 2.3567 28 1 -0.4850 0.8400 0.0004 29 1 3.8529 -0.3718 0.2446 30 1 3.9946 -2.8708 -1.0117 31 1 3.7323 -3.1755 0.7222 32 1 5.6108 -1.4546 -1.7864 33 1 6.2733 -0.3080 -0.5757 34 1 7.9737 -1.8133 -2.0811 35 1 8.3153 -1.5662 -0.3356 36 1 8.2511 -3.9674 -0.4681 37 1 6.9430 -3.9461 -1.6902 38 1 6.9155 -6.2213 0.1765 39 1 8.0590 -5.3836 1.2530 40 1 4.4781 -6.4797 2.1756 41 1 5.1836 -7.6041 0.9803 42 1 4.2743 -9.0838 2.6669 43 1 4.8547 -8.0369 4.0045 44 1 8.0837 -8.0003 1.3741 45 1 8.4461 -7.5539 3.0689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699753261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:38 Heat of formation + Delta-G solvation = -89.834276 kcal Electronic energy + Delta-G solvation = -26770.638977 eV Core-core repulsion = 22915.782556 eV Total energy + Delta-G solvation = -3854.856421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.42251 -38.24723 -37.33073 -36.60008 -36.24129 -34.73972 -32.19735 -31.51244 -31.06055 -29.43875 -28.41493 -25.39142 -24.69605 -23.05591 -21.96315 -21.43247 -20.44949 -19.24412 -19.04680 -17.75946 -17.30065 -16.96349 -16.84855 -16.30392 -15.93007 -15.29103 -15.11351 -14.48635 -14.32305 -14.18570 -14.03888 -13.96604 -13.54541 -13.18062 -13.08966 -12.81452 -12.69001 -12.53117 -12.43369 -12.34001 -12.32304 -12.12241 -11.87170 -11.64700 -11.41545 -11.26421 -11.22427 -10.93295 -10.92307 -10.74217 -10.62281 -10.52566 -10.11746 -9.70154 -9.59669 -8.88565 -8.61055 -7.21352 -5.76267 -3.11677 -0.26468 2.19076 2.58207 2.85812 3.26671 3.33887 3.37360 3.43928 3.64973 3.94747 4.19291 4.23678 4.40034 4.42062 4.44117 4.56992 4.58272 4.75796 4.82556 4.94314 4.96808 5.06798 5.17265 5.19452 5.30422 5.35525 5.39960 5.43480 5.52511 5.57053 5.69069 5.73480 5.75171 5.86927 5.91888 5.94717 6.19664 6.31549 6.68045 6.87248 7.50402 8.00967 8.15061 8.42481 9.22001 9.93647 10.13924 11.42293 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.002757 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.191600 B =10155.082210 C =11328.450368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.888 3.112 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.239 4.239 8 H 0.089 0.911 9 N -0.753 5.753 10 C 0.149 3.851 11 C 0.127 3.873 12 H 0.076 0.924 13 C -0.127 4.127 14 C -0.134 4.134 15 C 0.099 3.901 16 N -0.612 5.612 17 C 0.523 3.477 18 O -0.523 6.523 19 C -0.128 4.128 20 C -0.066 4.066 21 H 0.103 0.897 22 C -0.124 4.124 23 C -0.580 4.580 24 S 2.384 3.616 25 O -0.940 6.940 26 O -0.943 6.943 27 C -0.592 4.592 28 H 0.259 0.741 29 H 0.361 0.639 30 H 0.022 0.978 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.121 0.879 41 H 0.084 0.916 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.752 -13.661 0.539 25.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.719 3.281 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.369 4.369 8 H 0.106 0.894 9 N -0.400 5.400 10 C 0.021 3.979 11 C 0.024 3.976 12 H 0.094 0.906 13 C -0.165 4.165 14 C -0.172 4.172 15 C -0.024 4.024 16 N -0.347 5.347 17 C 0.311 3.689 18 O -0.399 6.399 19 C -0.169 4.169 20 C -0.086 4.086 21 H 0.121 0.879 22 C -0.162 4.162 23 C -0.711 4.711 24 S 2.569 3.431 25 O -0.937 6.937 26 O -0.940 6.940 27 C -0.722 4.722 28 H 0.069 0.931 29 H 0.194 0.806 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.139 0.861 41 H 0.102 0.898 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.157 0.843 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 21.293 -14.746 1.220 25.929 hybrid contribution 0.383 2.110 -0.262 2.161 sum 21.676 -12.636 0.959 25.109 Atomic orbital electron populations 1.69711 1.05115 1.25754 1.57615 1.24692 0.95241 0.97173 1.02147 0.86484 0.78964 0.85072 0.77572 1.21174 1.21755 1.20568 1.19031 0.80812 0.94727 1.42375 0.89369 1.42651 1.04522 1.03585 1.89231 1.20955 0.87886 0.90303 0.98713 1.21864 0.93426 0.83190 0.99157 0.90640 1.22740 0.95149 0.99429 0.99212 1.22750 0.97748 0.94260 1.02465 1.22306 0.91541 0.97975 0.90615 1.48528 1.36961 1.16902 1.32341 1.20204 0.85384 0.83199 0.80145 1.90744 1.31202 1.79090 1.38906 1.21725 1.00345 0.94417 1.00374 1.21327 0.91780 0.94325 1.01199 0.87912 1.22471 0.98330 0.97266 0.98182 1.30583 1.20750 1.10733 1.09006 1.09167 0.80373 0.78036 0.75544 1.93620 1.85925 1.54669 1.59519 1.93612 1.80884 1.82757 1.36775 1.30621 1.11319 1.16838 1.13393 0.93078 0.80559 0.96056 0.93347 0.89680 0.90142 0.89825 0.90807 0.90733 0.91081 0.88203 0.88341 0.86057 0.89758 0.84402 0.84309 0.84336 0.84236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.63 13.97 55.49 0.78 -28.86 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 22.05 28.01 -169.99 -4.76 17.29 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.39 6.14 56.52 0.35 -6.04 16 7 C -0.24 -6.91 10.47 -15.06 -0.16 -7.07 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 9 N -0.75 -18.09 5.24 -59.91 -0.31 -18.41 16 10 C 0.15 2.99 5.66 -4.04 -0.02 2.96 16 11 C 0.13 1.92 2.97 -66.95 -0.20 1.72 16 12 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 13 C -0.13 -1.56 6.12 -24.89 -0.15 -1.71 16 14 C -0.13 -1.10 7.07 -24.70 -0.17 -1.27 16 15 C 0.10 0.79 6.73 -2.65 -0.02 0.77 16 16 N -0.61 -7.33 3.07 -163.16 -0.50 -7.83 16 17 C 0.52 6.36 7.47 -10.98 -0.08 6.28 16 18 O -0.52 -8.51 12.87 5.56 0.07 -8.44 16 19 C -0.13 -0.91 4.04 -27.88 -0.11 -1.03 16 20 C -0.07 -0.47 2.24 -89.55 -0.20 -0.67 16 21 H 0.10 0.78 7.97 -51.93 -0.41 0.37 16 22 C -0.12 -1.01 5.35 -25.19 -0.13 -1.14 16 23 C -0.58 -3.94 7.31 38.24 0.28 -3.66 16 24 S 2.38 18.07 6.11 -107.50 -0.66 17.41 16 25 O -0.94 -10.34 18.15 -57.71 -1.05 -11.39 16 26 O -0.94 -10.59 18.15 -57.71 -1.05 -11.64 16 27 C -0.59 -2.94 6.75 37.77 0.25 -2.69 16 28 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 29 H 0.36 8.32 5.20 -40.82 -0.21 8.11 16 30 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 31 H 0.05 1.09 6.54 -51.93 -0.34 0.75 16 32 H 0.08 1.13 7.76 -51.93 -0.40 0.72 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.39 7.34 -51.93 -0.38 0.01 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.53 8.09 -51.93 -0.42 0.11 16 39 H 0.10 0.48 7.76 -51.93 -0.40 0.08 16 40 H 0.12 1.33 6.41 -51.93 -0.33 0.99 16 41 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 42 H 0.14 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.14 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.14 0.45 7.89 -51.93 -0.41 0.04 16 45 H 0.14 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -39.74 366.12 -9.92 -49.66 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -7.14 Total: 4.21 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -0.82 Total: -7.52 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.04 Total: -55.10 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -2.02 Total: -31.47 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.76 Total: 17.29 kcal Atomic # 16 Polarization: 18.07 SS G_CDS: -0.66 Total: 17.41 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -39.74 -9.92 -49.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699753261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.171 kcal (2) G-P(sol) polarization free energy of solvation -39.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds