Wall clock time and date at job start Tue Mar 31 2020 07:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.56175 * 2 1 4 4 C 1.53189 * 109.55665 * 239.78933 * 2 1 3 5 5 N 1.46385 * 109.51253 * 181.90354 * 4 2 1 6 6 C 1.34772 * 119.69898 * 244.27521 * 5 4 2 7 7 O 1.21589 * 119.99910 * 175.18143 * 6 5 4 8 8 N 1.34778 * 120.00142 * 355.18227 * 6 5 4 9 9 C 1.46499 * 119.99879 * 184.86020 * 8 6 5 10 10 C 1.53007 * 109.47172 * 184.87534 * 9 8 6 11 11 C 1.50701 * 115.54575 * 305.62187 * 10 9 8 12 12 H 1.08000 * 119.99410 * 144.38696 * 11 10 9 13 13 C 1.37872 * 120.00042 * 324.38769 * 11 10 9 14 14 N 1.31513 * 120.00380 * 3.10921 * 13 11 10 15 15 Si 1.86803 * 119.99697 * 183.11021 * 13 11 10 16 16 H 1.48501 * 109.47084 * 94.99543 * 15 13 11 17 17 H 1.48505 * 109.46812 * 214.99372 * 15 13 11 18 18 H 1.48495 * 109.47507 * 334.99171 * 15 13 11 19 19 C 1.52991 * 117.50119 * 159.94799 * 10 9 8 20 20 C 1.52995 * 117.49786 * 91.28588 * 10 9 8 21 21 C 1.46388 * 120.60026 * 64.29974 * 5 4 2 22 22 C 1.53187 * 109.50664 * 295.69995 * 21 5 4 23 23 H 1.08998 * 109.55853 * 298.41821 * 22 21 5 24 24 C 1.53004 * 109.55658 * 178.09491 * 22 21 5 25 25 S 1.81668 * 108.94601 * 58.26290 * 22 21 5 26 26 O 1.42094 * 108.65434 * 58.78202 * 25 22 21 27 27 O 1.42104 * 108.64769 * 190.08506 * 25 22 21 28 28 H 1.08997 * 109.47351 * 185.09863 * 1 2 3 29 29 H 1.09002 * 109.46944 * 305.09108 * 1 2 3 30 30 H 1.09001 * 109.47044 * 65.09066 * 1 2 3 31 31 H 1.09001 * 109.46326 * 61.89013 * 4 2 1 32 32 H 1.09001 * 109.46528 * 301.92010 * 4 2 1 33 33 H 0.96995 * 120.00008 * 4.85291 * 8 6 5 34 34 H 1.09004 * 109.47138 * 304.86970 * 9 8 6 35 35 H 1.09000 * 109.47708 * 64.87695 * 9 8 6 36 36 H 0.96998 * 120.00456 * 185.00226 * 14 13 11 37 37 H 1.09004 * 117.49850 * 0.02562 * 19 10 9 38 38 H 1.09002 * 117.50110 * 145.02357 * 19 10 9 39 39 H 1.08999 * 117.50414 * 214.97949 * 20 10 9 40 40 H 1.09008 * 117.50160 * 0.02562 * 20 10 9 41 41 H 1.09000 * 109.46334 * 175.69681 * 21 5 4 42 42 H 1.08998 * 109.46712 * 55.71469 * 21 5 4 43 43 H 1.09007 * 109.46587 * 60.00763 * 24 22 21 44 44 H 1.08993 * 109.47036 * 179.97438 * 24 22 21 45 45 H 1.08999 * 109.47489 * 300.00620 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0270 0.0000 4 6 2.0428 -0.7264 -1.2475 5 7 3.5059 -0.7655 -1.2236 6 6 4.2068 -0.1174 -2.1750 7 8 5.4202 -0.0724 -2.1116 8 7 3.5627 0.4810 -3.1965 9 6 4.3270 1.0934 -4.2861 10 6 3.3689 1.8029 -5.2451 11 6 2.2513 0.9537 -5.7937 12 1 1.2776 1.3881 -5.9657 13 6 2.4720 -0.3777 -6.0761 14 7 3.6393 -0.9217 -5.8097 15 14 1.1128 -1.4087 -6.8371 16 1 1.2779 -1.4340 -8.3127 17 1 1.1865 -2.7939 -6.3069 18 1 -0.2064 -0.8180 -6.4967 19 6 3.9550 2.8779 -6.1625 20 6 3.0694 3.2797 -4.9804 21 6 4.2146 -1.5027 -0.1762 22 6 3.9310 -0.8582 1.1842 23 1 4.2974 0.1683 1.1852 24 6 4.6328 -1.6560 2.2852 25 16 2.1382 -0.8644 1.4776 26 8 1.6763 -2.2077 1.4407 27 8 1.8617 -0.0637 2.6185 28 1 -0.3634 -1.0236 0.0913 29 1 -0.3633 0.5908 0.8409 30 1 -0.3633 0.4328 -0.9321 31 1 1.7080 -0.1967 -2.1394 32 1 1.6523 -1.7439 -1.2615 33 1 2.5932 0.5061 -3.2104 34 1 5.0307 1.8169 -3.8743 35 1 4.8744 0.3203 -4.8253 36 1 3.8193 -1.8375 -6.0741 37 1 5.0233 3.0794 -6.0831 38 1 3.5321 2.9712 -7.1627 39 1 2.0642 3.6373 -5.2035 40 1 3.5552 3.7460 -4.1232 41 1 5.2861 -1.4756 -0.3746 42 1 3.8732 -2.5378 -0.1661 43 1 5.7075 -1.6593 2.1026 44 1 4.4305 -1.1960 3.2523 45 1 4.2610 -2.6806 2.2848 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358110549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:09 Heat of formation + Delta-G solvation = -61.918058 kcal Electronic energy + Delta-G solvation = -28202.177348 eV Core-core repulsion = 24348.531465 eV Total energy + Delta-G solvation = -3853.645883 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.99995 -37.40555 -36.98550 -36.28425 -36.16151 -34.92768 -33.14785 -32.36516 -32.12259 -27.46268 -26.67220 -25.76324 -24.83778 -22.89842 -22.08606 -21.30922 -19.59507 -19.40740 -18.82116 -18.01797 -17.15205 -16.57017 -16.46338 -15.94252 -15.85360 -15.02479 -14.80113 -14.44150 -14.10408 -14.03926 -13.65703 -13.46289 -13.27010 -13.15843 -12.86174 -12.70441 -12.40960 -12.27261 -12.21872 -12.10450 -12.01658 -11.92012 -11.78632 -11.55901 -11.45922 -11.18172 -10.82315 -10.66963 -10.58910 -10.34303 -10.14945 -9.80331 -9.44759 -9.06093 -8.95248 -8.77374 -8.38161 -7.87318 -6.09604 -4.29757 -0.16082 2.52002 2.85330 3.14544 3.24785 3.25130 3.42940 3.61157 3.97147 4.09382 4.20676 4.30802 4.40515 4.58664 4.71786 4.80661 4.85483 4.95562 5.18541 5.27022 5.32947 5.38960 5.41181 5.52953 5.61481 5.67087 5.75604 5.80334 5.84478 5.95567 6.23156 6.45996 6.52161 6.55133 6.65171 6.80359 6.94053 7.18565 7.25384 7.50728 7.59084 7.88914 8.22400 8.60746 8.76750 9.22928 9.34066 10.79628 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014891 B = 0.004215 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.899283 B = 6642.133111 C = 7078.089214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.584 4.584 3 H 0.142 0.858 4 C 0.124 3.876 5 N -0.648 5.648 6 C 0.704 3.296 7 O -0.598 6.598 8 N -0.696 5.696 9 C 0.180 3.820 10 C 0.034 3.966 11 C -0.497 4.497 12 H 0.061 0.939 13 C 0.074 3.926 14 N -0.866 5.866 15 Si 0.891 3.109 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.197 4.197 20 C -0.212 4.212 21 C 0.144 3.856 22 C -0.582 4.582 23 H 0.141 0.859 24 C -0.138 4.138 25 S 2.415 3.585 26 O -0.933 6.933 27 O -0.943 6.943 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.396 0.604 34 H 0.022 0.978 35 H 0.112 0.888 36 H 0.263 0.737 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.118 0.882 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.747 -0.697 12.322 12.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.695 4.695 3 H 0.160 0.840 4 C -0.002 4.002 5 N -0.386 5.386 6 C 0.405 3.595 7 O -0.478 6.478 8 N -0.348 5.348 9 C 0.056 3.944 10 C 0.034 3.966 11 C -0.535 4.535 12 H 0.079 0.921 13 C -0.130 4.130 14 N -0.502 5.502 15 Si 0.718 3.282 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.235 4.235 20 C -0.249 4.249 21 C 0.019 3.981 22 C -0.694 4.694 23 H 0.159 0.841 24 C -0.196 4.196 25 S 2.598 3.402 26 O -0.930 6.930 27 O -0.940 6.940 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.111 0.889 33 H 0.233 0.767 34 H 0.040 0.960 35 H 0.130 0.870 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.137 0.863 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.244 -1.212 13.046 13.293 hybrid contribution -0.725 0.095 -1.245 1.444 sum -2.969 -1.117 11.801 12.219 Atomic orbital electron populations 1.21578 0.89043 1.04035 1.05190 1.30446 1.07268 1.14042 1.17792 0.84033 1.21371 0.80423 1.01635 0.96744 1.47258 1.05166 1.56186 1.29988 1.15867 0.85172 0.78589 0.79829 1.90839 1.11847 1.66555 1.78534 1.45091 1.10170 1.58118 1.21462 1.21024 0.92061 0.96336 0.84943 1.19249 0.96346 0.85644 0.95403 1.20527 0.95817 0.93406 1.43728 0.92069 1.25003 0.95817 0.97458 0.94751 1.69879 1.21703 1.14564 1.44079 0.86591 0.82123 0.79683 0.79778 1.20555 1.21058 1.19758 1.22935 0.96591 1.09099 0.94900 1.22953 0.99506 1.03015 0.99427 1.21091 1.01937 0.93945 0.81125 1.30429 1.24124 1.09977 1.04829 0.84138 1.21547 1.02766 0.99770 0.95536 1.08425 0.78484 0.76212 0.77117 1.93560 1.78806 1.33869 1.86743 1.93563 1.83379 1.70979 1.46079 0.90626 0.90727 0.89252 0.87108 0.88931 0.76681 0.95975 0.87027 0.92638 0.91415 0.90179 0.90654 0.91377 0.86337 0.89525 0.89567 0.90911 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.21 37.16 0.34 -0.96 16 2 C -0.58 -6.26 3.21 -26.64 -0.09 -6.34 16 3 H 0.14 1.37 8.14 -51.93 -0.42 0.94 16 4 C 0.12 1.57 5.48 -4.01 -0.02 1.54 16 5 N -0.65 -9.75 2.80 -179.37 -0.50 -10.25 16 6 C 0.70 13.76 8.26 -86.92 -0.72 13.04 16 7 O -0.60 -13.59 15.64 5.29 0.08 -13.50 16 8 N -0.70 -14.05 5.07 -65.22 -0.33 -14.38 16 9 C 0.18 4.07 4.63 -4.04 -0.02 4.05 16 10 C 0.03 0.77 2.06 -155.66 -0.32 0.45 16 11 C -0.50 -11.90 8.30 -34.44 -0.29 -12.19 16 12 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 13 C 0.07 1.79 5.31 -17.82 -0.09 1.70 16 14 N -0.87 -21.86 10.19 55.43 0.56 -21.30 16 15 Si 0.89 19.08 29.54 -169.99 -5.02 14.06 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 C -0.20 -4.12 9.96 -26.70 -0.27 -4.38 16 20 C -0.21 -4.21 9.92 -26.70 -0.26 -4.47 16 21 C 0.14 1.84 5.47 -4.01 -0.02 1.82 16 22 C -0.58 -6.27 3.21 -26.63 -0.09 -6.35 16 23 H 0.14 1.42 8.14 -51.93 -0.42 1.00 16 24 C -0.14 -1.23 9.21 37.16 0.34 -0.89 16 25 S 2.42 28.49 4.03 -107.50 -0.43 28.06 16 26 O -0.93 -12.93 18.00 -57.81 -1.04 -13.97 16 27 O -0.94 -13.45 18.10 -57.81 -1.05 -14.49 16 28 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.11 1.46 5.41 -51.93 -0.28 1.18 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.40 7.50 5.29 -40.82 -0.22 7.29 16 34 H 0.02 0.50 8.05 -51.93 -0.42 0.08 16 35 H 0.11 2.89 5.91 -51.93 -0.31 2.58 16 36 H 0.26 6.53 8.32 -40.82 -0.34 6.19 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 39 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 41 H 0.12 1.66 6.90 -51.93 -0.36 1.30 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -31.05 370.62 -10.69 -41.73 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -7.04 Total: 11.45 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.50 Total: -12.99 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.27 Total: -45.92 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -2.00 Total: -41.97 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Atomic # 16 Polarization: 28.49 SS G_CDS: -0.43 Total: 28.06 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.05 -10.69 -41.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358110549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.187 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds