Wall clock time and date at job start Tue Mar 31 2020 05:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50709 * 109.69807 * 2 1 4 4 N 1.34779 * 119.99988 * 330.95147 * 3 2 1 5 5 O 1.21272 * 119.99857 * 150.95237 * 3 2 1 6 6 C 1.52758 * 109.43491 * 120.16292 * 2 1 3 7 7 C 1.53043 * 109.38354 * 65.42559 * 6 2 1 8 8 C 1.53041 * 109.53521 * 61.24108 * 7 6 2 9 9 C 1.53199 * 109.31096 * 298.63465 * 8 7 6 10 10 N 1.46921 * 108.77792 * 54.63922 * 9 8 7 11 11 S 1.65597 * 120.63319 * 126.36752 * 10 9 8 12 12 O 1.42098 * 104.27651 * 145.40434 * 11 10 9 13 13 O 1.42091 * 104.27702 * 17.53997 * 11 10 9 14 14 C 1.81407 * 104.44686 * 261.47087 * 11 10 9 15 15 C 1.52997 * 109.46775 * 173.93165 * 14 11 10 16 16 C 1.50695 * 115.56607 * 40.56989 * 15 14 11 17 17 H 1.07999 * 120.00323 * 266.61782 * 16 15 14 18 18 C 1.37884 * 120.00243 * 86.61053 * 16 15 14 19 19 N 1.31518 * 119.99420 * 3.27766 * 18 16 15 20 20 Si 1.86799 * 120.00214 * 183.27887 * 18 16 15 21 21 H 1.48500 * 109.47219 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46742 * 119.99995 * 20 18 16 23 23 H 1.48496 * 109.47134 * 239.99867 * 20 18 16 24 24 C 1.52998 * 117.49768 * 186.26048 * 15 14 11 25 25 C 1.52995 * 60.00305 * 107.48758 * 24 15 14 26 26 H 1.09004 * 109.46956 * 180.35516 * 1 2 3 27 27 H 1.09001 * 109.46965 * 300.35012 * 1 2 3 28 28 H 1.09000 * 109.47425 * 60.35836 * 1 2 3 29 29 H 0.97000 * 120.00011 * 4.78756 * 4 3 2 30 30 H 0.96996 * 119.99783 * 184.78580 * 4 3 2 31 31 H 1.09002 * 109.56198 * 305.39472 * 6 2 1 32 32 H 1.09000 * 109.36118 * 185.33519 * 6 2 1 33 33 H 1.09006 * 109.45708 * 301.22402 * 7 6 2 34 34 H 1.08990 * 109.45029 * 181.25086 * 7 6 2 35 35 H 1.09007 * 109.49768 * 178.68787 * 8 7 6 36 36 H 1.08993 * 109.49909 * 58.58437 * 8 7 6 37 37 H 1.08998 * 109.58424 * 294.84785 * 9 8 7 38 38 H 1.09006 * 109.69974 * 174.49661 * 9 8 7 39 39 H 1.08993 * 109.47046 * 53.92816 * 14 11 10 40 40 H 1.08998 * 109.47134 * 293.92825 * 14 11 10 41 41 H 0.96998 * 119.99159 * 185.00391 * 19 18 16 42 42 H 1.09001 * 117.49960 * 0.02562 * 24 15 14 43 43 H 1.08998 * 117.49998 * 214.97726 * 24 15 14 44 44 H 1.09006 * 117.50101 * 107.48599 * 25 24 15 45 45 H 1.09007 * 117.50411 * 252.49183 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0380 1.4189 0.0000 4 7 1.3045 2.3973 -0.5667 5 8 3.1068 1.6803 0.5099 6 6 2.0383 -0.7238 1.2455 7 6 1.6411 -2.2000 1.1727 8 6 2.2846 -2.8430 -0.0581 9 6 1.7741 -2.1420 -1.3211 10 7 2.0226 -0.6995 -1.1946 11 16 2.8480 0.1211 -2.3725 12 8 2.2374 1.4039 -2.3994 13 8 2.7948 -0.7395 -3.5019 14 6 4.5442 0.2366 -1.7397 15 6 5.4482 0.8475 -2.8123 16 6 4.8515 1.9910 -3.5915 17 1 4.3473 1.8018 -4.5276 18 6 4.9492 3.2791 -3.1093 19 7 5.6185 3.5178 -2.0026 20 14 4.1309 4.6849 -4.0278 21 1 3.4450 4.1554 -5.2338 22 1 3.1369 5.3426 -3.1421 23 1 5.1600 5.6741 -4.4373 24 6 6.9505 0.8950 -2.5268 25 6 6.3983 -0.0939 -3.5553 26 1 -0.3633 -1.0277 0.0064 27 1 -0.3633 0.5193 0.8868 28 1 -0.3634 0.5082 -0.8932 29 1 0.4196 2.2016 -0.9126 30 1 1.6614 3.2971 -0.6287 31 1 1.5987 -0.2723 2.1349 32 1 3.1241 -0.6412 1.2936 33 1 0.5565 -2.2810 1.0996 34 1 1.9839 -2.7128 2.0712 35 1 2.0203 -3.8998 -0.0966 36 1 3.3680 -2.7403 0.0023 37 1 0.7045 -2.3203 -1.4310 38 1 2.3005 -2.5283 -2.1939 39 1 4.9053 -0.7595 -1.4842 40 1 4.5581 0.8672 -0.8507 41 1 5.6267 4.4109 -1.6240 42 1 7.2949 0.4907 -1.5749 43 1 7.5073 1.7534 -2.9025 44 1 6.5917 0.1139 -4.6077 45 1 6.3796 -1.1485 -3.2801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451390657.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:25 Heat of formation + Delta-G solvation = -69.651359 kcal Electronic energy + Delta-G solvation = -29943.710880 eV Core-core repulsion = 26089.729656 eV Total energy + Delta-G solvation = -3853.981224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.27263 -37.68171 -36.61469 -36.06962 -34.98306 -33.50116 -32.27541 -31.94115 -31.88904 -28.12601 -27.51553 -25.37431 -24.18954 -23.75182 -21.07412 -20.63573 -20.10966 -19.13220 -18.02372 -17.54187 -16.44041 -16.37632 -16.09034 -15.65280 -15.04747 -14.58393 -14.56421 -14.32952 -14.26930 -13.73092 -13.57174 -13.45691 -13.20519 -12.97913 -12.82102 -12.41130 -12.14054 -11.95869 -11.75267 -11.53498 -11.15991 -11.12449 -11.08845 -10.92308 -10.91183 -10.83956 -10.74702 -10.45403 -10.35080 -10.24986 -10.00167 -9.56620 -9.40583 -9.00671 -8.79085 -8.75373 -8.39311 -7.96023 -6.04820 -4.20910 1.13067 2.70734 3.33269 3.39958 3.48018 3.61767 3.83657 4.44846 4.60399 4.68768 4.76105 4.85176 4.92968 5.11905 5.14619 5.24120 5.24783 5.26219 5.33215 5.50595 5.54255 5.65890 5.72804 5.78068 5.87138 5.91334 5.97733 6.06563 6.11228 6.13880 6.31774 6.39737 6.44120 6.52115 6.75766 6.80907 6.86125 7.11649 7.29374 7.39117 7.55079 7.85207 7.86614 8.28237 8.72564 8.86381 9.54679 11.01674 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.006623 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.951992 B = 4226.619393 C = 4897.451098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 C 0.503 3.497 4 N -0.802 5.802 5 O -0.524 6.524 6 C -0.117 4.117 7 C -0.115 4.115 8 C -0.138 4.138 9 C 0.119 3.881 10 N -0.999 5.999 11 S 2.608 3.392 12 O -0.934 6.934 13 O -0.974 6.974 14 C -0.561 4.561 15 C 0.050 3.950 16 C -0.539 4.539 17 H 0.065 0.935 18 C 0.097 3.903 19 N -0.855 5.855 20 Si 0.891 3.109 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.286 1.286 24 C -0.135 4.135 25 C -0.210 4.210 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.396 0.604 30 H 0.405 0.595 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.145 0.855 41 H 0.262 0.738 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.946 -9.694 7.603 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.077 3.923 3 C 0.284 3.716 4 N -0.364 5.364 5 O -0.400 6.400 6 C -0.156 4.156 7 C -0.152 4.152 8 C -0.177 4.177 9 C -0.006 4.006 10 N -0.836 5.836 11 S 2.709 3.291 12 O -0.923 6.923 13 O -0.965 6.965 14 C -0.694 4.694 15 C 0.048 3.952 16 C -0.577 4.577 17 H 0.083 0.917 18 C -0.111 4.111 19 N -0.489 5.489 20 Si 0.718 3.282 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.212 1.212 24 C -0.174 4.174 25 C -0.247 4.247 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.225 0.775 30 H 0.237 0.763 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.162 0.838 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.556 -9.239 7.243 15.788 hybrid contribution -0.162 0.864 -0.090 0.883 sum -10.718 -8.376 7.153 15.369 Atomic orbital electron populations 1.22264 0.93724 1.03528 1.02673 1.20210 0.95031 0.89673 0.87422 1.20197 0.85060 0.87213 0.79159 1.43453 1.20397 1.12488 1.60033 1.90799 1.21076 1.83199 1.44924 1.21725 1.03160 0.95155 0.95549 1.21508 1.00639 0.95105 0.97986 1.21960 1.01399 0.99317 0.95028 1.21388 1.01400 0.79186 0.98626 1.58405 1.72043 1.17789 1.35366 1.05164 0.77308 0.73532 0.73134 1.93580 1.74261 1.39685 1.84758 1.93450 1.87496 1.67771 1.47769 1.30131 1.20520 1.06876 1.11921 1.18179 0.88613 0.95013 0.93401 1.20553 1.39185 0.90288 1.07666 0.91662 1.24882 0.93001 0.98432 0.94745 1.70027 1.37718 1.21785 1.19363 0.86549 0.79273 0.81953 0.80411 1.19432 1.20430 1.21227 1.22466 0.98692 0.99370 0.96881 1.23151 1.09424 0.94378 0.97777 0.90824 0.91139 0.91418 0.77476 0.76341 0.90836 0.89847 0.91613 0.91602 0.90867 0.91273 0.91419 0.88627 0.89089 0.83756 0.92775 0.91844 0.89319 0.89859 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 7.68 37.16 0.29 -1.44 16 2 C 0.17 2.40 0.95 -132.86 -0.13 2.28 16 3 C 0.50 8.96 4.43 -10.98 -0.05 8.91 16 4 N -0.80 -12.97 6.40 31.22 0.20 -12.77 16 5 O -0.52 -11.35 14.66 5.56 0.08 -11.27 16 6 C -0.12 -1.46 4.53 -26.83 -0.12 -1.58 16 7 C -0.11 -1.11 5.68 -26.69 -0.15 -1.26 16 8 C -0.14 -1.44 6.08 -26.61 -0.16 -1.60 16 9 C 0.12 1.53 5.96 -3.71 -0.02 1.51 16 10 N -1.00 -15.94 2.93 -101.11 -0.30 -16.24 16 11 S 2.61 55.84 4.05 -107.50 -0.44 55.40 16 12 O -0.93 -21.32 12.54 -57.54 -0.72 -22.04 16 13 O -0.97 -22.75 16.46 -57.54 -0.95 -23.70 16 14 C -0.56 -12.92 6.15 37.16 0.23 -12.69 16 15 C 0.05 1.29 1.74 -155.66 -0.27 1.02 16 16 C -0.54 -15.21 6.93 -34.44 -0.24 -15.45 16 17 H 0.07 1.89 7.82 -52.49 -0.41 1.48 16 18 C 0.10 2.72 5.42 -17.82 -0.10 2.62 16 19 N -0.86 -24.46 12.59 55.43 0.70 -23.76 16 20 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 21 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 C -0.14 -3.31 9.11 -26.73 -0.24 -3.56 16 25 C -0.21 -4.86 9.88 -26.73 -0.26 -5.13 16 26 H 0.07 0.66 5.74 -51.93 -0.30 0.36 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.71 6.80 -51.93 -0.35 0.36 16 29 H 0.40 5.19 6.74 -40.82 -0.28 4.91 16 30 H 0.41 6.92 8.93 -40.82 -0.36 6.55 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.22 7.64 -51.93 -0.40 0.82 16 33 H 0.07 0.54 6.49 -51.93 -0.34 0.21 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.72 7.52 -51.93 -0.39 0.33 16 38 H 0.10 1.32 6.85 -51.93 -0.36 0.97 16 39 H 0.09 1.82 7.96 -51.93 -0.41 1.41 16 40 H 0.14 3.58 5.69 -51.93 -0.30 3.29 16 41 H 0.26 7.18 8.32 -40.82 -0.34 6.84 16 42 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 43 H 0.09 2.29 8.13 -51.93 -0.42 1.87 16 44 H 0.08 1.90 8.14 -51.93 -0.42 1.47 16 45 H 0.07 1.37 8.09 -51.92 -0.42 0.95 16 LS Contribution 354.72 15.07 5.35 5.35 Total: -1.00 -34.22 354.72 -9.15 -43.38 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -6.83 Total: 14.95 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: -1.23 Total: -26.36 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.60 Total: -52.76 kcal Atomic # 8 Polarization: -55.42 SS G_CDS: -1.59 Total: -57.00 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 55.84 SS G_CDS: -0.44 Total: 55.40 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.22 -9.15 -43.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451390657.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.273 kcal (2) G-P(sol) polarization free energy of solvation -34.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds