Wall clock time and date at job start Tue Mar 31 2020 05:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35948 * 117.00274 * 2 1 4 4 C 1.37994 * 120.05148 * 359.72550 * 3 2 1 5 5 C 1.40280 * 119.68873 * 179.77822 * 4 3 2 6 6 C 1.46393 * 120.09837 * 180.25415 * 5 4 3 7 7 C 1.37851 * 120.00259 * 47.00755 * 6 5 4 8 8 C 1.43199 * 120.00426 * 190.28503 * 7 6 5 9 9 N 7.59248 * 67.09839 * 4.99303 * 2 1 3 10 10 C 1.47128 * 120.00056 * 10.28632 * 7 6 5 11 11 O 1.21650 * 119.99783 * 7.12250 * 10 7 6 12 12 N 1.34770 * 120.00104 * 187.11922 * 10 7 6 13 13 C 1.46503 * 119.99916 * 179.97438 * 12 10 7 14 14 C 1.52997 * 109.47088 * 154.99924 * 13 12 10 15 15 C 1.52998 * 109.46902 * 274.99951 * 13 12 10 16 16 C 1.40281 * 119.80141 * 0.54096 * 5 4 3 17 17 C 1.36536 * 120.10163 * 359.68681 * 16 5 4 18 18 C 1.39139 * 120.31503 * 0.04633 * 17 16 5 19 19 O 1.35543 * 119.90198 * 179.97438 * 18 17 16 20 20 C 1.34724 * 116.99747 * 354.24651 * 19 18 17 21 21 H 1.08001 * 120.00343 * 5.06465 * 20 19 18 22 22 C 1.38764 * 119.99339 * 185.06819 * 20 19 18 23 23 N 1.31472 * 120.00685 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99726 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47062 * 89.99756 * 24 22 20 26 26 H 1.48501 * 109.47166 * 209.99847 * 24 22 20 27 27 H 1.48500 * 109.47100 * 329.99820 * 24 22 20 28 28 H 1.09000 * 109.47346 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47516 * 59.99425 * 1 2 3 30 30 H 1.09010 * 109.46628 * 300.00005 * 1 2 3 31 31 H 1.07999 * 120.15488 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.99780 * 227.01470 * 6 5 4 33 33 H 0.97004 * 120.00280 * 0.02562 * 12 10 7 34 34 H 1.09000 * 109.47110 * 34.99879 * 13 12 10 35 35 H 1.09007 * 109.46882 * 60.00142 * 14 13 12 36 36 H 1.09001 * 109.47525 * 179.97438 * 14 13 12 37 37 H 1.08999 * 109.47305 * 300.00464 * 14 13 12 38 38 H 1.09000 * 109.47179 * 299.99886 * 15 13 12 39 39 H 1.09002 * 109.47130 * 60.00540 * 15 13 12 40 40 H 1.09000 * 109.46994 * 179.97438 * 15 13 12 41 41 H 1.08004 * 119.95046 * 179.70813 * 16 5 4 42 42 H 1.08003 * 119.84427 * 180.02562 * 17 16 5 43 43 H 0.96999 * 120.00279 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2958 2.3693 -0.0057 5 6 1.9406 3.6151 -0.0010 6 6 1.1532 4.8493 -0.0013 7 6 0.0931 4.9908 0.8683 8 6 -0.8096 6.0930 0.7236 9 7 -1.5256 6.9675 0.6087 10 6 -0.1110 4.0095 1.9454 11 8 0.7240 3.1490 2.1504 12 7 -1.2230 4.0639 2.7048 13 6 -1.4265 3.0864 3.7769 14 6 -2.3526 3.6807 4.8399 15 6 -2.0606 1.8198 3.1985 16 6 3.3421 3.6748 -0.0019 17 6 4.0765 2.5237 -0.0010 18 6 3.4417 1.2856 -0.0001 19 8 4.1789 0.1482 0.0003 20 6 5.5138 0.2846 -0.1206 21 1 5.9574 1.2693 -0.1298 22 6 6.3186 -0.8401 -0.2334 23 7 5.7787 -2.0388 -0.2218 24 14 8.1695 -0.6511 -0.4018 25 1 8.7913 -0.6466 0.9468 26 1 8.7128 -1.7838 -1.1936 27 1 8.4757 0.6275 -1.0923 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5139 0.8901 31 1 0.2171 2.3167 -0.0098 32 1 1.4028 5.6488 -0.6831 33 1 -1.8891 4.7499 2.5411 34 1 -0.4664 2.8381 4.2292 35 1 -3.3128 3.9290 4.3875 36 1 -2.5043 2.9532 5.6374 37 1 -1.9009 4.5831 5.2519 38 1 -3.0207 2.0681 2.7462 39 1 -1.4008 1.3964 2.4412 40 1 -2.2115 1.0923 3.9960 41 1 3.8410 4.6327 -0.0030 42 1 5.1553 2.5745 -0.0013 43 1 6.3414 -2.8250 -0.3003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215799010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:23 Heat of formation + Delta-G solvation = -18.529770 kcal Electronic energy + Delta-G solvation = -28103.373984 eV Core-core repulsion = 24116.165606 eV Total energy + Delta-G solvation = -3987.208377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.16076 -39.36610 -37.60013 -36.94680 -36.46908 -35.65592 -33.13733 -32.37759 -31.49648 -29.57049 -28.72413 -27.41106 -26.77097 -25.64244 -24.02453 -22.18304 -21.62146 -20.76153 -20.34769 -18.72198 -18.12037 -17.57820 -16.24915 -16.21064 -15.56256 -15.19477 -15.10000 -14.87379 -14.64703 -14.27202 -14.20940 -13.90940 -13.69532 -13.52479 -13.51117 -13.37388 -12.92997 -12.87515 -12.69970 -12.48983 -12.35788 -12.23894 -11.82057 -11.60851 -11.58281 -11.42914 -11.14788 -11.09884 -11.02654 -10.67785 -10.55710 -10.45657 -9.68131 -9.54065 -9.32888 -9.06508 -8.84334 -7.70194 -6.88238 -6.59853 -4.09012 0.54167 2.28917 2.33144 2.58504 2.78825 3.07118 3.07891 3.12754 3.18693 3.68796 3.85463 3.96756 4.05801 4.47590 4.65100 4.86836 4.92037 4.97476 5.05361 5.09920 5.18597 5.40120 5.47042 5.52157 5.57216 5.60170 5.63305 5.66891 5.76644 5.83578 5.87213 5.91929 6.04546 6.20960 6.26358 6.34761 6.50381 6.55149 6.86999 7.01661 7.12834 7.24597 7.44242 7.52012 7.56137 7.81825 8.19328 8.37084 8.83444 9.54343 10.55940 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015504 B = 0.003313 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.559503 B = 8449.644116 C = 9308.296396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.303 6.303 3 C 0.046 3.954 4 C -0.075 4.075 5 C -0.179 4.179 6 C 0.118 3.882 7 C -0.195 4.195 8 C 0.263 3.737 9 N -0.442 5.442 10 C 0.566 3.434 11 O -0.498 6.498 12 N -0.732 5.732 13 C 0.138 3.862 14 C -0.160 4.160 15 C -0.165 4.165 16 C -0.043 4.043 17 C -0.231 4.231 18 C 0.160 3.840 19 O -0.145 6.145 20 C -0.388 4.388 21 H 0.098 0.902 22 C 0.041 3.959 23 N -0.843 5.843 24 Si 0.944 3.056 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.265 1.265 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.393 0.607 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.113 0.887 42 H 0.136 0.864 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.753 9.480 3.828 15.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.217 6.217 3 C 0.001 3.999 4 C -0.095 4.095 5 C -0.181 4.181 6 C 0.094 3.906 7 C -0.203 4.203 8 C -0.050 4.050 9 N -0.119 5.119 10 C 0.353 3.647 11 O -0.372 6.372 12 N -0.385 5.385 13 C 0.034 3.966 14 C -0.218 4.218 15 C -0.223 4.223 16 C -0.062 4.062 17 C -0.251 4.251 18 C 0.102 3.898 19 O -0.046 6.046 20 C -0.464 4.464 21 H 0.116 0.884 22 C -0.166 4.166 23 N -0.475 5.475 24 Si 0.768 3.232 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.189 1.189 28 H 0.108 0.892 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.132 0.868 32 H 0.152 0.848 33 H 0.226 0.774 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.131 0.869 42 H 0.153 0.847 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.121 9.427 3.845 15.829 hybrid contribution 0.472 0.381 -0.004 0.606 sum -11.649 9.808 3.841 15.705 Atomic orbital electron populations 1.22887 0.80522 1.02715 1.00208 1.86209 1.19276 1.26308 1.89956 1.17892 0.89206 0.84513 1.08291 1.20559 0.97725 0.90453 1.00778 1.17824 0.92733 0.90697 1.16843 1.22960 0.86195 0.94098 0.87323 1.18017 1.01474 0.96473 1.04308 1.25720 0.93180 0.92691 0.93397 1.81246 1.10732 1.10943 1.08991 1.17656 0.81616 0.83927 0.81497 1.91014 1.42416 1.35239 1.68563 1.46086 1.22669 1.34187 1.35583 1.20897 1.00096 0.88435 0.87177 1.22078 0.99363 1.01681 0.98667 1.22223 1.00805 0.97354 1.01910 1.20463 0.91728 0.97466 0.96564 1.20475 1.00616 0.90822 1.13163 1.18938 0.88248 0.87476 0.95111 1.83954 1.19707 1.26215 1.74685 1.21554 0.78492 0.95089 1.51239 0.88431 1.25419 1.00873 0.94142 0.96146 1.70028 1.36671 0.97843 1.42980 0.85656 0.79940 0.78690 0.78881 1.19638 1.20088 1.18883 0.89244 0.93875 0.93438 0.86805 0.84796 0.77356 0.89050 0.92326 0.90938 0.92084 0.92739 0.91715 0.91673 0.86897 0.84683 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.81 101.05 0.99 1.49 16 2 O -0.30 -6.62 10.28 -34.11 -0.35 -6.97 16 3 C 0.05 1.00 6.70 -39.11 -0.26 0.73 16 4 C -0.08 -1.36 5.71 -38.90 -0.22 -1.58 16 5 C -0.18 -2.91 4.46 -105.08 -0.47 -3.38 16 6 C 0.12 1.47 9.50 -36.44 -0.35 1.12 16 7 C -0.20 -2.43 5.76 -104.51 -0.60 -3.03 16 8 C 0.26 3.21 14.21 -22.47 -0.32 2.89 16 9 N -0.44 -5.99 18.54 41.84 0.78 -5.21 16 10 C 0.57 7.79 6.89 -12.66 -0.09 7.70 16 11 O -0.50 -8.64 12.11 5.23 0.06 -8.57 16 12 N -0.73 -8.11 5.03 -54.97 -0.28 -8.38 16 13 C 0.14 1.41 3.18 -67.93 -0.22 1.19 16 14 C -0.16 -1.20 9.38 37.16 0.35 -0.85 16 15 C -0.16 -1.62 9.48 37.16 0.35 -1.27 16 16 C -0.04 -0.74 9.74 -39.43 -0.38 -1.12 16 17 C -0.23 -4.75 9.09 -39.86 -0.36 -5.11 16 18 C 0.16 3.82 6.68 -38.69 -0.26 3.56 16 19 O -0.15 -4.09 9.52 -13.55 -0.13 -4.22 16 20 C -0.39 -10.41 9.48 30.93 0.29 -10.12 16 21 H 0.10 2.36 5.18 -52.49 -0.27 2.09 16 22 C 0.04 1.09 5.50 -17.51 -0.10 0.99 16 23 N -0.84 -23.96 13.67 55.48 0.76 -23.20 16 24 Si 0.94 19.51 29.55 -169.99 -5.02 14.49 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 27 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 28 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.04 0.59 7.65 -51.93 -0.40 0.19 16 30 H 0.05 0.69 6.41 -51.92 -0.33 0.36 16 31 H 0.11 1.84 5.57 -52.49 -0.29 1.55 16 32 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.39 3.80 7.51 -40.82 -0.31 3.49 16 34 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 35 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.78 6.88 -51.93 -0.36 0.42 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 42 H 0.14 2.71 5.61 -52.48 -0.29 2.41 16 43 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -32.03 371.25 -5.39 -37.42 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.16 Total: 5.83 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -1.64 Total: -6.77 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 1.26 Total: -36.79 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.42 Total: -19.76 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.03 -5.39 -37.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215799010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.890 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds