Wall clock time and date at job start Tue Mar 31 2020 07:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 108.67802 * 2 1 4 4 C 1.55618 * 108.69641 * 242.12077 * 2 1 3 5 5 N 1.47199 * 115.57470 * 195.40250 * 4 2 1 6 6 C 1.34775 * 119.15038 * 137.22058 * 5 4 2 7 7 O 1.21592 * 120.00070 * 4.81366 * 6 5 4 8 8 N 1.34777 * 120.00480 * 184.81270 * 6 5 4 9 9 C 1.46495 * 120.00394 * 185.06644 * 8 6 5 10 10 C 1.53007 * 109.47328 * 184.77762 * 9 8 6 11 11 C 1.50698 * 115.54623 * 294.79688 * 10 9 8 12 12 H 1.07997 * 120.00202 * 99.52181 * 11 10 9 13 13 C 1.37879 * 119.99965 * 279.51723 * 11 10 9 14 14 N 1.31513 * 119.99906 * 5.39695 * 13 11 10 15 15 Si 1.86806 * 120.00138 * 185.39988 * 13 11 10 16 16 H 1.48497 * 109.46906 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47070 * 300.00317 * 15 13 11 18 18 H 1.48502 * 109.46757 * 59.99658 * 15 13 11 19 19 C 1.52994 * 117.51565 * 80.49257 * 10 9 8 20 20 C 1.52999 * 117.49830 * 149.12374 * 10 9 8 21 21 C 1.42839 * 121.70013 * 316.94215 * 5 4 2 22 22 C 1.53796 * 108.16573 * 95.97148 * 21 5 4 23 23 S 1.74657 * 112.73448 * 278.32906 * 22 21 5 24 24 O 1.42103 * 108.32841 * 176.36636 * 23 22 21 25 25 O 1.42093 * 108.32733 * 306.69959 * 23 22 21 26 26 C 1.49581 * 108.71478 * 118.16859 * 2 1 3 27 27 H 1.09002 * 109.47134 * 301.83224 * 1 2 3 28 28 H 1.09004 * 109.47112 * 61.82973 * 1 2 3 29 29 H 1.08999 * 109.47156 * 181.82482 * 1 2 3 30 30 H 1.08994 * 108.42492 * 73.75083 * 4 2 1 31 31 H 1.08994 * 108.23292 * 316.90663 * 4 2 1 32 32 H 0.96998 * 119.99636 * 5.06536 * 8 6 5 33 33 H 1.09002 * 109.47416 * 64.77884 * 9 8 6 34 34 H 1.09000 * 109.47259 * 304.78155 * 9 8 6 35 35 H 0.97000 * 120.00212 * 355.00033 * 14 13 11 36 36 H 1.09003 * 117.50177 * 214.97086 * 19 10 9 37 37 H 1.09000 * 117.49957 * 359.97438 * 19 10 9 38 38 H 1.09000 * 117.49867 * 359.97438 * 20 10 9 39 39 H 1.08997 * 117.49379 * 144.99964 * 20 10 9 40 40 H 1.08998 * 109.72802 * 215.63989 * 21 5 4 41 41 H 1.08999 * 109.72233 * 336.25959 * 21 5 4 42 42 H 1.09002 * 108.82633 * 39.17044 * 22 21 5 43 43 H 1.08999 * 108.83290 * 157.59368 * 22 21 5 44 44 H 1.09002 * 109.24135 * 90.53522 * 26 2 1 45 45 H 1.09001 * 109.21151 * 331.11790 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8790 1.0326 0.0000 4 6 2.0288 -0.6893 -1.3030 5 7 3.4450 -1.0906 -1.3074 6 6 3.7847 -2.2942 -1.8098 7 8 2.9396 -2.9960 -2.3310 8 7 5.0613 -2.7199 -1.7346 9 6 5.4535 -3.9765 -2.3776 10 6 6.9142 -4.2862 -2.0436 11 6 7.9266 -3.3147 -2.5933 12 1 8.3350 -2.5429 -1.9577 13 6 8.3315 -3.4111 -3.9077 14 7 7.7582 -4.2809 -4.7103 15 14 9.6947 -2.3062 -4.5486 16 1 9.9404 -2.6042 -5.9825 17 1 9.2904 -0.8849 -4.4011 18 1 10.9364 -2.5508 -3.7717 19 6 7.2091 -4.9190 -0.6823 20 6 7.3222 -5.7582 -1.9566 21 6 4.4692 -0.2349 -0.7983 22 6 4.7547 -0.6421 0.6570 23 16 3.6089 0.0390 1.7857 24 8 3.9067 -0.4618 3.0817 25 8 3.5653 1.4449 1.5844 26 6 2.0099 -0.6688 1.2489 27 1 -0.3633 0.5420 0.8731 28 1 -0.3633 0.4852 -0.9060 29 1 -0.3633 -1.0271 0.0327 30 1 1.8651 -0.0077 -2.1376 31 1 1.4220 -1.5788 -1.4720 32 1 5.7203 -2.1943 -1.2548 33 1 5.3397 -3.8830 -3.4576 34 1 4.8184 -4.7843 -2.0140 35 1 7.1019 -4.9040 -4.3610 36 1 8.1355 -4.6329 -0.1842 37 1 6.3625 -5.1145 -0.0241 38 1 6.5499 -6.5060 -2.1370 39 1 8.3230 -6.0239 -2.2970 40 1 5.3737 -0.3477 -1.3960 41 1 4.1331 0.8014 -0.8319 42 1 4.7186 -1.7290 0.7317 43 1 5.7553 -0.3045 0.9270 44 1 2.1343 -1.7351 1.0603 45 1 1.2714 -0.5274 2.0380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366806430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:23 Heat of formation + Delta-G solvation = -75.817433 kcal Electronic energy + Delta-G solvation = -27969.764367 eV Core-core repulsion = 24115.515762 eV Total energy + Delta-G solvation = -3854.248605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46064 -37.78104 -37.17003 -36.67791 -36.25394 -35.35650 -33.38371 -32.03008 -31.28837 -28.11382 -27.33957 -25.68216 -24.91730 -24.17328 -21.50006 -20.91312 -19.84119 -19.46221 -19.13359 -18.13927 -17.20914 -16.99004 -16.69408 -16.27427 -16.18291 -15.53260 -14.78685 -14.37977 -14.31384 -13.94837 -13.84513 -13.69599 -13.55648 -13.19044 -12.88613 -12.69627 -12.63462 -12.49468 -12.39313 -12.24972 -12.19065 -12.08995 -11.91514 -11.67608 -11.13678 -11.04142 -11.00401 -10.88524 -10.58578 -10.54557 -10.21147 -9.97789 -9.69733 -8.95275 -8.77921 -8.61800 -8.49334 -8.25860 -6.47280 -4.24917 -0.17218 2.51395 2.67757 3.30309 3.33841 3.35784 3.42092 3.54289 3.66834 4.11264 4.15499 4.18755 4.39819 4.48440 4.60999 4.64117 4.75024 4.87778 5.01296 5.17942 5.21075 5.21435 5.32447 5.33974 5.44536 5.50547 5.71433 5.74325 5.77375 5.86922 6.04223 6.14604 6.29810 6.39808 6.44290 6.54337 6.75593 6.97064 7.04913 7.09930 7.20849 8.07056 8.22444 8.28994 8.72548 8.84305 9.51564 10.91537 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.003774 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.270484 B = 7418.073988 C = 7700.752226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 H 0.093 0.907 4 C 0.121 3.879 5 N -0.633 5.633 6 C 0.697 3.303 7 O -0.592 6.592 8 N -0.716 5.716 9 C 0.173 3.827 10 C 0.004 3.996 11 C -0.578 4.578 12 H 0.052 0.948 13 C 0.031 3.969 14 N -0.898 5.898 15 Si 1.065 2.935 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.288 1.288 19 C -0.194 4.194 20 C -0.172 4.172 21 C 0.135 3.865 22 C -0.700 4.700 23 S 2.461 3.539 24 O -0.948 6.948 25 O -0.942 6.942 26 C -0.595 4.595 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.400 0.600 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.276 0.724 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.144 0.856 43 H 0.156 0.844 44 H 0.132 0.868 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.088 9.022 10.155 17.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.111 0.889 4 C -0.002 4.002 5 N -0.370 5.370 6 C 0.399 3.601 7 O -0.470 6.470 8 N -0.369 5.369 9 C 0.049 3.951 10 C 0.004 3.996 11 C -0.615 4.615 12 H 0.070 0.930 13 C -0.176 4.176 14 N -0.531 5.531 15 Si 0.894 3.106 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.214 1.214 19 C -0.231 4.231 20 C -0.210 4.210 21 C 0.008 3.992 22 C -0.830 4.830 23 S 2.643 3.357 24 O -0.946 6.946 25 O -0.939 6.939 26 C -0.724 4.724 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.236 0.764 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.162 0.838 43 H 0.174 0.826 44 H 0.150 0.850 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.648 9.427 9.013 16.837 hybrid contribution -0.372 -0.950 1.151 1.538 sum -11.020 8.477 10.164 17.223 Atomic orbital electron populations 1.21816 0.92573 1.02785 1.02686 1.20932 0.98503 1.00305 0.91454 0.88918 1.22001 0.80616 1.01756 0.95875 1.46488 1.06945 1.17024 1.66567 1.16016 0.83722 0.80882 0.79510 1.90883 1.49598 1.56190 1.50325 1.45295 1.07789 1.26198 1.57648 1.20970 0.94699 0.82459 0.96996 1.19341 0.92086 0.92963 0.95256 1.21172 1.25337 1.16218 0.98800 0.92962 1.25761 0.99537 0.99038 0.93292 1.70739 1.26251 1.18847 1.37298 0.83587 0.75427 0.75190 0.76423 1.20738 1.21488 1.21420 1.22861 1.01284 1.07695 0.91271 1.22768 1.01591 0.94961 1.01680 1.20553 0.94025 0.95759 0.88861 1.30885 1.20511 1.16133 1.15436 1.06402 0.78019 0.75840 0.75450 1.93587 1.83575 1.82097 1.35300 1.93548 1.85993 1.27838 1.86514 1.29825 1.21814 1.13236 1.07498 0.91791 0.91576 0.91854 0.90962 0.88412 0.76403 0.91718 0.94025 0.91271 0.90036 0.91388 0.91241 0.89553 0.87714 0.87713 0.83804 0.82608 0.84969 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.80 37.16 0.33 -0.58 16 2 C -0.09 -0.73 2.39 -90.92 -0.22 -0.94 16 3 H 0.09 0.69 6.87 -51.93 -0.36 0.33 16 4 C 0.12 1.25 5.35 -2.27 -0.01 1.24 16 5 N -0.63 -7.95 2.46 -179.53 -0.44 -8.40 16 6 C 0.70 12.07 7.88 -86.92 -0.68 11.39 16 7 O -0.59 -12.31 15.64 5.28 0.08 -12.23 16 8 N -0.72 -13.00 5.04 -65.22 -0.33 -13.33 16 9 C 0.17 3.70 5.38 -4.04 -0.02 3.68 16 10 C 0.00 0.10 0.90 -155.66 -0.14 -0.04 16 11 C -0.58 -14.34 8.57 -34.44 -0.30 -14.64 16 12 H 0.05 1.28 7.82 -52.49 -0.41 0.87 16 13 C 0.03 0.80 5.42 -17.82 -0.10 0.70 16 14 N -0.90 -25.10 13.61 55.43 0.75 -24.35 16 15 Si 1.07 23.40 29.91 -169.99 -5.08 18.31 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.05 7.11 56.52 0.40 -5.64 16 18 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 19 C -0.19 -3.83 9.96 -26.73 -0.27 -4.09 16 20 C -0.17 -3.68 8.97 -26.73 -0.24 -3.92 16 21 C 0.13 1.40 5.05 -5.56 -0.03 1.37 16 22 C -0.70 -6.57 5.24 37.57 0.20 -6.38 16 23 S 2.46 24.00 5.05 -107.50 -0.54 23.46 16 24 O -0.95 -12.70 18.06 -57.87 -1.04 -13.75 16 25 O -0.94 -11.16 16.40 -57.87 -0.95 -12.11 16 26 C -0.59 -4.67 5.41 35.47 0.19 -4.48 16 27 H 0.06 0.35 8.05 -51.93 -0.42 -0.07 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.10 1.16 6.81 -51.93 -0.35 0.81 16 32 H 0.40 6.64 5.75 -40.82 -0.23 6.40 16 33 H 0.06 1.59 7.63 -51.93 -0.40 1.19 16 34 H 0.04 0.88 8.05 -51.93 -0.42 0.46 16 35 H 0.28 7.68 6.08 -40.82 -0.25 7.43 16 36 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 40 H 0.10 1.17 6.85 -51.93 -0.36 0.81 16 41 H 0.10 0.86 7.46 -51.93 -0.39 0.47 16 42 H 0.14 1.41 7.37 -49.10 -0.36 1.05 16 43 H 0.16 1.20 8.14 -49.01 -0.40 0.80 16 44 H 0.13 1.04 7.95 -51.93 -0.41 0.62 16 45 H 0.14 0.82 7.66 -51.93 -0.40 0.42 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -34.31 366.31 -10.23 -44.53 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.91 Total: 9.03 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -1.29 Total: -16.69 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.02 Total: -46.07 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -1.91 Total: -38.09 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.08 Total: 18.31 kcal Atomic # 16 Polarization: 24.00 SS G_CDS: -0.54 Total: 23.46 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.31 -10.23 -44.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366806430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.284 kcal (2) G-P(sol) polarization free energy of solvation -34.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds