Wall clock time and date at job start Tue Mar 31 2020 05:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.58124 * 2 1 4 4 N 1.34782 * 120.00404 * 23.70433 * 3 2 1 5 5 O 1.21283 * 120.00061 * 203.70580 * 3 2 1 6 6 C 1.53187 * 109.58938 * 239.57305 * 2 1 3 7 7 C 1.53040 * 109.31000 * 294.84886 * 6 2 1 8 8 C 1.53041 * 109.53851 * 298.63085 * 7 6 2 9 9 C 1.52763 * 109.38195 * 61.23847 * 8 7 6 10 10 N 1.46919 * 109.58555 * 120.28028 * 2 1 3 11 11 S 1.65607 * 120.63208 * 246.15554 * 10 2 1 12 12 O 1.42100 * 104.27624 * 164.77770 * 11 10 2 13 13 O 1.42107 * 104.27497 * 36.92337 * 11 10 2 14 14 C 1.81400 * 104.44876 * 280.85157 * 11 10 2 15 15 C 1.53001 * 109.47077 * 186.36614 * 14 11 10 16 16 C 1.50703 * 115.55199 * 304.91212 * 15 14 11 17 17 H 1.07997 * 120.00142 * 99.61103 * 16 15 14 18 18 C 1.37874 * 119.99833 * 279.62006 * 16 15 14 19 19 N 1.31519 * 120.00129 * 355.58543 * 18 16 15 20 20 Si 1.86805 * 120.00291 * 175.59094 * 18 16 15 21 21 H 1.48496 * 109.46861 * 59.99300 * 20 18 16 22 22 H 1.48504 * 109.46581 * 299.99477 * 20 18 16 23 23 H 1.48498 * 109.47002 * 179.97438 * 20 18 16 24 24 C 1.53006 * 117.51603 * 90.60707 * 15 14 11 25 25 C 1.53001 * 117.50037 * 159.23776 * 15 14 11 26 26 H 1.09000 * 109.47274 * 299.71876 * 1 2 3 27 27 H 1.08997 * 109.47338 * 59.71961 * 1 2 3 28 28 H 1.09002 * 109.46723 * 179.71899 * 1 2 3 29 29 H 0.96995 * 119.99432 * 4.23293 * 4 3 2 30 30 H 0.96993 * 119.99579 * 184.23543 * 4 3 2 31 31 H 1.09003 * 109.49805 * 54.79231 * 6 2 1 32 32 H 1.08991 * 109.50015 * 174.89243 * 6 2 1 33 33 H 1.08998 * 109.46698 * 58.65205 * 7 6 2 34 34 H 1.09007 * 109.46209 * 178.61467 * 7 6 2 35 35 H 1.08993 * 109.50006 * 181.32176 * 8 7 6 36 36 H 1.09003 * 109.49654 * 301.38700 * 8 7 6 37 37 H 1.09005 * 109.50988 * 185.70622 * 9 8 7 38 38 H 1.09005 * 109.42555 * 65.42770 * 9 8 7 39 39 H 1.08998 * 109.46925 * 66.37315 * 14 11 10 40 40 H 1.08997 * 109.47074 * 306.36820 * 14 11 10 41 41 H 0.96997 * 119.99665 * 5.32292 * 19 18 16 42 42 H 1.08996 * 117.49807 * 214.96852 * 24 15 14 43 43 H 1.08994 * 117.49992 * 359.97438 * 24 15 14 44 44 H 1.08997 * 117.49403 * 359.97438 * 25 15 14 45 45 H 1.08995 * 117.49474 * 144.97902 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0351 1.4198 0.0000 4 7 1.2540 2.4130 0.4692 5 8 3.1444 1.6689 -0.4223 6 6 2.0436 -0.7309 -1.2444 7 6 1.6415 -2.2055 -1.1673 8 6 2.2801 -2.8463 0.0671 9 6 1.7741 -2.1403 1.3238 10 7 2.0225 -0.6979 1.1953 11 16 2.8481 0.1241 2.3723 12 8 2.8366 -0.7558 3.4880 13 8 2.2059 1.3904 2.4313 14 6 4.5292 0.2930 1.7120 15 6 5.4383 0.9022 2.7813 16 6 4.9747 2.2154 3.3573 17 1 4.4676 2.2380 4.3105 18 6 5.1980 3.3880 2.6673 19 7 5.8910 3.3715 1.5496 20 14 4.5163 5.0001 3.3199 21 1 5.0779 5.2650 4.6688 22 1 3.0365 4.9121 3.4082 23 1 4.8930 6.1047 2.4016 24 6 6.1716 -0.0604 3.7176 25 6 6.9460 0.6893 2.6316 26 1 -0.3634 0.5095 0.8925 27 1 -0.3634 0.5182 -0.8874 28 1 -0.3633 -1.0277 -0.0050 29 1 0.3920 2.2070 0.8632 30 1 1.5541 3.3337 0.4128 31 1 1.6075 -0.2811 -2.1364 32 1 3.1297 -0.6519 -1.2905 33 1 0.5566 -2.2829 -1.0963 34 1 1.9844 -2.7228 -2.0634 35 1 2.0124 -3.9020 0.1086 36 1 3.3641 -2.7478 0.0085 37 1 2.3026 -2.5260 2.1957 38 1 0.7044 -2.3185 1.4340 39 1 4.5122 0.9424 0.8367 40 1 4.9086 -0.6888 1.4288 41 1 6.1790 2.5267 1.1700 42 1 6.3189 0.2563 4.7501 43 1 6.0062 -1.1278 3.5722 44 1 7.2901 0.1149 1.7715 45 1 7.6025 1.4993 2.9494 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451390656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:21 Heat of formation + Delta-G solvation = -77.005463 kcal Electronic energy + Delta-G solvation = -29974.666846 eV Core-core repulsion = 26120.366723 eV Total energy + Delta-G solvation = -3854.300122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.33691 -37.77040 -36.94423 -36.19697 -35.12139 -33.63060 -32.36214 -31.93821 -31.84618 -28.20841 -27.56723 -24.85212 -24.25991 -23.81616 -21.31428 -20.70983 -20.22575 -19.35945 -18.10245 -17.67321 -16.81957 -16.44257 -16.16445 -15.82894 -15.29316 -14.66136 -14.47019 -14.37974 -13.95250 -13.75223 -13.66408 -13.43505 -13.32859 -13.06315 -12.87977 -12.48131 -12.41973 -12.15260 -11.70804 -11.56792 -11.26468 -11.22942 -11.19978 -11.06362 -10.96139 -10.82448 -10.70758 -10.52817 -10.39828 -10.23675 -10.02613 -9.57613 -9.44546 -8.95907 -8.89393 -8.64606 -8.40229 -8.08950 -6.30919 -4.12397 0.99621 2.62905 3.46552 3.48327 3.54301 3.70444 3.74440 4.50998 4.55999 4.58247 4.68010 4.77041 4.87006 5.04068 5.07158 5.10875 5.16790 5.19651 5.36648 5.44477 5.47408 5.59066 5.67214 5.71891 5.73463 5.84690 5.90780 5.97070 6.04588 6.06102 6.18796 6.24216 6.33326 6.34136 6.56766 6.61569 6.74201 6.87923 7.12900 7.26422 7.32823 7.77543 8.15668 8.42438 8.65556 8.89924 9.68822 11.08206 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015116 B = 0.006668 C = 0.005668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.888888 B = 4198.414939 C = 4938.543201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 C 0.501 3.499 4 N -0.808 5.808 5 O -0.520 6.520 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.138 4.138 9 C 0.119 3.881 10 N -0.998 5.998 11 S 2.607 3.393 12 O -0.973 6.973 13 O -0.933 6.933 14 C -0.573 4.573 15 C 0.030 3.970 16 C -0.601 4.601 17 H 0.057 0.943 18 C 0.046 3.954 19 N -0.885 5.885 20 Si 1.060 2.940 21 H -0.289 1.289 22 H -0.279 1.279 23 H -0.282 1.282 24 C -0.194 4.194 25 C -0.166 4.166 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.399 0.601 30 H 0.405 0.595 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.153 0.847 40 H 0.092 0.908 41 H 0.278 0.722 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.111 -10.211 -6.610 17.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.077 3.923 3 C 0.282 3.718 4 N -0.370 5.370 5 O -0.396 6.396 6 C -0.156 4.156 7 C -0.152 4.152 8 C -0.177 4.177 9 C -0.006 4.006 10 N -0.835 5.835 11 S 2.706 3.294 12 O -0.964 6.964 13 O -0.922 6.922 14 C -0.706 4.706 15 C 0.028 3.972 16 C -0.638 4.638 17 H 0.075 0.925 18 C -0.163 4.163 19 N -0.517 5.517 20 Si 0.887 3.113 21 H -0.215 1.215 22 H -0.205 1.205 23 H -0.208 1.208 24 C -0.231 4.231 25 C -0.206 4.206 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.228 0.772 30 H 0.236 0.764 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.170 0.830 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.824 -8.307 -6.364 15.790 hybrid contribution 0.291 -1.664 -0.033 1.690 sum -11.533 -9.971 -6.397 16.533 Atomic orbital electron populations 1.22263 0.93570 1.03555 1.02788 1.20307 0.95111 0.89555 0.87362 1.20239 0.85549 0.87303 0.78733 1.43491 1.22439 1.09709 1.61390 1.90793 1.18347 1.83811 1.46692 1.21802 1.03056 0.95199 0.95500 1.21507 1.00706 0.95030 0.97987 1.21885 1.01417 0.99377 0.95042 1.21318 1.01480 0.79070 0.98768 1.58331 1.71911 1.17856 1.35356 1.05200 0.77351 0.73471 0.73337 1.93462 1.87712 1.66551 1.48634 1.93561 1.73022 1.41129 1.84528 1.30337 1.20335 1.07564 1.12345 1.18506 0.89928 0.95419 0.93369 1.21292 1.44299 0.90333 1.07857 0.92477 1.25679 0.93485 1.02237 0.94882 1.70694 1.30890 1.31055 1.19071 0.83709 0.76885 0.75266 0.75396 1.21546 1.20505 1.20774 1.22990 1.07950 0.95834 0.96331 1.22784 0.96788 1.02014 0.98971 0.91364 0.90987 0.90811 0.77171 0.76405 0.90745 0.89873 0.91527 0.91516 0.90753 0.91344 0.88582 0.91327 0.82986 0.88936 0.91053 0.89506 0.91031 0.91393 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 7.61 37.16 0.28 -1.41 16 2 C 0.17 2.38 0.95 -132.65 -0.13 2.25 16 3 C 0.50 8.91 4.31 -10.98 -0.05 8.86 16 4 N -0.81 -12.79 6.85 31.22 0.21 -12.57 16 5 O -0.52 -11.38 14.17 5.56 0.08 -11.30 16 6 C -0.12 -1.43 4.62 -26.61 -0.12 -1.55 16 7 C -0.11 -1.09 5.68 -26.69 -0.15 -1.24 16 8 C -0.14 -1.42 6.07 -26.83 -0.16 -1.58 16 9 C 0.12 1.50 5.94 -3.93 -0.02 1.48 16 10 N -1.00 -15.78 2.92 -101.14 -0.30 -16.08 16 11 S 2.61 55.58 4.38 -107.50 -0.47 55.11 16 12 O -0.97 -22.37 16.41 -57.54 -0.94 -23.31 16 13 O -0.93 -21.49 13.26 -57.54 -0.76 -22.25 16 14 C -0.57 -13.21 5.87 37.16 0.22 -12.99 16 15 C 0.03 0.78 1.04 -155.65 -0.16 0.61 16 16 C -0.60 -17.23 7.58 -34.44 -0.26 -17.49 16 17 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 18 C 0.05 1.34 5.44 -17.82 -0.10 1.25 16 19 N -0.89 -26.60 13.55 55.43 0.75 -25.85 16 20 Si 1.06 26.06 29.91 -169.99 -5.08 20.97 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C -0.19 -4.50 9.93 -26.72 -0.27 -4.76 16 25 C -0.17 -3.99 8.64 -26.73 -0.23 -4.22 16 26 H 0.07 0.71 6.81 -51.93 -0.35 0.36 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.64 5.74 -51.93 -0.30 0.34 16 29 H 0.40 5.13 6.71 -40.82 -0.27 4.85 16 30 H 0.40 6.54 8.93 -40.82 -0.36 6.17 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.20 7.69 -51.93 -0.40 0.80 16 33 H 0.07 0.53 6.49 -51.93 -0.34 0.20 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.10 1.31 6.80 -51.93 -0.35 0.96 16 38 H 0.07 0.72 7.52 -51.93 -0.39 0.33 16 39 H 0.15 3.79 4.86 -51.92 -0.25 3.54 16 40 H 0.09 1.86 8.09 -51.93 -0.42 1.44 16 41 H 0.28 8.36 6.17 -40.82 -0.25 8.11 16 42 H 0.09 1.99 8.14 -51.93 -0.42 1.57 16 43 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.09 2.23 8.14 -51.93 -0.42 1.81 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -35.70 353.33 -9.04 -44.74 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -6.70 Total: 16.02 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: -1.15 Total: -30.80 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.67 Total: -54.50 kcal Atomic # 8 Polarization: -55.24 SS G_CDS: -1.63 Total: -56.86 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -5.08 Total: 20.97 kcal Atomic # 16 Polarization: 55.58 SS G_CDS: -0.47 Total: 55.11 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.70 -9.04 -44.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451390656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.265 kcal (2) G-P(sol) polarization free energy of solvation -35.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds