Wall clock time and date at job start Tue Mar 31 2020 05:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00247 * 2 1 4 4 H 1.48509 * 109.47156 * 270.00225 * 3 2 1 5 5 H 1.48505 * 109.47091 * 29.99932 * 3 2 1 6 6 H 1.48496 * 109.47462 * 150.00266 * 3 2 1 7 7 C 1.37885 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99952 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99756 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.46974 * 176.40967 * 9 7 2 11 11 C 1.46904 * 110.99745 * 75.55839 * 10 9 7 12 12 C 1.50702 * 109.47196 * 189.99997 * 11 10 9 13 13 O 1.21283 * 119.99772 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00191 * 180.02562 * 12 11 10 15 15 C 1.46503 * 120.00045 * 180.02562 * 14 12 11 16 16 H 1.08997 * 110.01022 * 326.37285 * 15 14 12 17 17 C 1.53876 * 110.02579 * 204.99686 * 15 14 12 18 18 C 1.54160 * 108.70417 * 193.47524 * 17 15 14 19 19 S 1.82914 * 105.08442 * 27.91007 * 18 17 15 20 20 O 1.42099 * 109.35379 * 111.27305 * 19 18 17 21 21 O 1.42101 * 109.35233 * 244.47242 * 19 18 17 22 22 C 1.55042 * 110.07116 * 87.78095 * 15 14 12 23 23 C 1.46894 * 111.00222 * 199.51621 * 10 9 7 24 24 C 1.52993 * 109.47343 * 72.00617 * 23 10 9 25 25 C 1.53000 * 117.50372 * 243.82032 * 24 23 10 26 26 C 1.52999 * 117.50054 * 175.15489 * 24 23 10 27 27 H 0.96993 * 120.00032 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47117 * 56.41467 * 9 7 2 29 29 H 1.08999 * 109.47072 * 296.40902 * 9 7 2 30 30 H 1.09002 * 109.46893 * 70.00823 * 11 10 9 31 31 H 1.08992 * 109.47249 * 310.00056 * 11 10 9 32 32 H 0.96996 * 119.99701 * 359.97438 * 14 12 11 33 33 H 1.09007 * 109.64405 * 73.62380 * 17 15 14 34 34 H 1.09004 * 109.53872 * 313.27118 * 17 15 14 35 35 H 1.08997 * 110.32046 * 269.00673 * 18 17 15 36 36 H 1.09002 * 110.40018 * 146.85533 * 18 17 15 37 37 H 1.09002 * 110.79033 * 43.47354 * 22 15 14 38 38 H 1.09003 * 110.79105 * 280.01755 * 22 15 14 39 39 H 1.09001 * 109.47397 * 192.01050 * 23 10 9 40 40 H 1.08997 * 109.47218 * 312.00547 * 23 10 9 41 41 H 1.09006 * 115.54594 * 29.49226 * 24 23 10 42 42 H 1.08998 * 117.49376 * 359.97438 * 25 24 23 43 43 H 1.08997 * 117.50278 * 145.02169 * 25 24 23 44 44 H 1.08997 * 117.50042 * 214.97748 * 26 24 23 45 45 H 1.09003 * 117.49961 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 4.0013 -2.5764 0.0851 11 6 3.8537 -3.2683 -1.2023 12 6 4.1316 -4.7380 -1.0175 13 8 4.4242 -5.1666 0.0787 14 7 4.0560 -5.5758 -2.0705 15 6 4.3256 -7.0045 -1.8906 16 1 5.0890 -7.1466 -1.1258 17 6 4.7897 -7.6246 -3.2202 18 6 4.7377 -9.1602 -3.0943 19 16 3.4269 -9.4927 -1.8627 20 8 2.3178 -10.1027 -2.5084 21 8 4.0027 -10.1012 -0.7148 22 6 3.0246 -7.7447 -1.4863 23 6 5.3956 -2.6132 0.5459 24 6 5.4514 -2.2529 2.0318 25 6 6.1990 -0.9762 2.4217 26 6 6.8092 -2.3457 2.7307 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6258 0.8550 29 1 3.8745 -0.7368 -0.9216 30 1 4.5599 -2.8528 -1.9212 31 1 2.8373 -3.1345 -1.5724 32 1 3.8223 -5.2329 -2.9472 33 1 5.8107 -7.3089 -3.4352 34 1 4.1290 -7.3001 -4.0241 35 1 5.6950 -9.5437 -2.7412 36 1 4.4801 -9.6115 -4.0525 37 1 2.1823 -7.4033 -2.0879 38 1 2.8200 -7.6149 -0.4235 39 1 5.8004 -3.6145 0.3994 40 1 5.9857 -1.8958 -0.0243 41 1 4.5672 -2.5157 2.6127 42 1 6.6516 -0.3932 1.6195 43 1 5.8072 -0.3993 3.2593 44 1 6.8184 -2.6691 3.7716 45 1 7.6627 -2.6639 2.1321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081043253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:13 Heat of formation + Delta-G solvation = -64.119470 kcal Electronic energy + Delta-G solvation = -26609.147667 eV Core-core repulsion = 22755.406323 eV Total energy + Delta-G solvation = -3853.741344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -39.93019 -37.87769 -37.31987 -36.83145 -36.25932 -35.24275 -33.16015 -32.45713 -30.02624 -28.42874 -27.84891 -25.46414 -24.03217 -22.11354 -21.81128 -21.05644 -20.35388 -19.64987 -19.13032 -17.46028 -17.24939 -16.87712 -16.60353 -16.08255 -15.65009 -15.45892 -15.07618 -14.62743 -14.60673 -14.43124 -14.13086 -13.69601 -13.56926 -13.37839 -13.01644 -12.79947 -12.43894 -12.42331 -12.35068 -12.25714 -12.14210 -11.79180 -11.58193 -11.48392 -11.23598 -11.15571 -10.87148 -10.80319 -10.71030 -10.61623 -10.00614 -9.80573 -9.69104 -9.37202 -9.29895 -9.11569 -8.61128 -7.46703 -6.08820 -4.06304 -0.30405 2.16774 2.80374 2.97384 3.24009 3.29626 3.33376 3.35399 3.67558 4.02746 4.10137 4.16842 4.22625 4.37960 4.38380 4.56496 4.62552 4.99358 5.08459 5.11355 5.19263 5.22732 5.23647 5.30055 5.46204 5.47154 5.58417 5.66318 5.84798 5.88479 5.96164 6.06226 6.14645 6.24742 6.34113 6.40854 6.71602 6.77559 6.89193 7.38766 7.58798 7.83264 7.92120 8.37522 8.61308 9.00126 9.52838 11.04290 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.002999 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.391297 B = 9335.493879 C =10559.392129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.871 3.129 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.509 4.509 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.507 5.507 11 C 0.045 3.955 12 C 0.516 3.484 13 O -0.512 6.512 14 N -0.727 5.727 15 C 0.150 3.850 16 H 0.112 0.888 17 C -0.123 4.123 18 C -0.592 4.592 19 S 2.393 3.607 20 O -0.938 6.938 21 O -0.933 6.933 22 C -0.604 4.604 23 C 0.083 3.917 24 C -0.123 4.123 25 C -0.188 4.188 26 C -0.184 4.184 27 H 0.264 0.736 28 H 0.040 0.960 29 H -0.016 1.016 30 H 0.051 0.949 31 H 0.118 0.882 32 H 0.403 0.597 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.080 0.920 40 H 0.019 0.981 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.166 -13.634 -8.674 20.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.699 3.301 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.547 4.547 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.231 5.231 11 C -0.086 4.086 12 C 0.303 3.697 13 O -0.386 6.386 14 N -0.382 5.382 15 C 0.043 3.957 16 H 0.130 0.870 17 C -0.162 4.162 18 C -0.721 4.721 19 S 2.575 3.425 20 O -0.935 6.935 21 O -0.930 6.930 22 C -0.735 4.735 23 C -0.045 4.045 24 C -0.142 4.142 25 C -0.225 4.225 26 C -0.222 4.222 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.002 0.998 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.238 0.762 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.098 0.902 40 H 0.037 0.963 41 H 0.132 0.868 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.564 -14.898 -7.147 20.758 hybrid contribution 0.945 2.343 -1.356 2.867 sum 13.508 -12.555 -8.504 20.308 Atomic orbital electron populations 1.69889 1.06124 1.26843 1.50986 1.24883 0.94688 0.98767 0.94855 0.86916 0.80585 0.84178 0.78438 1.20416 1.21168 1.18916 1.21038 0.88722 0.94652 1.50321 0.90225 1.20284 0.97088 0.83574 0.95441 1.61600 1.17966 1.18653 1.24848 1.21903 1.04219 0.89150 0.93370 1.21161 0.75624 0.89076 0.83814 1.90682 1.45353 1.78015 1.24513 1.45917 1.73500 1.06130 1.12668 1.21434 0.94128 0.82606 0.97578 0.87011 1.22144 1.05410 0.90808 0.97806 1.30462 1.19320 1.03922 1.18415 1.08955 0.77556 0.78713 0.77278 1.93625 1.49837 1.73903 1.76100 1.93643 1.78271 1.73694 1.47366 1.31178 1.07020 1.22259 1.13039 1.21737 0.89681 1.00219 0.92864 1.22204 0.95398 0.99998 0.96586 1.23025 1.05054 0.90954 1.03423 1.22906 0.97278 1.00950 1.01068 0.92656 0.94213 0.99839 0.93084 0.86408 0.76176 0.88217 0.88969 0.84250 0.84049 0.83887 0.83559 0.90200 0.96339 0.86760 0.89491 0.89179 0.89215 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 13.96 55.43 0.77 -26.08 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 20.81 27.54 -169.99 -4.68 16.13 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.26 -6.09 6.44 56.52 0.36 -5.72 16 7 C -0.51 -13.86 9.15 -34.44 -0.32 -14.17 16 8 H 0.08 2.38 7.92 -52.49 -0.42 1.96 16 9 C 0.16 3.73 3.67 -4.98 -0.02 3.71 16 10 N -0.51 -10.19 4.12 -237.53 -0.98 -11.17 16 11 C 0.05 0.74 5.27 -4.97 -0.03 0.71 16 12 C 0.52 7.58 7.39 -10.98 -0.08 7.50 16 13 O -0.51 -9.30 14.13 5.55 0.08 -9.22 16 14 N -0.73 -7.05 5.13 -52.32 -0.27 -7.32 16 15 C 0.15 1.22 2.91 -66.39 -0.19 1.03 16 16 H 0.11 1.02 7.56 -51.93 -0.39 0.63 16 17 C -0.12 -0.54 5.93 -25.67 -0.15 -0.70 16 18 C -0.59 -2.50 7.26 37.76 0.27 -2.23 16 19 S 2.39 19.31 6.10 -107.50 -0.66 18.65 16 20 O -0.94 -10.78 18.15 -57.71 -1.05 -11.83 16 21 O -0.93 -11.29 18.15 -57.71 -1.05 -12.34 16 22 C -0.60 -5.08 6.96 38.24 0.27 -4.81 16 23 C 0.08 1.47 4.80 -3.83 -0.02 1.45 16 24 C -0.12 -2.14 4.97 -90.62 -0.45 -2.59 16 25 C -0.19 -2.89 10.00 -26.69 -0.27 -3.16 16 26 C -0.18 -2.60 10.26 -26.69 -0.27 -2.87 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 28 H 0.04 0.95 5.78 -51.93 -0.30 0.65 16 29 H -0.02 -0.36 7.61 -51.93 -0.40 -0.76 16 30 H 0.05 0.72 8.12 -51.93 -0.42 0.29 16 31 H 0.12 2.05 7.33 -51.93 -0.38 1.67 16 32 H 0.40 2.70 8.60 -40.82 -0.35 2.35 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.26 8.10 -51.93 -0.42 -0.16 16 35 H 0.14 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.14 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.14 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.15 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.08 1.38 5.81 -51.93 -0.30 1.08 16 40 H 0.02 0.31 7.79 -51.93 -0.40 -0.09 16 41 H 0.11 2.22 8.14 -51.93 -0.42 1.80 16 42 H 0.09 1.30 8.03 -51.93 -0.42 0.88 16 43 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 44 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 376.20 15.07 5.67 5.67 Total: -1.00 -38.10 376.20 -10.69 -48.78 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.18 Total: 3.01 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.35 Total: -14.27 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -0.47 Total: -44.57 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -2.02 Total: -33.39 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.68 Total: 16.13 kcal Atomic # 16 Polarization: 19.31 SS G_CDS: -0.66 Total: 18.65 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.10 -10.69 -48.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081043253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.335 kcal (2) G-P(sol) polarization free energy of solvation -38.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds