Wall clock time and date at job start Tue Mar 31 2020 06:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.47209 * 2 1 4 4 O 1.21282 * 120.00108 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00038 * 180.02562 * 3 2 1 6 6 C 1.46497 * 119.99976 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.47125 * 35.00016 * 6 5 3 8 8 C 1.52997 * 109.47028 * 275.00045 * 6 5 3 9 9 C 1.53000 * 109.47280 * 64.80647 * 8 6 5 10 10 S 1.81398 * 109.47193 * 180.02562 * 9 8 6 11 11 C 1.81400 * 103.00183 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47049 * 155.00041 * 6 5 3 13 13 O 1.21286 * 120.00058 * 27.55227 * 12 6 5 14 14 N 1.34783 * 119.99899 * 207.55326 * 12 6 5 15 15 C 1.47067 * 136.05588 * 184.66876 * 14 12 6 16 16 C 1.53235 * 88.08416 * 207.20212 * 15 14 12 17 17 O 1.42901 * 114.19856 * 87.72479 * 16 15 14 18 18 C 1.50697 * 114.32785 * 220.47164 * 16 15 14 19 19 H 1.07999 * 119.99947 * 93.76234 * 18 16 15 20 20 C 1.37875 * 119.99720 * 273.75917 * 18 16 15 21 21 N 1.31510 * 120.00070 * 359.97438 * 20 18 16 22 22 Si 1.86808 * 119.99639 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47190 * 60.00134 * 22 20 18 24 24 H 1.48506 * 109.46859 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46913 * 299.99768 * 22 20 18 26 26 C 1.47059 * 136.05613 * 5.03492 * 14 12 6 27 27 H 1.08996 * 109.47188 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46834 * 300.00351 * 1 2 3 29 29 H 1.08994 * 109.47272 * 59.99875 * 1 2 3 30 30 H 1.08996 * 109.46944 * 239.99979 * 2 1 3 31 31 H 1.09004 * 109.47432 * 120.00109 * 2 1 3 32 32 H 0.97000 * 119.99615 * 0.02562 * 5 3 2 33 33 H 1.09000 * 109.47222 * 304.80072 * 8 6 5 34 34 H 1.09001 * 109.47164 * 184.80063 * 8 6 5 35 35 H 1.08991 * 109.47428 * 59.99791 * 9 8 6 36 36 H 1.09000 * 109.47031 * 299.99591 * 9 8 6 37 37 H 1.09006 * 109.46977 * 299.99796 * 11 10 9 38 38 H 1.08997 * 109.46957 * 59.99510 * 11 10 9 39 39 H 1.09001 * 109.47489 * 179.97438 * 11 10 9 40 40 H 1.09002 * 113.47073 * 321.93518 * 15 14 12 41 41 H 1.09006 * 113.46694 * 92.37348 * 15 14 12 42 42 H 0.96706 * 113.99333 * 86.30012 * 17 16 15 43 43 H 0.97001 * 119.99700 * 180.02562 * 21 20 18 44 44 H 1.08993 * 113.47322 * 267.62570 * 26 14 12 45 45 H 1.09006 * 113.46890 * 38.01236 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3575 1.6671 -0.0005 6 6 3.8458 3.0483 -0.0011 7 1 3.1734 3.6716 0.5884 8 6 3.8968 3.5706 -1.4382 9 6 2.4780 3.6383 -2.0069 10 16 2.5385 4.2568 -3.7111 11 6 0.7929 4.2651 -4.2045 12 6 5.2274 3.0928 0.5989 13 8 5.9495 2.1207 0.5314 14 7 5.6608 4.2130 1.2105 15 6 6.9198 4.6673 1.8199 16 6 6.0911 5.5887 2.7213 17 8 5.6430 4.9757 3.9318 18 6 6.6914 6.9548 2.9321 19 1 6.3990 7.7771 2.2960 20 6 7.6137 7.1548 3.9372 21 7 7.9693 6.1535 4.7122 22 14 8.3573 8.8484 4.1990 23 1 7.2777 9.8212 4.5041 24 1 9.3146 8.7987 5.3332 25 1 9.0713 9.2712 2.9675 26 6 5.0808 5.5163 1.5678 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.9877 0.9298 -0.0013 33 1 4.5009 2.8987 -2.0478 34 1 4.3396 4.5665 -1.4474 35 1 1.8739 4.3102 -1.3974 36 1 2.0350 2.6424 -1.9979 37 1 0.3923 3.2533 -4.1401 38 1 0.2307 4.9214 -3.5403 39 1 0.7067 4.6257 -5.2295 40 1 7.4445 3.8843 2.3674 41 1 7.5678 5.2052 1.1278 42 1 6.2817 5.0229 4.6564 43 1 8.6179 6.2944 5.4195 44 1 5.2340 6.2826 0.8080 45 1 4.0446 5.4539 1.9004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356578080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:51 Heat of formation + Delta-G solvation = -93.388493 kcal Electronic energy + Delta-G solvation = -26912.961825 eV Core-core repulsion = 23057.951282 eV Total energy + Delta-G solvation = -3855.010544 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.49297 -39.43607 -37.70819 -35.35231 -34.12397 -33.24069 -32.23348 -32.15040 -29.43897 -29.04484 -27.36944 -25.31403 -25.18992 -24.22166 -22.05408 -20.40242 -20.23369 -18.62919 -17.72866 -17.18028 -16.72863 -16.36668 -16.04459 -15.83491 -15.31375 -14.97940 -14.87524 -14.59472 -14.25108 -14.12718 -13.77502 -13.67983 -13.26558 -13.10701 -12.85078 -12.75840 -12.58390 -12.53483 -12.22768 -11.98216 -11.94639 -11.66988 -11.58702 -11.39467 -11.21241 -11.08800 -10.97375 -10.52607 -10.32705 -10.18538 -9.90158 -9.88738 -9.33596 -9.06040 -8.81303 -8.48680 -7.98842 -7.79410 -6.43608 -4.54767 1.55992 2.48376 2.50275 2.79464 3.02057 3.14602 3.20845 3.22550 3.54509 4.15040 4.49127 4.62401 4.79106 4.83522 4.87968 4.88991 4.95707 4.97206 5.04106 5.06149 5.25821 5.38173 5.45861 5.51497 5.58449 5.61377 5.72136 5.76088 5.86235 5.99004 6.01340 6.07854 6.19500 6.30653 6.34316 6.58636 6.73061 7.04001 7.41705 7.59223 7.74256 8.10115 8.30288 8.48034 8.52201 9.16678 9.43023 10.63248 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013958 B = 0.003136 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.561913 B = 8925.259065 C =10087.315994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.145 4.145 3 C 0.512 3.488 4 O -0.540 6.540 5 N -0.712 5.712 6 C 0.139 3.861 7 H 0.109 0.891 8 C -0.105 4.105 9 C -0.067 4.067 10 S -0.279 6.279 11 C -0.116 4.116 12 C 0.534 3.466 13 O -0.557 6.557 14 N -0.626 5.626 15 C 0.080 3.920 16 C 0.242 3.758 17 O -0.572 6.572 18 C -0.537 4.537 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.897 5.897 22 Si 0.910 3.090 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.097 3.903 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.411 0.589 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.395 0.605 43 H 0.275 0.725 44 H 0.091 0.909 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.531 -7.773 -11.530 18.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.185 4.185 3 C 0.299 3.701 4 O -0.417 6.417 5 N -0.366 5.366 6 C 0.028 3.972 7 H 0.127 0.873 8 C -0.145 4.145 9 C -0.215 4.215 10 S -0.053 6.053 11 C -0.285 4.285 12 C 0.322 3.678 13 O -0.437 6.437 14 N -0.359 5.359 15 C -0.042 4.042 16 C 0.200 3.800 17 O -0.386 6.386 18 C -0.575 4.575 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.537 5.537 22 Si 0.737 3.263 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.026 4.026 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.248 0.752 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.252 0.748 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.325 -7.671 -12.461 18.503 hybrid contribution 0.272 0.219 1.151 1.202 sum -11.053 -7.452 -11.310 17.482 Atomic orbital electron populations 1.21517 0.92921 1.01530 1.03322 1.21636 0.98612 0.93587 1.04619 1.20794 0.81793 0.92076 0.75407 1.90697 1.55287 1.46330 1.49433 1.45886 1.07524 1.08144 1.75055 1.20718 0.94617 0.84990 0.96836 0.87331 1.21603 0.95677 1.03187 0.94048 1.23501 1.00403 1.04450 0.93138 1.86825 1.12189 1.87856 1.18432 1.23312 0.95171 1.05006 1.04999 1.19716 0.87901 0.82348 0.77859 1.90645 1.57888 1.34601 1.60565 1.49713 1.17927 1.13424 1.54798 1.24198 0.87848 0.97083 0.95110 1.19458 0.88175 0.90179 0.82194 1.86018 1.48639 1.80549 1.23389 1.21368 1.24244 0.94744 1.17120 0.90845 1.25090 0.95252 0.97919 0.94779 1.69253 1.33284 1.31287 1.19847 0.86349 0.78937 0.82985 0.78039 1.19772 1.20971 1.19811 1.23522 0.99684 0.82376 0.97010 0.92117 0.91856 0.92137 0.88857 0.88667 0.75248 0.90091 0.89424 0.89174 0.89696 0.90715 0.90453 0.88329 0.91584 0.89923 0.74764 0.91422 0.89082 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.20 37.16 0.34 -0.80 16 2 C -0.14 -1.24 6.42 -27.88 -0.18 -1.41 16 3 C 0.51 6.31 6.39 -10.98 -0.07 6.24 16 4 O -0.54 -8.06 13.12 5.56 0.07 -7.99 16 5 N -0.71 -9.31 5.01 -54.93 -0.27 -9.59 16 6 C 0.14 2.09 2.53 -69.09 -0.17 1.92 16 7 H 0.11 1.74 7.31 -51.93 -0.38 1.36 16 8 C -0.11 -1.42 4.88 -26.73 -0.13 -1.55 16 9 C -0.07 -0.85 4.54 37.16 0.17 -0.68 16 10 S -0.28 -3.41 22.38 -107.50 -2.41 -5.82 16 11 C -0.12 -1.06 10.76 101.05 1.09 0.03 16 12 C 0.53 10.08 7.27 -10.99 -0.08 10.00 16 13 O -0.56 -11.79 16.83 5.55 0.09 -11.69 16 14 N -0.63 -12.56 3.69 -185.37 -0.68 -13.25 16 15 C 0.08 1.77 8.02 -8.64 -0.07 1.70 16 16 C 0.24 5.63 1.57 -91.39 -0.14 5.48 16 17 O -0.57 -14.50 13.54 -35.23 -0.48 -14.98 16 18 C -0.54 -13.06 8.69 -34.44 -0.30 -13.36 16 19 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 20 C 0.07 1.78 5.40 -17.82 -0.10 1.68 16 21 N -0.90 -22.66 11.01 55.43 0.61 -22.05 16 22 Si 0.91 19.14 29.54 -169.99 -5.02 14.12 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 C 0.10 1.88 7.69 -8.51 -0.07 1.81 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.61 8.10 -51.92 -0.42 0.19 16 29 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.41 5.06 7.81 -40.82 -0.32 4.74 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.09 1.22 7.83 -51.93 -0.41 0.81 16 36 H 0.08 1.10 5.65 -51.92 -0.29 0.80 16 37 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.75 8.14 -51.92 -0.42 0.32 16 40 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 42 H 0.40 10.27 6.32 45.56 0.29 10.56 16 43 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 44 H 0.09 1.57 8.10 -51.93 -0.42 1.15 16 45 H 0.07 1.28 8.06 -51.93 -0.42 0.87 16 LS Contribution 384.57 15.07 5.80 5.80 Total: -1.00 -28.63 384.57 -8.56 -37.19 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -6.56 Total: 17.21 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 0.29 Total: 11.07 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: -0.35 Total: -44.89 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -0.31 Total: -34.66 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -2.41 Total: -5.82 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.63 -8.56 -37.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356578080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.201 kcal (2) G-P(sol) polarization free energy of solvation -28.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds