Wall clock time and date at job start Tue Mar 31 2020 05:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46868 * 2 1 4 4 C 1.52993 * 109.47394 * 239.99777 * 2 1 3 5 5 H 1.09002 * 109.56805 * 183.98494 * 4 2 1 6 6 C 1.50441 * 109.57006 * 63.62694 * 4 2 1 7 7 O 1.21283 * 118.48781 * 47.46452 * 6 4 2 8 8 N 1.33383 * 123.02159 * 227.47304 * 6 4 2 9 9 C 1.45652 * 124.58968 * 4.31301 * 8 6 4 10 10 C 1.52988 * 110.77388 * 338.10524 * 9 8 6 11 11 N 1.47049 * 109.56555 * 304.21829 * 4 2 1 12 12 S 1.65598 * 121.35513 * 342.53960 * 11 4 2 13 13 O 1.42111 * 104.27689 * 230.91366 * 12 11 4 14 14 O 1.42094 * 104.27759 * 358.76781 * 12 11 4 15 15 C 1.81399 * 104.44827 * 114.84187 * 12 11 4 16 16 C 1.53001 * 109.46770 * 187.13473 * 15 12 11 17 17 C 1.50703 * 115.55353 * 38.92868 * 16 15 12 18 18 H 1.07997 * 119.99946 * 272.06164 * 17 16 15 19 19 C 1.37877 * 119.99757 * 92.05842 * 17 16 15 20 20 N 1.31516 * 120.00148 * 4.09548 * 19 17 16 21 21 Si 1.86801 * 120.00023 * 184.09503 * 19 17 16 22 22 H 1.48507 * 109.46753 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47160 * 119.99935 * 21 19 17 24 24 H 1.48493 * 109.47228 * 240.00451 * 21 19 17 25 25 C 1.53008 * 117.49982 * 253.21834 * 16 15 12 26 26 C 1.52998 * 60.00198 * 252.51220 * 25 16 15 27 27 H 1.08998 * 109.47006 * 172.86970 * 1 2 3 28 28 H 1.08994 * 109.47390 * 292.86881 * 1 2 3 29 29 H 1.08996 * 109.47084 * 52.87063 * 1 2 3 30 30 H 1.09002 * 109.47298 * 119.99184 * 2 1 3 31 31 H 1.08998 * 109.47553 * 72.49297 * 3 2 1 32 32 H 1.09009 * 109.46782 * 192.49289 * 3 2 1 33 33 H 1.08997 * 109.47183 * 312.48582 * 3 2 1 34 34 H 0.96998 * 117.69950 * 184.34061 * 8 6 4 35 35 H 1.09000 * 109.21430 * 217.76832 * 9 8 6 36 36 H 1.09002 * 109.17810 * 98.41171 * 9 8 6 37 37 H 1.09005 * 109.71491 * 287.05143 * 10 9 8 38 38 H 1.08997 * 109.75421 * 166.42200 * 10 9 8 39 39 H 1.08999 * 109.46962 * 307.13355 * 15 12 11 40 40 H 1.08999 * 109.47138 * 67.13582 * 15 12 11 41 41 H 0.97000 * 119.99946 * 184.99865 * 20 19 17 42 42 H 1.09000 * 117.49282 * 0.02562 * 25 16 15 43 43 H 1.09002 * 117.49619 * 145.01762 * 25 16 15 44 44 H 1.09001 * 117.50289 * 252.51217 * 26 25 16 45 45 H 1.09005 * 117.49876 * 107.48692 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 1 3.1277 -0.7844 -1.2157 6 6 1.6144 0.0360 -2.4774 7 8 1.7867 1.2362 -2.5057 8 7 1.0561 -0.5517 -3.5366 9 6 0.7065 -1.9638 -3.6100 10 6 1.5158 -2.7765 -2.5976 11 7 1.4696 -2.0755 -1.3032 12 16 0.8029 -2.7838 0.0369 13 8 1.4331 -4.0554 0.1114 14 8 0.9758 -1.8192 1.0658 15 6 -0.9542 -2.9673 -0.3750 16 6 -1.7191 -3.4519 0.8583 17 6 -1.2834 -2.8524 2.1706 18 1 -0.4861 -3.3118 2.7359 19 6 -1.9027 -1.7174 2.6493 20 7 -2.9262 -1.2041 2.0023 21 14 -1.2880 -0.9086 4.2170 22 1 -0.1333 -1.6756 4.7497 23 1 -0.8644 0.4839 3.9223 24 1 -2.3778 -0.8917 5.2254 25 6 -2.1942 -4.9063 0.8687 26 6 -3.2053 -3.7726 0.6870 27 1 -0.3633 -1.0197 -0.1276 28 1 -0.3634 0.3993 0.9468 29 1 -0.3633 0.6203 -0.8193 30 1 1.8934 -0.5137 0.8901 31 1 1.8696 1.8882 0.9800 32 1 3.1071 1.4506 -0.2223 33 1 1.5067 2.0164 -0.7578 34 1 0.8702 -0.0001 -4.3125 35 1 0.9138 -2.3329 -4.6144 36 1 -0.3561 -2.0811 -3.3969 37 1 2.5492 -2.8592 -2.9344 38 1 1.0825 -3.7711 -2.4929 39 1 -1.3544 -2.0056 -0.6961 40 1 -1.0647 -3.6940 -1.1798 41 1 -3.3160 -0.3664 2.2976 42 1 -1.9613 -5.5179 -0.0030 43 1 -2.1914 -5.4298 1.8248 44 1 -3.8679 -3.5501 1.5234 45 1 -3.6381 -3.6382 -0.3044 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408458921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:51 Heat of formation + Delta-G solvation = -20.816504 kcal Electronic energy + Delta-G solvation = -29930.923158 eV Core-core repulsion = 26079.059572 eV Total energy + Delta-G solvation = -3851.863586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.58114 -37.33275 -36.81188 -36.76958 -35.51354 -34.69404 -32.51249 -31.99052 -29.65522 -28.73060 -26.56874 -25.82845 -25.35499 -23.80017 -21.18654 -20.96652 -19.90718 -19.14197 -18.45578 -17.24384 -17.07091 -16.62102 -16.17795 -16.01570 -15.34205 -15.11034 -14.69790 -14.54129 -14.10800 -13.74906 -13.64108 -13.30702 -13.20915 -12.89062 -12.53186 -12.29621 -12.21769 -11.94708 -11.86528 -11.73984 -11.55879 -11.16584 -11.02101 -10.89643 -10.69591 -10.52110 -10.48783 -10.32718 -10.24413 -10.09162 -9.86789 -9.63548 -9.21731 -9.14374 -8.97502 -8.62243 -8.43083 -8.10224 -6.12213 -4.25242 0.93565 2.67265 3.01616 3.33693 3.37867 3.42672 3.50603 4.40305 4.43512 4.47330 4.56384 4.75013 4.93667 5.01051 5.05280 5.16717 5.21635 5.27339 5.33848 5.48303 5.63372 5.69057 5.75134 5.86723 5.99473 6.17525 6.30568 6.31850 6.36495 6.39361 6.48240 6.52285 6.59348 6.67716 6.78944 6.85007 6.93741 7.12070 7.16365 7.20309 7.31944 7.49767 7.79808 8.15836 8.25295 8.79693 9.49981 10.93809 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.006899 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.352156 B = 4057.385727 C = 5015.492476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C -0.145 4.145 4 C 0.155 3.845 5 H 0.100 0.900 6 C 0.519 3.481 7 O -0.539 6.539 8 N -0.718 5.718 9 C 0.092 3.908 10 C 0.107 3.893 11 N -1.011 6.011 12 S 2.606 3.394 13 O -0.979 6.979 14 O -0.911 6.911 15 C -0.567 4.567 16 C 0.041 3.959 17 C -0.522 4.522 18 H 0.067 0.933 19 C 0.099 3.901 20 N -0.869 5.869 21 Si 0.890 3.110 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.289 1.289 25 C -0.212 4.212 26 C -0.128 4.128 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.029 0.971 30 H 0.158 0.842 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.396 0.604 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.133 0.867 40 H 0.094 0.906 41 H 0.262 0.738 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.170 -1.061 -11.936 13.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C -0.203 4.203 4 C 0.046 3.954 5 H 0.118 0.882 6 C 0.305 3.695 7 O -0.416 6.416 8 N -0.371 5.371 9 C -0.034 4.034 10 C -0.020 4.020 11 N -0.848 5.848 12 S 2.707 3.293 13 O -0.969 6.969 14 O -0.901 6.901 15 C -0.698 4.698 16 C 0.039 3.961 17 C -0.559 4.559 18 H 0.085 0.915 19 C -0.107 4.107 20 N -0.504 5.504 21 Si 0.717 3.283 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.215 1.215 25 C -0.249 4.249 26 C -0.166 4.166 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.174 0.826 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.231 0.769 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.151 0.849 40 H 0.113 0.887 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.113 0.887 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.645 -0.749 -10.932 12.815 hybrid contribution -0.527 0.667 -0.339 0.915 sum 6.119 -0.082 -11.271 12.825 Atomic orbital electron populations 1.22129 0.93391 1.00642 1.01937 1.22525 0.98136 0.96745 0.96776 1.22044 1.00619 0.96032 1.01617 1.21327 0.99046 0.80402 0.94671 0.88226 1.20494 0.76549 0.87949 0.84506 1.90703 1.55728 1.14437 1.80759 1.45324 1.63554 1.10608 1.17586 1.21803 1.00113 0.81148 1.00357 1.21645 1.01644 0.95478 0.83206 1.58553 1.75529 1.25094 1.25613 1.05565 0.77108 0.73110 0.73501 1.93463 1.74317 1.43739 1.85377 1.93598 1.84348 1.56641 1.55485 1.30162 1.22900 1.09289 1.07488 1.18253 0.94444 0.92362 0.91076 1.20496 1.20150 1.11716 1.03554 0.91479 1.24774 0.92930 0.96289 0.96711 1.70017 1.21020 1.18777 1.40617 0.86561 0.78780 0.80060 0.82914 1.19190 1.20311 1.21541 1.23215 1.08468 0.92442 1.00796 1.22460 0.93442 1.00448 1.00293 0.93607 0.90847 0.95224 0.82565 0.93188 0.93486 0.90717 0.76872 0.89486 0.91086 0.90016 0.88168 0.84907 0.88694 0.92840 0.91519 0.89722 0.88743 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 7.41 37.16 0.28 -2.15 16 2 C -0.12 -2.12 2.15 -90.62 -0.19 -2.32 16 3 C -0.15 -2.38 8.11 37.16 0.30 -2.08 16 4 C 0.15 2.34 2.99 -68.91 -0.21 2.13 16 5 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 6 C 0.52 7.57 6.40 -11.73 -0.08 7.50 16 7 O -0.54 -9.21 14.14 5.56 0.08 -9.14 16 8 N -0.72 -7.96 5.42 -61.32 -0.33 -8.30 16 9 C 0.09 0.80 7.34 -4.50 -0.03 0.77 16 10 C 0.11 1.14 6.44 -3.63 -0.02 1.11 16 11 N -1.01 -15.01 2.91 -107.71 -0.31 -15.33 16 12 S 2.61 50.18 3.87 -107.50 -0.42 49.77 16 13 O -0.98 -20.99 17.74 -57.54 -1.02 -22.01 16 14 O -0.91 -19.67 9.14 -57.54 -0.53 -20.20 16 15 C -0.57 -10.90 5.54 37.16 0.21 -10.69 16 16 C 0.04 0.94 1.87 -155.65 -0.29 0.64 16 17 C -0.52 -13.46 6.27 -34.44 -0.22 -13.68 16 18 H 0.07 1.80 7.82 -52.49 -0.41 1.39 16 19 C 0.10 2.58 5.41 -17.82 -0.10 2.48 16 20 N -0.87 -22.78 12.06 55.43 0.67 -22.11 16 21 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 C -0.21 -4.43 9.88 -26.73 -0.26 -4.69 16 26 C -0.13 -2.81 8.91 -26.73 -0.24 -3.05 16 27 H 0.05 0.90 1.59 -30.84 -0.05 0.85 16 28 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 29 H 0.03 0.55 7.49 -51.93 -0.39 0.16 16 30 H 0.16 2.97 5.21 -56.44 -0.29 2.68 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.69 8.09 -51.92 -0.42 0.27 16 33 H 0.07 1.31 5.76 -51.93 -0.30 1.01 16 34 H 0.40 3.74 8.80 -40.82 -0.36 3.38 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.95 7.80 -51.93 -0.41 0.54 16 39 H 0.13 2.58 6.21 -51.92 -0.32 2.26 16 40 H 0.09 1.50 7.94 -51.92 -0.41 1.09 16 41 H 0.26 6.65 8.32 -40.82 -0.34 6.31 16 42 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 43 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 44 H 0.09 2.27 7.76 -51.93 -0.40 1.87 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 350.86 15.07 5.29 5.29 Total: -1.00 -31.51 350.86 -9.15 -40.67 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.70 Total: 9.02 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -0.86 Total: -24.02 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.02 Total: -45.73 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: -1.47 Total: -51.34 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 50.18 SS G_CDS: -0.42 Total: 49.77 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.51 -9.15 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408458921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.850 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds