Wall clock time and date at job start Tue Mar 31 2020 04:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.47114 * 239.99746 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47402 * 119.99486 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 S 1.81401 * 109.47149 * 179.97438 * 11 10 9 13 13 O 1.42093 * 110.54547 * 291.62539 * 12 11 10 14 14 O 1.42105 * 110.53941 * 68.37879 * 12 11 10 15 15 N 1.65595 * 104.44822 * 179.97438 * 12 11 10 16 16 C 1.47431 * 125.65305 * 269.69355 * 15 12 11 17 17 C 1.55129 * 104.72486 * 155.81615 * 16 15 12 18 18 C 1.55164 * 101.48342 * 37.29686 * 17 16 15 19 19 H 1.08999 * 110.87179 * 82.76857 * 18 17 16 20 20 N 1.46500 * 110.71689 * 205.96890 * 18 17 16 21 21 C 1.46765 * 124.34808 * 233.52303 * 20 18 17 22 22 C 1.54479 * 105.47562 * 197.01602 * 21 20 18 23 23 C 1.54632 * 101.76217 * 334.58825 * 22 21 20 24 24 C 1.34415 * 124.35053 * 53.22147 * 20 18 17 25 25 O 1.21283 * 124.94449 * 359.57926 * 24 20 18 26 26 C 1.47028 * 125.64766 * 90.00086 * 15 12 11 27 27 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 29 29 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 30 30 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 31 31 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 32 32 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 33 33 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 34 34 H 1.08999 * 110.36259 * 274.74820 * 16 15 12 35 35 H 1.09007 * 110.36227 * 37.06904 * 16 15 12 36 36 H 1.08994 * 111.19427 * 279.19358 * 17 16 15 37 37 H 1.09001 * 110.93785 * 155.28716 * 17 16 15 38 38 H 1.09000 * 110.24591 * 316.01637 * 21 20 18 39 39 H 1.09006 * 110.24792 * 77.93013 * 21 20 18 40 40 H 1.09007 * 110.96727 * 92.69920 * 22 21 20 41 41 H 1.08998 * 110.97311 * 216.46270 * 22 21 20 42 42 H 1.09000 * 110.48337 * 143.47672 * 23 22 21 43 43 H 1.09001 * 110.47795 * 265.98155 * 23 22 21 44 44 H 1.08996 * 109.87963 * 300.44152 * 26 15 12 45 45 H 1.09005 * 109.87944 * 61.45259 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 16 2.6592 -6.3658 0.0004 13 8 3.3551 -6.4263 -1.2370 14 8 3.3568 -6.4261 1.2370 15 7 1.7089 -7.7220 0.0019 16 6 1.2223 -8.4290 1.2006 17 6 -0.0538 -9.1739 0.7282 18 6 0.3546 -9.6081 -0.7044 19 1 0.9405 -10.5269 -0.6796 20 7 -0.8282 -9.7727 -1.5530 21 6 -1.1349 -10.9859 -2.3198 22 6 -2.1882 -10.5574 -3.3654 23 6 -2.8396 -9.3369 -2.6747 24 6 -1.7750 -8.8341 -1.7248 25 8 -1.7743 -7.7420 -1.1972 26 6 1.2159 -8.4241 -1.1921 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8905 31 1 2.8720 -3.6042 -0.8894 32 1 0.8534 -5.0451 -0.8886 33 1 0.8541 -5.0445 0.8914 34 1 1.9708 -9.1391 1.5521 35 1 0.9755 -7.7160 1.9874 36 1 -0.9141 -8.5052 0.7034 37 1 -0.2538 -10.0414 1.3572 38 1 -0.2379 -11.3546 -2.8172 39 1 -1.5441 -11.7538 -1.6631 40 1 -1.7123 -10.2674 -4.3022 41 1 -2.9194 -11.3490 -3.5297 42 1 -3.0913 -8.5721 -3.4095 43 1 -3.7287 -9.6409 -2.1221 44 1 0.6098 -7.7485 -1.7955 45 1 2.0572 -8.7920 -1.7795 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360141085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:48 Heat of formation + Delta-G solvation = -107.345335 kcal Electronic energy + Delta-G solvation = -26869.023046 eV Core-core repulsion = 23013.407288 eV Total energy + Delta-G solvation = -3855.615758 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.95692 -38.16987 -36.86021 -36.61662 -35.70382 -34.58357 -32.95743 -32.11564 -30.07624 -28.47062 -27.91238 -27.71385 -23.73097 -22.94609 -22.37930 -22.18632 -20.45799 -19.25702 -18.84507 -17.64203 -17.27416 -16.81621 -16.46870 -16.21451 -15.63806 -15.53391 -14.97923 -14.45393 -14.29345 -14.16440 -13.95043 -13.79043 -13.67180 -13.39675 -13.21569 -12.94786 -12.51013 -12.22138 -11.99963 -11.99111 -11.89750 -11.86767 -11.73040 -11.68976 -11.52708 -11.40711 -11.26677 -11.16008 -10.85036 -10.81173 -10.38723 -9.87386 -9.86060 -9.46161 -9.17997 -9.04452 -8.84481 -8.34703 -5.99406 -4.02704 0.47666 2.31347 2.49536 2.87839 3.35922 3.39384 3.42742 3.94526 4.03793 4.05935 4.09892 4.27753 4.37680 4.47189 4.54114 4.60601 4.72363 4.95421 5.04218 5.07604 5.09942 5.24524 5.28438 5.29451 5.36561 5.37280 5.40091 5.47780 5.53599 5.53787 5.61417 5.88316 5.91140 6.02323 6.23223 6.32377 6.39067 6.54469 6.79216 6.94962 7.64698 7.75224 7.90966 7.98783 8.39120 9.03404 9.61409 11.11785 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015194 B = 0.002963 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.402146 B = 9447.057248 C =10650.546672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.031 3.969 10 C -0.105 4.105 11 C -0.605 4.605 12 S 2.615 3.385 13 O -0.959 6.959 14 O -0.957 6.957 15 N -1.013 6.013 16 C 0.127 3.873 17 C -0.147 4.147 18 C 0.150 3.850 19 H 0.107 0.893 20 N -0.617 5.617 21 C 0.102 3.898 22 C -0.132 4.132 23 C -0.157 4.157 24 C 0.513 3.487 25 O -0.514 6.514 26 C 0.114 3.886 27 H 0.262 0.738 28 H 0.021 0.979 29 H 0.021 0.979 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.073 0.927 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.564 -29.148 -4.313 29.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.145 4.145 11 C -0.737 4.737 12 S 2.713 3.287 13 O -0.950 6.950 14 O -0.948 6.948 15 N -0.849 5.849 16 C 0.001 3.999 17 C -0.187 4.187 18 C 0.045 3.955 19 H 0.125 0.875 20 N -0.352 5.352 21 C -0.021 4.021 22 C -0.170 4.170 23 C -0.197 4.197 24 C 0.301 3.699 25 O -0.388 6.388 26 C -0.013 4.013 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.091 0.909 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.641 -28.401 -3.994 29.053 hybrid contribution -0.348 1.062 -0.060 1.119 sum -4.989 -27.339 -4.053 28.084 Atomic orbital electron populations 1.69961 1.06079 1.26824 1.50519 1.25027 0.94883 0.99327 0.95161 0.86613 0.79554 0.82864 0.78726 1.20144 1.21256 1.20129 1.21225 0.93187 0.90930 1.51131 0.92442 1.19050 0.93507 0.90333 0.97806 1.21502 0.99368 0.91809 1.01789 1.30549 1.16267 1.15422 1.11460 1.05032 0.75283 0.74342 0.74060 1.93549 1.70289 1.85790 1.45351 1.93560 1.70065 1.85810 1.45368 1.58701 1.70480 1.43446 1.12312 1.21924 0.94588 0.96068 0.87330 1.23282 0.99361 1.01274 0.94743 1.21995 0.85126 0.98644 0.89722 0.87526 1.48292 1.22931 1.16398 1.47608 1.22117 0.99447 0.87084 0.93411 1.22601 0.98105 0.97985 0.98325 1.22357 0.98389 0.99571 0.99406 1.20966 0.83059 0.84015 0.81900 1.90799 1.76717 1.20664 1.50664 1.21936 0.97594 0.94214 0.87590 0.92867 0.96097 0.96097 0.91654 0.91681 0.85385 0.85445 0.90998 0.90149 0.88527 0.89846 0.90177 0.90968 0.89796 0.89125 0.87836 0.87845 0.90857 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.52 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.53 -15.44 9.11 -34.44 -0.31 -15.75 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 9 C 0.03 0.85 4.97 -27.89 -0.14 0.71 16 10 C -0.11 -2.31 5.16 -26.74 -0.14 -2.45 16 11 C -0.60 -10.81 6.18 37.16 0.23 -10.58 16 12 S 2.61 43.53 5.65 -107.50 -0.61 42.92 16 13 O -0.96 -18.28 17.60 -57.54 -1.01 -19.29 16 14 O -0.96 -17.99 17.60 -57.54 -1.01 -19.00 16 15 N -1.01 -13.36 3.62 -111.28 -0.40 -13.76 16 16 C 0.13 1.34 6.89 -2.41 -0.02 1.32 16 17 C -0.15 -1.32 6.56 -24.46 -0.16 -1.48 16 18 C 0.15 1.25 3.63 -66.09 -0.24 1.01 16 19 H 0.11 0.60 8.10 -51.93 -0.42 0.18 16 20 N -0.62 -4.79 2.95 -162.76 -0.48 -5.27 16 21 C 0.10 0.40 7.32 -3.12 -0.02 0.38 16 22 C -0.13 -0.44 7.18 -25.10 -0.18 -0.62 16 23 C -0.16 -0.96 6.86 -26.74 -0.18 -1.15 16 24 C 0.51 5.25 7.07 -10.86 -0.08 5.18 16 25 O -0.51 -7.70 15.18 5.56 0.08 -7.62 16 26 C 0.11 1.31 6.41 -3.06 -0.02 1.29 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.13 2.21 8.14 -51.92 -0.42 1.79 16 33 H 0.13 2.11 8.14 -51.92 -0.42 1.69 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.10 1.11 6.15 -51.93 -0.32 0.79 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.96 6.80 -51.93 -0.35 0.61 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -38.55 376.91 -10.79 -49.34 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -7.40 Total: -2.88 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -1.36 Total: -20.54 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: -0.15 Total: -45.81 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -1.94 Total: -45.91 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 43.53 SS G_CDS: -0.61 Total: 42.92 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.55 -10.79 -49.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360141085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.007 kcal (2) G-P(sol) polarization free energy of solvation -38.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds