Wall clock time and date at job start Tue Mar 31 2020 05:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47080 * 2 1 4 4 C 1.50699 * 109.46671 * 239.99891 * 2 1 3 5 5 H 1.08007 * 119.99853 * 239.99815 * 4 2 1 6 6 C 1.37873 * 120.00359 * 60.00590 * 4 2 1 7 7 N 1.31522 * 119.99672 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00444 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47047 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47540 * 119.99559 * 8 6 4 11 11 H 1.48504 * 109.47104 * 239.99563 * 8 6 4 12 12 C 1.52997 * 109.46750 * 120.00201 * 2 1 3 13 13 S 1.81400 * 109.47323 * 299.99415 * 12 2 1 14 14 O 1.42099 * 110.54041 * 68.38094 * 13 12 2 15 15 O 1.42093 * 110.54555 * 291.63014 * 13 12 2 16 16 N 1.65600 * 104.44987 * 180.02562 * 13 12 2 17 17 C 1.46988 * 127.03463 * 270.02641 * 16 13 12 18 18 C 1.50763 * 106.56564 * 179.74974 * 17 16 13 19 19 O 1.21276 * 125.42921 * 180.28372 * 18 17 16 20 20 N 1.34304 * 109.14878 * 0.40531 * 18 17 16 21 21 C 1.46506 * 124.85533 * 179.85351 * 20 18 17 22 22 C 1.53002 * 109.47035 * 269.70039 * 21 20 18 23 23 C 1.52997 * 117.49712 * 243.62344 * 22 21 20 24 24 C 1.52995 * 117.49779 * 174.99882 * 22 21 20 25 25 C 1.46227 * 110.29280 * 359.58918 * 20 18 17 26 26 H 1.08996 * 109.46704 * 300.00015 * 1 2 3 27 27 H 1.09004 * 109.47050 * 59.99794 * 1 2 3 28 28 H 1.08997 * 109.47109 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47174 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47347 * 300.00024 * 3 2 1 31 31 H 1.08996 * 109.47364 * 60.00389 * 3 2 1 32 32 H 0.97006 * 119.99977 * 179.97438 * 7 6 4 33 33 H 1.09011 * 109.46758 * 180.02562 * 12 2 1 34 34 H 1.08996 * 109.47674 * 60.00394 * 12 2 1 35 35 H 1.08996 * 110.03805 * 299.26273 * 17 16 13 36 36 H 1.09005 * 110.03434 * 60.65209 * 17 16 13 37 37 H 1.09004 * 109.47073 * 29.69722 * 21 20 18 38 38 H 1.09000 * 109.47212 * 149.69804 * 21 20 18 39 39 H 1.09002 * 115.54576 * 29.32700 * 22 21 20 40 40 H 1.09001 * 117.50164 * 359.97438 * 23 22 21 41 41 H 1.08996 * 117.50012 * 145.01906 * 23 22 21 42 42 H 1.09003 * 117.49616 * 214.97325 * 24 22 21 43 43 H 1.09000 * 117.50299 * 359.97438 * 24 22 21 44 44 H 1.08997 * 109.75096 * 119.92108 * 25 20 18 45 45 H 1.08999 * 109.75122 * 240.60671 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1482 -2.2858 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8161 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1339 2.7304 14 8 0.0280 -0.0183 2.8544 15 8 2.0480 1.4099 2.8544 16 7 2.0541 -0.7401 3.9936 17 6 1.4272 -1.8854 4.6688 18 6 2.3880 -2.3301 5.7422 19 8 2.2112 -3.2571 6.5039 20 7 3.4698 -1.5345 5.7223 21 6 4.6177 -1.6592 6.6241 22 6 4.3817 -0.8047 7.8712 23 6 5.3396 0.3622 8.1195 24 6 5.4181 -0.8913 8.9933 25 6 3.3411 -0.5297 4.6677 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 0.7088 1.1614 -3.4844 33 1 3.1301 -0.7209 1.2495 34 1 1.6767 -1.7489 1.2492 35 1 0.4789 -1.5836 5.1132 36 1 1.2651 -2.6953 3.9575 37 1 4.7386 -2.7025 6.9161 38 1 5.5188 -1.3177 6.1147 39 1 3.3389 -0.6702 8.1584 40 1 6.1381 0.5209 7.3947 41 1 4.9270 1.2648 8.5701 42 1 5.0572 -0.8133 10.0188 43 1 6.2678 -1.5574 8.8434 44 1 3.3694 0.4685 5.1045 45 1 4.1549 -0.6414 3.9512 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451481908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:52 Heat of formation + Delta-G solvation = -58.740685 kcal Electronic energy + Delta-G solvation = -27329.893626 eV Core-core repulsion = 23476.385524 eV Total energy + Delta-G solvation = -3853.508102 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.77940 -37.77368 -37.00778 -36.76808 -36.38026 -35.50753 -33.73099 -31.74182 -28.79493 -27.85748 -26.75377 -25.80657 -25.30339 -24.10240 -22.72722 -21.56324 -20.13111 -19.63552 -18.98304 -17.74623 -16.81373 -16.67369 -16.04343 -15.86745 -15.72290 -15.40535 -15.16934 -14.75790 -14.65536 -14.28924 -13.80772 -13.29387 -13.22394 -13.13949 -13.01987 -12.93181 -12.60617 -12.24900 -12.18910 -12.00655 -11.86465 -11.65901 -11.22175 -11.15357 -11.03302 -10.86889 -10.81750 -10.46671 -10.38071 -10.35512 -10.20829 -10.16134 -9.84575 -9.74500 -9.49156 -8.90520 -8.71410 -8.47144 -6.10389 -4.22722 0.49416 2.24755 2.46790 2.83885 3.20977 3.29894 3.32112 3.43501 4.02009 4.15432 4.23840 4.31718 4.33178 4.53640 4.60923 4.82384 4.97045 5.05866 5.06054 5.15271 5.20456 5.23315 5.28598 5.32498 5.35238 5.45626 5.54630 5.62726 5.75838 5.82552 5.89110 6.25360 6.29226 6.60819 6.70000 6.76052 6.80065 6.94335 7.22767 7.41284 7.61375 7.81885 7.90371 8.01374 8.24678 8.76092 9.43341 10.90982 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020748 B = 0.003032 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.189645 B = 9231.589682 C = 9292.634325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.576 4.576 13 S 2.610 3.390 14 O -0.947 6.947 15 O -0.949 6.949 16 N -1.028 6.028 17 C 0.090 3.910 18 C 0.523 3.477 19 O -0.518 6.518 20 N -0.621 5.621 21 C 0.163 3.837 22 C -0.175 4.175 23 C -0.178 4.178 24 C -0.172 4.172 25 C 0.350 3.650 26 H 0.027 0.973 27 H 0.096 0.904 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.096 0.904 31 H 0.027 0.973 32 H 0.263 0.737 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.897 -2.747 16.987 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.079 3.921 3 C -0.222 4.222 4 C -0.542 4.542 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.711 4.711 13 S 2.710 3.290 14 O -0.937 6.937 15 O -0.940 6.940 16 N -0.865 5.865 17 C -0.038 4.038 18 C 0.310 3.690 19 O -0.394 6.394 20 N -0.357 5.357 21 C 0.042 3.958 22 C -0.195 4.195 23 C -0.215 4.215 24 C -0.210 4.210 25 C 0.138 3.862 26 H 0.046 0.954 27 H 0.115 0.885 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.115 0.885 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.125 0.875 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.102 0.898 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.199 -2.305 17.376 18.949 hybrid contribution 0.712 -0.904 -1.157 1.632 sum 7.912 -3.208 16.219 18.329 Atomic orbital electron populations 1.22296 0.96785 1.00791 1.02408 1.17973 0.92936 0.92268 0.88897 1.22288 0.99805 0.97705 1.02410 1.20957 1.31846 1.12162 0.89245 0.92169 1.24939 0.94828 0.94969 0.98979 1.69808 1.36206 1.22560 1.23498 0.86464 0.78670 0.79611 0.82813 1.19814 1.20903 1.20919 1.30565 1.11479 1.12988 1.16018 1.05646 0.74521 0.74455 0.74416 1.93566 1.28573 1.86234 1.85362 1.93557 1.78184 1.36811 1.85434 1.59376 1.29331 1.47240 1.50522 1.21569 0.97175 0.89817 0.95281 1.20664 0.82514 0.81589 0.84269 1.90767 1.77327 1.28840 1.42424 1.48329 1.20190 1.32694 1.34479 1.20961 0.86587 1.00782 0.87497 1.22785 0.97373 1.01781 0.97516 1.23098 1.02067 0.92879 1.03409 1.22935 1.01015 1.01060 0.95966 1.21049 0.86008 0.92043 0.87057 0.95416 0.88501 0.94306 0.94343 0.88516 0.95412 0.92708 0.86114 0.86070 0.87004 0.87450 0.88924 0.89475 0.87451 0.88391 0.88665 0.88628 0.88497 0.89756 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 7.78 37.16 0.29 -3.59 16 2 C 0.08 1.88 0.52 -155.66 -0.08 1.80 16 3 C -0.16 -3.83 7.77 37.15 0.29 -3.54 16 4 C -0.50 -12.68 8.01 -34.44 -0.28 -12.95 16 5 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 6 C 0.06 1.67 5.15 -17.82 -0.09 1.58 16 7 N -0.88 -23.37 9.35 55.43 0.52 -22.85 16 8 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 C -0.58 -10.37 5.12 37.16 0.19 -10.18 16 13 S 2.61 44.63 4.73 -107.50 -0.51 44.12 16 14 O -0.95 -18.49 15.30 -57.54 -0.88 -19.37 16 15 O -0.95 -18.09 15.29 -57.54 -0.88 -18.97 16 16 N -1.03 -13.51 3.67 -118.64 -0.44 -13.95 16 17 C 0.09 1.09 7.07 -4.90 -0.03 1.05 16 18 C 0.52 6.63 8.13 -11.17 -0.09 6.54 16 19 O -0.52 -7.99 17.67 5.56 0.10 -7.89 16 20 N -0.62 -6.57 2.93 -177.57 -0.52 -7.09 16 21 C 0.16 1.34 6.27 -4.04 -0.03 1.32 16 22 C -0.18 -1.42 6.01 -90.62 -0.54 -1.97 16 23 C -0.18 -1.20 10.18 -26.73 -0.27 -1.47 16 24 C -0.17 -1.13 10.25 -26.73 -0.27 -1.40 16 25 C 0.35 3.79 7.60 -63.72 -0.48 3.31 16 26 H 0.03 0.61 5.46 -51.93 -0.28 0.33 16 27 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 31 H 0.03 0.61 5.46 -51.93 -0.28 0.32 16 32 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 33 H 0.12 1.92 8.14 -51.92 -0.42 1.50 16 34 H 0.12 1.97 8.14 -51.93 -0.42 1.55 16 35 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.09 0.79 7.97 -51.93 -0.41 0.38 16 38 H 0.09 0.53 7.88 -51.93 -0.41 0.12 16 39 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.10 0.57 8.03 -51.93 -0.42 0.16 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -31.58 370.35 -10.51 -42.08 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.05 Total: 2.77 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -1.41 Total: -19.50 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: -0.44 Total: -43.88 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -1.66 Total: -46.22 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 44.63 SS G_CDS: -0.51 Total: 44.12 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.58 -10.51 -42.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451481908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.659 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds