Wall clock time and date at job start Tue Mar 31 2020 07:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 108.79544 * 2 1 4 4 C 1.53610 * 108.76234 * 118.48052 * 2 1 3 5 5 N 1.43387 * 114.08066 * 79.11810 * 4 2 1 6 6 C 1.34773 * 120.82179 * 280.85299 * 5 4 2 7 7 O 1.21594 * 119.99908 * 354.61898 * 6 5 4 8 8 N 1.34781 * 120.00234 * 174.89033 * 6 5 4 9 9 C 1.46499 * 119.99839 * 184.75991 * 8 6 5 10 10 C 1.53004 * 109.46800 * 184.96340 * 9 8 6 11 11 C 1.50698 * 115.54903 * 303.74444 * 10 9 8 12 12 H 1.08000 * 120.00097 * 143.19526 * 11 10 9 13 13 C 1.37885 * 120.00213 * 323.20191 * 11 10 9 14 14 N 1.31508 * 119.99948 * 168.86533 * 13 11 10 15 15 Si 1.86795 * 119.99800 * 348.86665 * 13 11 10 16 16 H 1.48490 * 109.47489 * 95.51850 * 15 13 11 17 17 H 1.48500 * 109.47056 * 215.52524 * 15 13 11 18 18 H 1.48505 * 109.47322 * 335.51822 * 15 13 11 19 19 C 1.53001 * 117.49900 * 158.08079 * 10 9 8 20 20 C 1.53000 * 117.50312 * 89.42176 * 10 9 8 21 21 C 1.49441 * 118.36252 * 100.59232 * 5 4 2 22 22 C 1.44440 * 110.91853 * 278.63799 * 21 5 4 23 23 S 1.82266 * 112.51034 * 60.62906 * 22 21 5 24 24 O 1.42098 * 108.81941 * 36.55154 * 23 22 21 25 25 O 1.42096 * 108.81677 * 168.20133 * 23 22 21 26 26 C 1.54763 * 108.82707 * 241.56479 * 2 1 3 27 27 H 1.08994 * 109.47153 * 178.43056 * 1 2 3 28 28 H 1.09001 * 109.47139 * 298.44036 * 1 2 3 29 29 H 1.09001 * 109.46539 * 58.43251 * 1 2 3 30 30 H 1.08995 * 108.29251 * 318.03891 * 4 2 1 31 31 H 1.08995 * 108.62162 * 200.43525 * 4 2 1 32 32 H 0.97000 * 120.00064 * 4.76094 * 8 6 5 33 33 H 1.09004 * 109.47222 * 304.95888 * 9 8 6 34 34 H 1.09001 * 109.47623 * 64.96388 * 9 8 6 35 35 H 0.97004 * 119.99993 * 179.97438 * 14 13 11 36 36 H 1.08993 * 117.49966 * 359.97438 * 19 10 9 37 37 H 1.09000 * 117.49565 * 145.01642 * 19 10 9 38 38 H 1.09002 * 117.49614 * 214.98375 * 20 10 9 39 39 H 1.08997 * 117.49648 * 359.97438 * 20 10 9 40 40 H 1.08995 * 109.18892 * 39.00278 * 21 5 4 41 41 H 1.08998 * 109.18855 * 158.31715 * 21 5 4 42 42 H 1.08997 * 108.86988 * 181.41140 * 22 21 5 43 43 H 1.08997 * 108.86997 * 299.94485 * 22 21 5 44 44 H 1.08994 * 108.89215 * 77.26662 * 26 2 1 45 45 H 1.09001 * 108.81479 * 318.73027 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8812 1.0319 0.0000 4 6 2.0241 -0.6936 1.2784 5 7 1.9783 -2.1256 1.2222 6 6 0.8194 -2.7873 1.4106 7 8 -0.1840 -2.1781 1.7278 8 7 0.7738 -4.1251 1.2527 9 6 -0.5055 -4.8315 1.3547 10 6 -0.2643 -6.3395 1.2606 11 6 0.4619 -6.8056 0.0252 12 1 1.1705 -7.6182 0.0896 13 6 0.2219 -6.1948 -1.1875 14 7 1.0030 -6.4446 -2.2156 15 14 -1.2126 -5.0123 -1.3698 16 1 -0.7340 -3.6199 -1.1771 17 1 -1.7989 -5.1510 -2.7271 18 1 -2.2456 -5.3262 -0.3501 19 6 -1.3364 -7.2640 1.8408 20 6 0.0020 -7.0951 2.5640 21 6 3.2461 -2.8661 0.9437 22 6 3.5311 -2.8864 -0.4721 23 16 3.7399 -1.2139 -1.1659 24 8 4.3975 -0.3982 -0.2060 25 8 4.2805 -1.3251 -2.4753 26 6 2.0295 -0.6975 -1.2881 27 1 -0.3633 -1.0272 -0.0281 28 1 -0.3633 0.4894 0.9036 29 1 -0.3632 0.5380 -0.8756 30 1 1.4055 -0.3579 2.1107 31 1 3.0525 -0.3853 1.4664 32 1 1.5881 -4.6201 1.0715 33 1 -0.9746 -4.5976 2.3104 34 1 -1.1602 -4.5169 0.5420 35 1 0.8339 -6.0151 -3.0688 36 1 -2.2134 -6.7980 2.2900 37 1 -1.5161 -8.2095 1.3292 38 1 0.7024 -7.9296 2.5279 39 1 0.0058 -6.5179 3.4886 40 1 4.0682 -2.3785 1.4676 41 1 3.1492 -3.8903 1.3036 42 1 4.4463 -3.4543 -0.6394 43 1 2.7097 -3.3815 -0.9900 44 1 1.9282 -0.0070 -2.1253 45 1 1.4089 -1.5735 -1.4767 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366806431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:29 Heat of formation + Delta-G solvation = -46.861661 kcal Electronic energy + Delta-G solvation = -29095.165422 eV Core-core repulsion = 25242.172434 eV Total energy + Delta-G solvation = -3852.992989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.38412 -37.81698 -37.07694 -36.32066 -36.07444 -35.11065 -33.23357 -32.39825 -31.50658 -27.98500 -27.51999 -26.06577 -24.85384 -23.71980 -21.62648 -21.09234 -19.59935 -19.01560 -18.87249 -18.17792 -17.13642 -16.66628 -16.42288 -16.09186 -15.97800 -15.52599 -15.34092 -14.43431 -14.38917 -14.23216 -13.83362 -13.49759 -13.31454 -13.04291 -12.90752 -12.85904 -12.45470 -12.37894 -12.19084 -12.17254 -12.05457 -12.02688 -11.49331 -11.25519 -11.15198 -10.95285 -10.74059 -10.59460 -10.46694 -10.30724 -10.05535 -9.88044 -9.58809 -9.42739 -9.08240 -8.75543 -8.57088 -8.15234 -6.37617 -4.33253 -0.00536 2.56780 2.78544 3.13199 3.25982 3.27956 3.48344 3.57325 3.85900 4.08734 4.18659 4.43637 4.54691 4.64967 4.76082 4.85991 4.97638 5.02871 5.14110 5.20088 5.45523 5.53108 5.57358 5.61916 5.67859 5.75864 5.79797 5.86873 6.03279 6.05249 6.09007 6.14918 6.32724 6.40692 6.53916 6.55994 6.60340 6.76529 7.00101 7.09205 7.16555 7.51159 8.25844 8.34657 8.68016 8.95022 9.26582 10.72922 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.005453 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.451371 B = 5133.155514 C = 5579.012887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 H 0.091 0.909 4 C 0.099 3.901 5 N -0.637 5.637 6 C 0.704 3.296 7 O -0.588 6.588 8 N -0.719 5.719 9 C 0.158 3.842 10 C -0.010 4.010 11 C -0.488 4.488 12 H 0.081 0.919 13 C 0.084 3.916 14 N -0.884 5.884 15 Si 0.883 3.117 16 H -0.278 1.278 17 H -0.300 1.300 18 H -0.261 1.261 19 C -0.198 4.198 20 C -0.185 4.185 21 C 0.127 3.873 22 C -0.627 4.627 23 S 2.433 3.567 24 O -0.939 6.939 25 O -0.944 6.944 26 C -0.623 4.623 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.407 0.593 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.267 0.733 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.151 0.849 43 H 0.144 0.856 44 H 0.134 0.866 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.239 10.061 5.067 12.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.095 4.095 3 H 0.109 0.891 4 C -0.026 4.026 5 N -0.376 5.376 6 C 0.406 3.594 7 O -0.466 6.466 8 N -0.375 5.375 9 C 0.034 3.966 10 C -0.011 4.011 11 C -0.525 4.525 12 H 0.099 0.901 13 C -0.120 4.120 14 N -0.519 5.519 15 Si 0.714 3.286 16 H -0.205 1.205 17 H -0.228 1.228 18 H -0.187 1.187 19 C -0.237 4.237 20 C -0.223 4.223 21 C 0.004 3.996 22 C -0.757 4.757 23 S 2.616 3.384 24 O -0.936 6.936 25 O -0.941 6.941 26 C -0.752 4.752 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.245 0.755 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.169 0.831 43 H 0.162 0.838 44 H 0.152 0.848 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.322 10.961 4.842 12.739 hybrid contribution -1.314 -0.274 -0.472 1.423 sum 3.008 10.687 4.370 11.932 Atomic orbital electron populations 1.21997 0.93191 1.04051 1.01036 1.21568 0.98313 0.99240 0.90405 0.89076 1.21325 1.04338 0.79284 0.97652 1.47230 1.07350 1.06076 1.76947 1.15903 0.82827 0.82307 0.78412 1.90860 1.33427 1.67603 1.54742 1.45281 1.12314 1.04812 1.75061 1.21190 0.83806 0.91426 1.00154 1.19556 0.99270 0.88016 0.94298 1.20333 1.23874 1.19141 0.89166 0.90142 1.24936 0.95308 0.96058 0.95736 1.69911 1.36399 1.43391 1.02239 0.87027 0.84310 0.81246 0.75968 1.20479 1.22780 1.18722 1.23101 0.91750 1.03130 1.05701 1.22820 0.99903 1.03775 0.95769 1.19941 0.87146 1.00176 0.92372 1.29291 1.13362 1.24701 1.08340 1.07442 0.77436 0.78187 0.75361 1.93523 1.72298 1.65429 1.62323 1.93605 1.76212 1.86385 1.37873 1.30597 1.24911 1.12224 1.07482 0.90679 0.91932 0.93691 0.89164 0.87544 0.75525 0.92531 0.92634 0.92275 0.91149 0.89320 0.89786 0.90824 0.88364 0.87951 0.83104 0.83786 0.84790 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.06 37.16 0.30 -1.71 16 2 C -0.07 -0.89 2.82 -89.37 -0.25 -1.14 16 3 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.10 1.23 4.43 -5.37 -0.02 1.20 16 5 N -0.64 -8.85 2.34 -183.73 -0.43 -9.29 16 6 C 0.70 12.49 7.73 -86.92 -0.67 11.82 16 7 O -0.59 -11.88 13.44 5.28 0.07 -11.81 16 8 N -0.72 -13.32 5.08 -65.22 -0.33 -13.65 16 9 C 0.16 3.24 4.35 -4.04 -0.02 3.23 16 10 C -0.01 -0.21 1.40 -155.66 -0.22 -0.43 16 11 C -0.49 -11.99 8.89 -34.44 -0.31 -12.29 16 12 H 0.08 2.16 8.06 -52.49 -0.42 1.73 16 13 C 0.08 2.14 5.43 -17.82 -0.10 2.04 16 14 N -0.88 -23.82 13.96 55.43 0.77 -23.05 16 15 Si 0.88 20.78 24.05 -169.99 -4.09 16.69 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.26 -6.06 6.38 56.52 0.36 -5.70 16 19 C -0.20 -3.85 9.96 -26.69 -0.27 -4.12 16 20 C -0.19 -3.41 9.93 -26.70 -0.27 -3.68 16 21 C 0.13 1.44 5.13 -6.39 -0.03 1.41 16 22 C -0.63 -7.20 5.72 33.17 0.19 -7.01 16 23 S 2.43 29.54 5.20 -107.50 -0.56 28.98 16 24 O -0.94 -12.15 14.89 -57.80 -0.86 -13.01 16 25 O -0.94 -14.76 18.10 -57.80 -1.05 -15.81 16 26 C -0.62 -7.43 5.20 38.09 0.20 -7.23 16 27 H 0.07 1.31 5.71 -51.93 -0.30 1.01 16 28 H 0.06 0.84 8.03 -51.93 -0.42 0.42 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 1.15 7.41 -51.93 -0.38 0.77 16 31 H 0.11 1.14 5.76 -51.93 -0.30 0.84 16 32 H 0.41 7.15 5.72 -40.82 -0.23 6.92 16 33 H 0.06 1.12 8.06 -51.93 -0.42 0.71 16 34 H 0.06 1.26 2.52 -51.93 -0.13 1.13 16 35 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 38 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.10 0.86 7.63 -51.93 -0.40 0.47 16 41 H 0.10 1.14 6.21 -51.93 -0.32 0.82 16 42 H 0.15 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.14 1.91 7.85 -51.92 -0.41 1.51 16 44 H 0.13 1.33 8.14 -51.54 -0.42 0.91 16 45 H 0.13 1.76 7.55 -51.53 -0.39 1.37 16 LS Contribution 350.68 15.07 5.28 5.28 Total: -1.00 -32.09 350.68 -9.32 -41.41 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -6.67 Total: 12.18 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -1.46 Total: -17.93 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.01 Total: -45.99 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -1.84 Total: -40.63 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.09 Total: 16.69 kcal Atomic # 16 Polarization: 29.54 SS G_CDS: -0.56 Total: 28.98 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.09 -9.32 -41.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366806431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.452 kcal (2) G-P(sol) polarization free energy of solvation -32.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds