Wall clock time and date at job start Tue Mar 31 2020 05:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47080 * 2 1 4 4 C 1.50699 * 109.46671 * 239.99891 * 2 1 3 5 5 H 1.08007 * 119.99853 * 239.99815 * 4 2 1 6 6 C 1.37873 * 120.00359 * 60.00590 * 4 2 1 7 7 N 1.31522 * 119.99672 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00444 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47047 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47540 * 119.99559 * 8 6 4 11 11 H 1.48504 * 109.47104 * 239.99563 * 8 6 4 12 12 C 1.52997 * 109.46750 * 120.00201 * 2 1 3 13 13 S 1.81400 * 109.47323 * 299.99415 * 12 2 1 14 14 O 1.42099 * 110.54041 * 68.38094 * 13 12 2 15 15 O 1.42093 * 110.54555 * 291.63014 * 13 12 2 16 16 N 1.65600 * 104.44987 * 180.02562 * 13 12 2 17 17 C 1.46988 * 127.03463 * 270.02641 * 16 13 12 18 18 C 1.50763 * 106.56564 * 179.74974 * 17 16 13 19 19 O 1.21276 * 125.42921 * 180.28372 * 18 17 16 20 20 N 1.34304 * 109.14878 * 0.40531 * 18 17 16 21 21 C 1.46506 * 124.85533 * 179.85351 * 20 18 17 22 22 C 1.53002 * 109.47035 * 269.70039 * 21 20 18 23 23 C 1.52997 * 117.49712 * 243.62344 * 22 21 20 24 24 C 1.52995 * 117.49779 * 174.99882 * 22 21 20 25 25 C 1.46227 * 110.29280 * 359.58918 * 20 18 17 26 26 H 1.08996 * 109.46704 * 300.00015 * 1 2 3 27 27 H 1.09004 * 109.47050 * 59.99794 * 1 2 3 28 28 H 1.08997 * 109.47109 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47174 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47347 * 300.00024 * 3 2 1 31 31 H 1.08996 * 109.47364 * 60.00389 * 3 2 1 32 32 H 0.97006 * 119.99977 * 179.97438 * 7 6 4 33 33 H 1.09011 * 109.46758 * 180.02562 * 12 2 1 34 34 H 1.08996 * 109.47674 * 60.00394 * 12 2 1 35 35 H 1.08996 * 110.03805 * 299.26273 * 17 16 13 36 36 H 1.09005 * 110.03434 * 60.65209 * 17 16 13 37 37 H 1.09004 * 109.47073 * 29.69722 * 21 20 18 38 38 H 1.09000 * 109.47212 * 149.69804 * 21 20 18 39 39 H 1.09002 * 115.54576 * 29.32700 * 22 21 20 40 40 H 1.09001 * 117.50164 * 359.97438 * 23 22 21 41 41 H 1.08996 * 117.50012 * 145.01906 * 23 22 21 42 42 H 1.09003 * 117.49616 * 214.97325 * 24 22 21 43 43 H 1.09000 * 117.50299 * 359.97438 * 24 22 21 44 44 H 1.08997 * 109.75096 * 119.92108 * 25 20 18 45 45 H 1.08999 * 109.75122 * 240.60671 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1482 -2.2858 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8161 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1339 2.7304 14 8 0.0280 -0.0183 2.8544 15 8 2.0480 1.4099 2.8544 16 7 2.0541 -0.7401 3.9936 17 6 1.4272 -1.8854 4.6688 18 6 2.3880 -2.3301 5.7422 19 8 2.2112 -3.2571 6.5039 20 7 3.4698 -1.5345 5.7223 21 6 4.6177 -1.6592 6.6241 22 6 4.3817 -0.8047 7.8712 23 6 5.3396 0.3622 8.1195 24 6 5.4181 -0.8913 8.9933 25 6 3.3411 -0.5297 4.6677 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 0.7088 1.1614 -3.4844 33 1 3.1301 -0.7209 1.2495 34 1 1.6767 -1.7489 1.2492 35 1 0.4789 -1.5836 5.1132 36 1 1.2651 -2.6953 3.9575 37 1 4.7386 -2.7025 6.9161 38 1 5.5188 -1.3177 6.1147 39 1 3.3389 -0.6702 8.1584 40 1 6.1381 0.5209 7.3947 41 1 4.9270 1.2648 8.5701 42 1 5.0572 -0.8133 10.0188 43 1 6.2678 -1.5574 8.8434 44 1 3.3694 0.4685 5.1045 45 1 4.1549 -0.6414 3.9512 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451481908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:51 Heat of formation + Delta-G solvation = -78.305108 kcal Electronic energy + Delta-G solvation = -27330.742003 eV Core-core repulsion = 23476.385524 eV Total energy + Delta-G solvation = -3854.356479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70564 -38.42794 -38.22698 -38.15971 -37.94110 -36.98531 -34.60940 -33.61913 -29.76704 -28.67259 -28.24139 -27.66586 -27.23490 -25.03954 -23.23124 -22.28600 -21.33473 -20.95053 -20.25721 -19.01759 -17.98450 -17.77633 -17.44929 -17.02795 -16.81877 -16.75002 -16.56591 -16.02259 -15.41078 -15.20879 -14.97626 -14.73841 -14.67690 -14.41276 -14.06064 -13.91764 -13.83135 -13.71306 -13.64887 -13.12973 -12.97724 -12.91406 -12.75486 -12.66870 -12.50165 -12.33812 -12.19006 -12.12780 -11.97237 -11.54804 -11.53551 -11.39481 -11.11978 -10.91004 -10.75819 -10.48027 -10.40556 -9.71514 -8.02199 -6.20326 -0.86314 1.28392 1.44154 1.47288 1.48267 1.56768 1.79432 2.45302 2.80665 2.87781 3.00487 3.12049 3.21317 3.74326 3.89798 3.92604 4.02851 4.06642 4.17081 4.17743 4.27753 4.31171 4.34602 4.44391 4.60192 4.61897 4.70229 4.79995 4.82529 4.88312 4.88965 5.00405 5.04541 5.11998 5.18529 5.27798 5.41418 5.48301 5.53611 5.67315 5.86373 6.01044 6.13709 6.35628 6.85033 6.88301 7.48355 8.97636 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020748 B = 0.003032 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.189645 B = 9231.589682 C = 9292.634325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.069 3.931 3 C -0.161 4.161 4 C -0.515 4.515 5 H 0.065 0.935 6 C 0.019 3.981 7 N -0.907 5.907 8 Si 0.952 3.048 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.284 1.284 12 C -0.581 4.581 13 S 2.638 3.362 14 O -0.974 6.974 15 O -0.969 6.969 16 N -1.025 6.025 17 C 0.084 3.916 18 C 0.523 3.477 19 O -0.552 6.552 20 N -0.613 5.613 21 C 0.160 3.840 22 C -0.191 4.191 23 C -0.172 4.172 24 C -0.166 4.166 25 C 0.340 3.660 26 H 0.034 0.966 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.261 0.739 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.091 0.909 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.848 -3.538 17.680 20.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.067 3.933 3 C -0.219 4.219 4 C -0.554 4.554 5 H 0.083 0.917 6 C -0.181 4.181 7 N -0.546 5.546 8 Si 0.778 3.222 9 H -0.189 1.189 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.714 4.714 13 S 2.737 3.263 14 O -0.965 6.965 15 O -0.960 6.960 16 N -0.863 5.863 17 C -0.044 4.044 18 C 0.309 3.691 19 O -0.430 6.430 20 N -0.347 5.347 21 C 0.039 3.961 22 C -0.210 4.210 23 C -0.208 4.208 24 C -0.203 4.203 25 C 0.130 3.870 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.132 0.868 36 H 0.143 0.857 37 H 0.107 0.893 38 H 0.134 0.866 39 H 0.103 0.897 40 H 0.130 0.870 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.129 0.871 44 H 0.109 0.891 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.177 -3.077 18.064 20.494 hybrid contribution 0.124 -0.638 -1.282 1.437 sum 9.301 -3.715 16.782 19.543 Atomic orbital electron populations 1.22239 0.97760 1.00633 1.01428 1.17944 0.92343 0.92320 0.90717 1.22218 1.00126 0.98112 1.01429 1.21320 1.31533 1.12262 0.90264 0.91721 1.25642 0.95221 0.95639 1.01596 1.69949 1.37194 1.23687 1.23758 0.85597 0.77986 0.78769 0.79798 1.18924 1.21228 1.21044 1.30492 1.13059 1.13476 1.14387 1.04514 0.73598 0.73883 0.74330 1.93528 1.30460 1.86613 1.85859 1.93525 1.78416 1.38211 1.85851 1.58848 1.30515 1.47366 1.49592 1.21736 0.97127 0.89876 0.95633 1.20675 0.83029 0.81394 0.83952 1.90751 1.78076 1.30428 1.43718 1.48418 1.20158 1.31766 1.34363 1.21189 0.86656 1.00802 0.87414 1.22679 0.96678 1.03288 0.98393 1.23175 1.01627 0.92536 1.03498 1.23028 1.00591 1.01112 0.95580 1.21397 0.85541 0.92409 0.87690 0.94765 0.91103 0.93989 0.93654 0.91180 0.94708 0.92969 0.83759 0.84246 0.86831 0.85670 0.89311 0.86631 0.89715 0.86976 0.88872 0.88598 0.87100 0.89092 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.66 7.78 71.98 0.56 -7.10 16 2 C 0.07 3.11 0.52 -52.93 -0.03 3.08 16 3 C -0.16 -7.44 7.77 71.98 0.56 -6.88 16 4 C -0.51 -25.42 8.01 25.60 0.21 -25.21 16 5 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 6 C 0.02 0.95 5.15 84.65 0.44 1.38 16 7 N -0.91 -48.63 9.35 21.45 0.20 -48.43 16 8 Si 0.95 40.82 29.54 68.60 2.03 42.85 16 9 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 10 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 C -0.58 -19.56 5.12 71.98 0.37 -19.19 16 13 S 2.64 85.42 4.73 -56.49 -0.27 85.15 16 14 O -0.97 -36.97 15.30 -127.65 -1.95 -38.93 16 15 O -0.97 -35.28 15.29 -127.65 -1.95 -37.23 16 16 N -1.03 -24.56 3.67 -529.26 -1.94 -26.51 16 17 C 0.08 1.89 7.07 85.56 0.60 2.50 16 18 C 0.52 12.54 8.13 87.75 0.71 13.26 16 19 O -0.55 -16.68 17.67 -3.02 -0.05 -16.73 16 20 N -0.61 -11.62 2.93 -834.37 -2.44 -14.06 16 21 C 0.16 2.26 6.27 86.38 0.54 2.80 16 22 C -0.19 -2.81 6.01 -10.80 -0.06 -2.87 16 23 C -0.17 -1.93 10.18 30.59 0.31 -1.62 16 24 C -0.17 -1.84 10.25 30.59 0.31 -1.53 16 25 C 0.34 6.39 7.60 170.95 1.30 7.69 16 26 H 0.03 1.52 5.46 -2.39 -0.01 1.51 16 27 H 0.07 3.69 6.07 -2.38 -0.01 3.68 16 28 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 3.61 6.07 -2.38 -0.01 3.59 16 31 H 0.03 1.51 5.46 -2.39 -0.01 1.50 16 32 H 0.26 13.42 8.31 -92.70 -0.77 12.65 16 33 H 0.14 4.12 8.14 -2.38 -0.02 4.10 16 34 H 0.14 4.15 8.14 -2.39 -0.02 4.13 16 35 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.13 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.09 1.35 7.97 -2.38 -0.02 1.33 16 38 H 0.12 0.97 7.88 -2.39 -0.02 0.95 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 40 H 0.11 0.95 8.03 -2.39 -0.02 0.93 16 41 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.11 0.92 8.14 -2.39 -0.02 0.91 16 44 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -67.51 370.35 0.42 -67.09 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.98 Total: 20.49 kcal Atomic # 6 Polarization: -39.51 SS G_CDS: 5.82 Total: -33.69 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -4.18 Total: -88.99 kcal Atomic # 8 Polarization: -88.93 SS G_CDS: -3.96 Total: -92.89 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Atomic # 16 Polarization: 85.42 SS G_CDS: -0.27 Total: 85.15 kcal Total: -67.51 0.42 -67.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451481908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.215 kcal (2) G-P(sol) polarization free energy of solvation -67.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds