Wall clock time and date at job start Tue Mar 31 2020 05:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46868 * 2 1 4 4 C 1.52993 * 109.47394 * 239.99777 * 2 1 3 5 5 H 1.09002 * 109.56805 * 183.98494 * 4 2 1 6 6 C 1.50441 * 109.57006 * 63.62694 * 4 2 1 7 7 O 1.21283 * 118.48781 * 47.46452 * 6 4 2 8 8 N 1.33383 * 123.02159 * 227.47304 * 6 4 2 9 9 C 1.45652 * 124.58968 * 4.31301 * 8 6 4 10 10 C 1.52988 * 110.77388 * 338.10524 * 9 8 6 11 11 N 1.47049 * 109.56555 * 304.21829 * 4 2 1 12 12 S 1.65598 * 121.35513 * 342.53960 * 11 4 2 13 13 O 1.42111 * 104.27689 * 230.91366 * 12 11 4 14 14 O 1.42094 * 104.27759 * 358.76781 * 12 11 4 15 15 C 1.81399 * 104.44827 * 114.84187 * 12 11 4 16 16 C 1.53001 * 109.46770 * 187.13473 * 15 12 11 17 17 C 1.50703 * 115.55353 * 38.92868 * 16 15 12 18 18 H 1.07997 * 119.99946 * 272.06164 * 17 16 15 19 19 C 1.37877 * 119.99757 * 92.05842 * 17 16 15 20 20 N 1.31516 * 120.00148 * 4.09548 * 19 17 16 21 21 Si 1.86801 * 120.00023 * 184.09503 * 19 17 16 22 22 H 1.48507 * 109.46753 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47160 * 119.99935 * 21 19 17 24 24 H 1.48493 * 109.47228 * 240.00451 * 21 19 17 25 25 C 1.53008 * 117.49982 * 253.21834 * 16 15 12 26 26 C 1.52998 * 60.00198 * 252.51220 * 25 16 15 27 27 H 1.08998 * 109.47006 * 172.86970 * 1 2 3 28 28 H 1.08994 * 109.47390 * 292.86881 * 1 2 3 29 29 H 1.08996 * 109.47084 * 52.87063 * 1 2 3 30 30 H 1.09002 * 109.47298 * 119.99184 * 2 1 3 31 31 H 1.08998 * 109.47553 * 72.49297 * 3 2 1 32 32 H 1.09009 * 109.46782 * 192.49289 * 3 2 1 33 33 H 1.08997 * 109.47183 * 312.48582 * 3 2 1 34 34 H 0.96998 * 117.69950 * 184.34061 * 8 6 4 35 35 H 1.09000 * 109.21430 * 217.76832 * 9 8 6 36 36 H 1.09002 * 109.17810 * 98.41171 * 9 8 6 37 37 H 1.09005 * 109.71491 * 287.05143 * 10 9 8 38 38 H 1.08997 * 109.75421 * 166.42200 * 10 9 8 39 39 H 1.08999 * 109.46962 * 307.13355 * 15 12 11 40 40 H 1.08999 * 109.47138 * 67.13582 * 15 12 11 41 41 H 0.97000 * 119.99946 * 184.99865 * 20 19 17 42 42 H 1.09000 * 117.49282 * 0.02562 * 25 16 15 43 43 H 1.09002 * 117.49619 * 145.01762 * 25 16 15 44 44 H 1.09001 * 117.50289 * 252.51217 * 26 25 16 45 45 H 1.09005 * 117.49876 * 107.48692 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 1 3.1277 -0.7844 -1.2157 6 6 1.6144 0.0360 -2.4774 7 8 1.7867 1.2362 -2.5057 8 7 1.0561 -0.5517 -3.5366 9 6 0.7065 -1.9638 -3.6100 10 6 1.5158 -2.7765 -2.5976 11 7 1.4696 -2.0755 -1.3032 12 16 0.8029 -2.7838 0.0369 13 8 1.4331 -4.0554 0.1114 14 8 0.9758 -1.8192 1.0658 15 6 -0.9542 -2.9673 -0.3750 16 6 -1.7191 -3.4519 0.8583 17 6 -1.2834 -2.8524 2.1706 18 1 -0.4861 -3.3118 2.7359 19 6 -1.9027 -1.7174 2.6493 20 7 -2.9262 -1.2041 2.0023 21 14 -1.2880 -0.9086 4.2170 22 1 -0.1333 -1.6756 4.7497 23 1 -0.8644 0.4839 3.9223 24 1 -2.3778 -0.8917 5.2254 25 6 -2.1942 -4.9063 0.8687 26 6 -3.2053 -3.7726 0.6870 27 1 -0.3633 -1.0197 -0.1276 28 1 -0.3634 0.3993 0.9468 29 1 -0.3633 0.6203 -0.8193 30 1 1.8934 -0.5137 0.8901 31 1 1.8696 1.8882 0.9800 32 1 3.1071 1.4506 -0.2223 33 1 1.5067 2.0164 -0.7578 34 1 0.8702 -0.0001 -4.3125 35 1 0.9138 -2.3329 -4.6144 36 1 -0.3561 -2.0811 -3.3969 37 1 2.5492 -2.8592 -2.9344 38 1 1.0825 -3.7711 -2.4929 39 1 -1.3544 -2.0056 -0.6961 40 1 -1.0647 -3.6940 -1.1798 41 1 -3.3160 -0.3664 2.2976 42 1 -1.9613 -5.5179 -0.0030 43 1 -2.1914 -5.4298 1.8248 44 1 -3.8679 -3.5501 1.5234 45 1 -3.6381 -3.6382 -0.3044 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408458921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:50 Heat of formation + Delta-G solvation = -43.760303 kcal Electronic energy + Delta-G solvation = -29931.918076 eV Core-core repulsion = 26079.059572 eV Total energy + Delta-G solvation = -3852.858504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.69568 -38.80534 -38.46729 -37.88634 -36.96310 -36.04116 -33.97658 -33.68692 -30.79600 -30.11680 -28.08214 -27.32562 -26.91205 -24.75773 -22.88005 -22.21472 -21.48848 -20.56683 -19.70716 -18.48506 -18.30635 -18.17254 -17.38080 -17.35757 -16.84093 -16.47513 -16.36980 -15.86895 -15.48910 -15.22853 -14.88662 -14.80805 -14.56457 -14.12415 -13.70830 -13.65844 -13.61809 -13.51937 -13.24454 -13.16554 -13.02788 -12.92365 -12.77589 -12.46434 -12.37320 -12.10609 -11.99091 -11.94012 -11.64490 -11.61700 -11.45137 -11.24772 -10.97642 -10.47339 -10.26958 -10.09663 -9.81140 -9.76785 -8.13048 -6.26200 -0.52932 1.36578 1.43688 1.52499 1.56947 1.83160 2.36489 2.45797 3.03221 3.15535 3.33046 3.39280 3.54146 3.62549 3.86481 3.97586 4.04331 4.15119 4.21049 4.32173 4.43546 4.53292 4.59595 4.61588 4.64671 4.72090 4.80922 4.92744 4.97159 5.02013 5.03685 5.04308 5.14533 5.23674 5.32963 5.46141 5.50014 5.57368 5.73173 5.76409 5.79375 5.94194 6.26245 6.30791 6.78049 7.23419 7.48766 8.92204 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.006899 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.352156 B = 4057.385727 C = 5015.492476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.123 4.123 3 C -0.138 4.138 4 C 0.155 3.845 5 H 0.119 0.881 6 C 0.518 3.482 7 O -0.571 6.571 8 N -0.706 5.706 9 C 0.088 3.912 10 C 0.090 3.910 11 N -1.006 6.006 12 S 2.613 3.387 13 O -1.004 7.004 14 O -0.944 6.944 15 C -0.562 4.562 16 C 0.011 3.989 17 C -0.527 4.527 18 H 0.045 0.955 19 C 0.072 3.928 20 N -0.882 5.882 21 Si 0.915 3.085 22 H -0.275 1.275 23 H -0.279 1.279 24 H -0.282 1.282 25 C -0.199 4.199 26 C -0.128 4.128 27 H 0.045 0.955 28 H 0.038 0.962 29 H 0.031 0.969 30 H 0.141 0.859 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.407 0.593 35 H 0.135 0.865 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.261 0.739 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.670 -2.157 -14.869 16.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.144 4.144 3 C -0.196 4.196 4 C 0.046 3.954 5 H 0.136 0.864 6 C 0.303 3.697 7 O -0.450 6.450 8 N -0.358 5.358 9 C -0.037 4.037 10 C -0.034 4.034 11 N -0.845 5.845 12 S 2.714 3.286 13 O -0.994 6.994 14 O -0.934 6.934 15 C -0.694 4.694 16 C 0.009 3.991 17 C -0.565 4.565 18 H 0.064 0.936 19 C -0.132 4.132 20 N -0.518 5.518 21 Si 0.743 3.257 22 H -0.200 1.200 23 H -0.205 1.205 24 H -0.208 1.208 25 C -0.236 4.236 26 C -0.167 4.167 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.158 0.842 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.244 0.756 35 H 0.153 0.847 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.134 0.866 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.070 0.930 42 H 0.119 0.881 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.125 -1.886 -13.879 15.714 hybrid contribution -0.664 0.945 0.537 1.273 sum 6.461 -0.941 -13.341 14.853 Atomic orbital electron populations 1.22034 0.95028 1.00292 0.99996 1.22375 0.96662 0.97562 0.97756 1.21967 1.01448 0.95224 1.00977 1.21270 0.99985 0.80184 0.93938 0.86366 1.20296 0.76981 0.87443 0.84973 1.90696 1.57344 1.15561 1.81428 1.45266 1.61803 1.11899 1.16787 1.22083 0.99980 0.79291 1.02318 1.22159 1.03835 0.96145 0.81301 1.58142 1.74898 1.25027 1.26391 1.05117 0.77117 0.72434 0.73890 1.93430 1.74810 1.45005 1.86143 1.93589 1.84731 1.57211 1.57843 1.30022 1.22267 1.10174 1.06936 1.18364 0.95490 0.94012 0.91211 1.20574 1.19248 1.11654 1.04978 0.93638 1.25088 0.93292 0.96827 0.97973 1.70040 1.21546 1.18959 1.41299 0.86167 0.78342 0.79412 0.81828 1.20005 1.20474 1.20847 1.23289 1.06611 0.91788 1.01901 1.22361 0.92721 1.01283 1.00340 0.93628 0.94230 0.95048 0.84202 0.93746 0.91880 0.91622 0.75604 0.84727 0.90622 0.87739 0.86623 0.85222 0.84699 0.92984 0.88100 0.90530 0.91532 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.62 7.41 71.98 0.53 -4.08 16 2 C -0.12 -4.31 2.15 -10.79 -0.02 -4.33 16 3 C -0.14 -4.55 8.11 71.98 0.58 -3.96 16 4 C 0.16 4.43 2.99 44.06 0.13 4.56 16 5 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 6 C 0.52 13.94 6.40 87.79 0.56 14.50 16 7 O -0.57 -18.69 14.14 -3.04 -0.04 -18.74 16 8 N -0.71 -13.09 5.42 -467.07 -2.53 -15.63 16 9 C 0.09 1.11 7.34 86.54 0.63 1.74 16 10 C 0.09 1.53 6.44 86.23 0.56 2.09 16 11 N -1.01 -27.45 2.91 -494.69 -1.44 -28.89 16 12 S 2.61 97.80 3.87 -56.49 -0.22 97.58 16 13 O -1.00 -41.67 17.74 -127.65 -2.26 -43.93 16 14 O -0.94 -41.46 9.14 -127.65 -1.17 -42.62 16 15 C -0.56 -20.49 5.54 71.98 0.40 -20.09 16 16 C 0.01 0.50 1.87 -52.92 -0.10 0.40 16 17 C -0.53 -27.61 6.27 25.60 0.16 -27.45 16 18 H 0.05 2.52 7.82 -2.91 -0.02 2.50 16 19 C 0.07 3.84 5.41 84.65 0.46 4.30 16 20 N -0.88 -46.99 12.06 21.45 0.26 -46.73 16 21 Si 0.92 44.68 29.54 68.60 2.03 46.71 16 22 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 24 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 25 C -0.20 -7.91 9.88 30.60 0.30 -7.61 16 26 C -0.13 -5.49 8.91 30.60 0.27 -5.22 16 27 H 0.05 1.80 1.59 -15.80 -0.03 1.77 16 28 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.03 1.18 7.49 -2.39 -0.02 1.16 16 30 H 0.14 5.47 5.21 -73.90 -0.38 5.09 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.82 8.09 -2.38 -0.02 1.80 16 33 H 0.07 2.30 5.76 -2.39 -0.01 2.28 16 34 H 0.41 6.19 8.80 -92.71 -0.82 5.38 16 35 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.12 1.65 7.80 -2.39 -0.02 1.63 16 39 H 0.13 4.84 6.21 -2.39 -0.01 4.82 16 40 H 0.13 3.71 7.94 -2.39 -0.02 3.69 16 41 H 0.26 13.52 8.32 -92.71 -0.77 12.75 16 42 H 0.10 3.30 8.08 -2.39 -0.02 3.28 16 43 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 44 H 0.07 3.21 7.76 -2.39 -0.02 3.19 16 45 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 Total: -1.00 -70.25 350.86 -1.10 -71.35 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.19 Total: 26.05 kcal Atomic # 6 Polarization: -49.62 SS G_CDS: 4.47 Total: -45.15 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -3.72 Total: -91.25 kcal Atomic # 8 Polarization: -101.82 SS G_CDS: -3.47 Total: -105.29 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 97.80 SS G_CDS: -0.22 Total: 97.58 kcal Total: -70.25 -1.10 -71.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408458921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.592 kcal (2) G-P(sol) polarization free energy of solvation -70.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds