Wall clock time and date at job start Tue Mar 31 2020 06:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46998 * 2 1 4 4 O 1.21277 * 120.00258 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99626 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99640 * 180.02562 * 5 3 2 7 7 H 1.08999 * 109.46906 * 180.02562 * 6 5 3 8 8 C 1.53004 * 109.46947 * 299.99839 * 6 5 3 9 9 C 1.52995 * 109.47519 * 295.00084 * 8 6 5 10 10 S 1.81394 * 109.47643 * 180.02562 * 9 8 6 11 11 C 1.81393 * 103.00294 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47544 * 59.99768 * 6 5 3 13 13 O 1.21278 * 119.99680 * 340.00520 * 12 6 5 14 14 N 1.34770 * 120.00318 * 159.99782 * 12 6 5 15 15 C 1.47583 * 134.49494 * 180.02562 * 14 12 6 16 16 C 1.53945 * 86.11541 * 204.65773 * 15 14 12 17 17 O 1.42903 * 113.74155 * 90.74233 * 16 15 14 18 18 C 1.50704 * 113.74101 * 221.93630 * 16 15 14 19 19 H 1.07996 * 119.99852 * 358.07848 * 18 16 15 20 20 C 1.37883 * 119.99641 * 178.07674 * 18 16 15 21 21 N 1.31510 * 120.00287 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 119.99749 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47063 * 90.00014 * 22 20 18 24 24 H 1.48503 * 109.47292 * 210.00273 * 22 20 18 25 25 H 1.48506 * 109.47342 * 330.00355 * 22 20 18 26 26 C 1.47935 * 134.50020 * 0.03528 * 14 12 6 27 27 H 1.08998 * 109.47096 * 299.99860 * 1 2 3 28 28 H 1.09003 * 109.47124 * 60.00157 * 1 2 3 29 29 H 1.09000 * 109.47033 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47096 * 240.00140 * 2 1 3 31 31 H 1.09003 * 109.47124 * 119.99843 * 2 1 3 32 32 H 0.96998 * 120.00008 * 0.02562 * 5 3 2 33 33 H 1.08995 * 109.47205 * 55.00455 * 8 6 5 34 34 H 1.09005 * 109.46729 * 175.00119 * 8 6 5 35 35 H 1.09004 * 109.47127 * 300.00640 * 9 8 6 36 36 H 1.08999 * 109.46813 * 59.99621 * 9 8 6 37 37 H 1.09003 * 109.47327 * 180.02562 * 11 10 9 38 38 H 1.08994 * 109.47286 * 299.99921 * 11 10 9 39 39 H 1.09001 * 109.47350 * 60.00442 * 11 10 9 40 40 H 1.08996 * 113.76772 * 90.36065 * 15 14 12 41 41 H 1.08991 * 113.86922 * 318.97468 * 15 14 12 42 42 H 0.96700 * 114.00311 * 181.92380 * 17 16 15 43 43 H 0.96996 * 120.00241 * 179.97438 * 21 20 18 44 44 H 1.08997 * 113.86757 * 41.07474 * 26 14 12 45 45 H 1.09004 * 113.76551 * 269.58365 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3575 1.6671 0.0005 6 6 3.8458 3.0483 0.0011 7 1 4.9357 3.0483 0.0010 8 6 3.3362 3.7699 -1.2482 9 6 3.9466 3.1253 -2.4942 10 16 3.3431 3.9812 -3.9753 11 6 4.1626 3.0885 -5.3250 12 6 3.3430 3.7585 1.2315 13 8 2.3821 3.3253 1.8315 14 7 3.9612 4.8747 1.6652 15 6 3.7515 5.8005 2.7953 16 6 4.4704 6.8521 1.9309 17 8 3.5897 7.6208 1.1089 18 6 5.4490 7.7028 2.6990 19 1 5.5669 7.5626 3.7633 20 6 6.1937 8.6598 2.0429 21 7 6.0497 8.8308 0.7469 22 14 7.4072 9.7137 2.9948 23 1 8.7346 9.0482 3.0107 24 1 7.5273 11.0423 2.3423 25 1 6.9244 9.8884 4.3883 26 6 5.1223 5.6644 1.1999 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9877 0.9298 0.0005 33 1 2.2499 3.6930 -1.2945 34 1 3.6245 4.8202 -1.2041 35 1 5.0329 3.2021 -2.4479 36 1 3.6583 2.0750 -2.5382 37 1 3.8690 3.5244 -6.2800 38 1 5.2435 3.1656 -5.2079 39 1 3.8681 2.0394 -5.2983 40 1 4.2986 5.5244 3.6967 41 1 2.7039 6.0316 2.9876 42 1 4.0399 8.2625 0.5427 43 1 6.5734 9.5043 0.2854 44 1 5.1679 5.7858 0.1176 45 1 6.0709 5.3483 1.6340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356578079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:47 Heat of formation + Delta-G solvation = -89.334160 kcal Electronic energy + Delta-G solvation = -27340.641650 eV Core-core repulsion = 23485.806915 eV Total energy + Delta-G solvation = -3854.834735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.31550 -38.97000 -37.14512 -35.30824 -33.88596 -32.96380 -32.19772 -31.99275 -29.28832 -28.93745 -27.10678 -25.24927 -25.13661 -24.07739 -22.03190 -20.59985 -19.63294 -18.19669 -17.67834 -17.29684 -16.46041 -16.08635 -15.91933 -15.39912 -15.21124 -14.83225 -14.78683 -14.44550 -14.07530 -13.88076 -13.77389 -13.59440 -13.27607 -12.99907 -12.84290 -12.50473 -12.40743 -12.21894 -12.02319 -11.78855 -11.73752 -11.54332 -11.32840 -11.28194 -11.06796 -11.04193 -10.98657 -10.51688 -10.26385 -10.01652 -9.81814 -9.37217 -9.35571 -8.80042 -8.65705 -8.34238 -7.75574 -7.70826 -6.37248 -4.47809 1.58080 2.54309 2.85483 3.14308 3.14737 3.23365 3.26201 3.33361 3.68613 4.19617 4.69404 4.75615 4.87712 4.90786 4.96305 4.98603 5.02763 5.05350 5.14225 5.17616 5.25935 5.48118 5.53081 5.54099 5.64128 5.74340 5.91142 5.92503 6.00335 6.20453 6.22619 6.31543 6.42295 6.44817 6.54344 6.68774 6.72508 7.12582 7.60657 7.64499 7.84721 8.49926 8.53941 8.55500 8.85767 9.23457 9.46934 10.69103 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012100 B = 0.003758 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.460938 B = 7448.849348 C = 9195.276924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.140 4.140 3 C 0.512 3.488 4 O -0.499 6.499 5 N -0.727 5.727 6 C 0.148 3.852 7 H 0.103 0.897 8 C -0.116 4.116 9 C -0.075 4.075 10 S -0.254 6.254 11 C -0.124 4.124 12 C 0.519 3.481 13 O -0.533 6.533 14 N -0.633 5.633 15 C 0.114 3.886 16 C 0.240 3.760 17 O -0.571 6.571 18 C -0.538 4.538 19 H 0.070 0.930 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.906 3.094 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.271 1.271 26 C 0.075 3.925 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.399 0.601 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.391 0.609 43 H 0.273 0.727 44 H 0.069 0.931 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.702 -16.242 -8.181 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.181 4.181 3 C 0.298 3.702 4 O -0.372 6.372 5 N -0.380 5.380 6 C 0.038 3.962 7 H 0.121 0.879 8 C -0.156 4.156 9 C -0.224 4.224 10 S -0.028 6.028 11 C -0.293 4.293 12 C 0.306 3.694 13 O -0.410 6.410 14 N -0.369 5.369 15 C -0.008 4.008 16 C 0.199 3.801 17 O -0.382 6.382 18 C -0.576 4.576 19 H 0.088 0.912 20 C -0.130 4.130 21 N -0.536 5.536 22 Si 0.733 3.267 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.196 1.196 26 C -0.047 4.047 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.233 0.767 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.246 0.754 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.602 -15.362 -7.904 17.350 hybrid contribution 2.603 -0.555 0.156 2.666 sum 1.001 -15.917 -7.748 17.731 Atomic orbital electron populations 1.21509 0.93130 1.01105 1.03611 1.21587 0.98691 0.94174 1.03604 1.20587 0.82031 0.91646 0.75916 1.90728 1.54820 1.45936 1.45670 1.45713 1.07595 1.06852 1.77868 1.20693 0.99058 0.82674 0.93819 0.87869 1.21642 1.04066 1.00306 0.89566 1.23327 1.02699 1.01545 0.94781 1.87214 1.64945 1.49238 1.01437 1.23364 1.03173 1.02796 0.99971 1.20175 0.83751 0.79694 0.85795 1.90683 1.26767 1.65176 1.58395 1.50216 1.32073 1.24369 1.30204 1.23404 1.01111 0.85967 0.90346 1.19815 0.86315 0.86923 0.87093 1.86086 1.37498 1.55624 1.59001 1.21510 1.21295 1.19195 0.95621 0.91155 1.25056 0.96582 0.96394 0.94944 1.69400 1.41735 1.34549 1.07925 0.86364 0.80740 0.79479 0.80112 1.20387 1.20917 1.19589 1.24383 0.88652 0.91260 1.00422 0.91755 0.92039 0.92495 0.89575 0.89347 0.76714 0.88085 0.89088 0.90155 0.90329 0.88211 0.90600 0.90840 0.89866 0.91269 0.75418 0.91702 0.91280 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.20 37.16 0.34 -1.14 16 2 C -0.14 -1.41 6.42 -27.88 -0.18 -1.59 16 3 C 0.51 7.49 6.58 -10.98 -0.07 7.41 16 4 O -0.50 -9.87 11.84 -17.93 -0.21 -10.08 16 5 N -0.73 -9.01 4.65 -54.93 -0.26 -9.27 16 6 C 0.15 2.23 2.77 -69.08 -0.19 2.04 16 7 H 0.10 1.29 8.12 -51.93 -0.42 0.86 16 8 C -0.12 -1.82 4.55 -26.73 -0.12 -1.94 16 9 C -0.08 -0.91 5.83 37.16 0.22 -0.69 16 10 S -0.25 -3.37 22.38 -107.50 -2.41 -5.77 16 11 C -0.12 -1.10 10.76 101.05 1.09 -0.01 16 12 C 0.52 10.55 7.04 -10.99 -0.08 10.47 16 13 O -0.53 -12.66 14.41 -17.93 -0.26 -12.91 16 14 N -0.63 -13.27 3.62 -178.01 -0.64 -13.91 16 15 C 0.11 2.52 8.23 -2.97 -0.02 2.49 16 16 C 0.24 5.72 1.40 -90.84 -0.13 5.59 16 17 O -0.57 -14.78 13.49 -35.23 -0.48 -15.26 16 18 C -0.54 -13.37 8.61 -34.44 -0.30 -13.66 16 19 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 20 C 0.07 1.80 5.39 -17.82 -0.10 1.70 16 21 N -0.90 -22.40 11.20 55.43 0.62 -21.78 16 22 Si 0.91 19.29 29.54 -169.99 -5.02 14.27 16 23 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 C 0.08 1.57 8.01 -2.76 -0.02 1.54 16 27 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 28 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.40 3.28 8.83 -40.82 -0.36 2.92 16 33 H 0.10 1.89 6.04 -51.93 -0.31 1.58 16 34 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 35 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.08 0.84 7.75 -51.93 -0.40 0.44 16 37 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.08 1.68 8.09 -51.93 -0.42 1.26 16 41 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.39 10.19 6.60 45.56 0.30 10.49 16 43 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 44 H 0.07 1.42 7.58 -51.93 -0.39 1.02 16 45 H 0.08 1.58 8.09 -51.93 -0.42 1.16 16 LS Contribution 383.36 15.07 5.78 5.78 Total: -1.00 -32.18 383.36 -9.03 -41.21 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -6.59 Total: 15.50 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 0.44 Total: 12.22 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: -0.28 Total: -44.96 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.95 Total: -38.25 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -2.41 Total: -5.77 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.18 -9.03 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356578079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.121 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds