Wall clock time and date at job start Tue Mar 31 2020 05:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47093 * 80.75633 * 3 2 1 5 5 C 1.37087 * 120.00196 * 264.38284 * 4 3 2 6 6 H 1.08005 * 120.00424 * 196.17956 * 5 4 3 7 7 C 1.38955 * 119.99665 * 16.17951 * 5 4 3 8 8 N 1.31408 * 120.00395 * 20.85253 * 7 5 4 9 9 Si 1.86806 * 119.99866 * 200.84843 * 7 5 4 10 10 H 1.48498 * 109.47048 * 84.94431 * 9 7 5 11 11 H 1.48503 * 109.46767 * 204.94631 * 9 7 5 12 12 H 1.48501 * 109.47101 * 324.94096 * 9 7 5 13 13 C 1.34778 * 119.99815 * 84.38708 * 4 3 2 14 14 O 1.21292 * 119.99696 * 179.97438 * 13 4 3 15 15 C 1.50704 * 120.00391 * 0.02562 * 13 4 3 16 16 O 1.42897 * 109.47178 * 180.02562 * 15 13 4 17 17 C 1.42907 * 113.99817 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.47173 * 179.97438 * 17 16 15 19 19 N 1.46507 * 109.46465 * 65.00202 * 18 17 16 20 20 C 1.34774 * 119.99435 * 180.02562 * 19 18 17 21 21 O 1.21558 * 120.00222 * 359.97438 * 20 19 18 22 22 C 1.47845 * 120.00048 * 179.97438 * 20 19 18 23 23 C 1.39574 * 120.14706 * 179.97438 * 22 20 19 24 24 C 1.37960 * 119.85377 * 179.97438 * 23 22 20 25 25 C 1.38359 * 120.14460 * 359.97438 * 24 23 22 26 26 C 1.38360 * 120.29451 * 0.04220 * 25 24 23 27 27 C 1.37962 * 120.14142 * 359.95658 * 26 25 24 28 28 H 4.40636 * 5.51474 * 180.02562 * 4 1 2 29 29 H 1.08993 * 109.47272 * 320.75235 * 3 2 1 30 30 H 1.09002 * 109.46417 * 200.75518 * 3 2 1 31 31 H 0.96994 * 120.00640 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.46973 * 59.99601 * 15 13 4 33 33 H 1.09001 * 109.46586 * 300.00375 * 15 13 4 34 34 H 1.09002 * 109.46803 * 59.99846 * 17 16 15 35 35 H 1.08995 * 109.46896 * 300.00227 * 17 16 15 36 36 H 1.08994 * 109.47037 * 305.00667 * 18 17 16 37 37 H 1.08993 * 109.47145 * 184.99638 * 18 17 16 38 38 H 0.96996 * 120.00361 * 359.97438 * 19 18 17 39 39 H 1.08001 * 120.07597 * 359.69486 * 23 22 20 40 40 H 1.07998 * 119.92614 * 179.97438 * 24 23 22 41 41 H 1.07998 * 119.85686 * 180.02562 * 25 24 23 42 42 H 1.07995 * 119.92888 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.07145 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.2210 -1.3633 5 6 3.4730 -1.4846 -1.7731 6 1 4.0686 -1.6221 -2.6635 7 6 3.0499 -2.5885 -1.0430 8 7 2.0219 -2.4846 -0.2310 9 14 3.9424 -4.2205 -1.2157 10 1 5.1138 -4.2430 -0.3033 11 1 3.0192 -5.3291 -0.8636 12 1 4.4034 -4.3866 -2.6175 13 6 3.2509 0.8174 -2.2145 14 8 3.6557 0.6340 -3.3431 15 6 2.8793 2.2067 -1.7638 16 8 3.0876 3.1272 -2.8368 17 6 2.7631 4.4807 -2.5126 18 6 3.0239 5.3727 -3.7280 19 7 2.1083 5.0031 -4.8103 20 6 2.1564 5.6587 -5.9869 21 8 2.9591 6.5569 -6.1499 22 6 1.2329 5.2855 -7.0794 23 6 1.2797 5.9627 -8.2990 24 6 0.4154 5.6090 -9.3145 25 6 -0.4959 4.5852 -9.1263 26 6 -0.5478 3.9100 -7.9197 27 6 0.3109 4.2537 -6.8960 28 1 -1.0500 0.0002 -0.0001 29 1 3.0097 -0.7950 0.6501 30 1 3.0088 0.9618 0.3642 31 1 1.7263 -3.2552 0.2784 32 1 3.5004 2.4914 -0.9145 33 1 1.8302 2.2244 -1.4688 34 1 3.3818 4.8130 -1.6790 35 1 1.7116 4.5451 -2.2330 36 1 4.0530 5.2404 -4.0616 37 1 2.8615 6.4153 -3.4549 38 1 1.4680 4.2862 -4.6804 39 1 1.9878 6.7648 -8.4458 40 1 0.4504 6.1326 -10.2585 41 1 -1.1700 4.3119 -9.9246 42 1 -1.2618 3.1120 -7.7791 43 1 0.2691 3.7262 -5.9546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490962300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:30 Heat of formation + Delta-G solvation = -14.433564 kcal Electronic energy + Delta-G solvation = -26867.893626 eV Core-core repulsion = 22880.862874 eV Total energy + Delta-G solvation = -3987.030752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.26291 -38.96090 -38.39695 -37.34387 -35.21396 -34.67702 -32.23089 -31.73186 -31.30251 -31.12887 -29.54490 -27.47841 -26.33874 -24.35396 -24.05083 -22.86271 -22.14233 -20.57293 -19.40706 -18.28030 -17.99099 -16.88571 -16.66836 -16.58383 -16.16303 -15.86182 -15.58693 -15.07371 -15.03014 -14.71415 -14.65558 -14.11017 -14.01962 -13.81036 -13.52555 -13.28944 -13.03944 -12.68718 -12.44936 -12.39818 -12.08201 -11.87148 -11.71172 -11.55655 -11.31723 -11.18667 -11.04135 -10.54002 -10.37070 -10.03825 -9.56401 -9.45707 -9.31755 -9.29693 -9.20480 -9.02177 -8.97525 -8.43501 -7.94828 -6.39430 -3.91710 0.67773 1.15590 2.77616 3.08268 3.12219 3.22221 3.25205 3.46479 3.69293 3.72801 3.86651 3.94505 4.16800 4.54334 4.61171 4.72850 4.80537 4.91418 4.96689 5.06179 5.08804 5.16029 5.27137 5.31755 5.35023 5.51172 5.53699 5.59221 5.63223 5.76230 5.80286 5.83961 6.10868 6.17729 6.19329 6.21966 6.33310 6.66084 6.68284 6.93342 7.22904 7.43255 7.51253 7.98249 8.13164 8.36947 8.69773 9.07404 9.27445 9.82616 10.61525 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013994 B = 0.002534 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.416160 B =11048.420951 C =11737.752671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.116 4.116 3 C 0.229 3.771 4 N -0.439 5.439 5 C -0.313 4.313 6 H 0.106 0.894 7 C 0.031 3.969 8 N -0.865 5.865 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.451 3.549 14 O -0.562 6.562 15 C 0.053 3.947 16 O -0.359 6.359 17 C 0.044 3.956 18 C 0.125 3.875 19 N -0.716 5.716 20 C 0.559 3.441 21 O -0.544 6.544 22 C -0.134 4.134 23 C -0.062 4.062 24 C -0.131 4.131 25 C -0.096 4.096 26 C -0.127 4.127 27 C -0.082 4.082 28 H 0.200 0.800 29 H 0.116 0.884 30 H 0.060 0.940 31 H 0.269 0.731 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.406 0.594 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.406 14.248 -5.242 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.117 4.117 3 C 0.105 3.895 4 N -0.160 5.160 5 C -0.440 4.440 6 H 0.124 0.876 7 C -0.173 4.173 8 N -0.503 5.503 9 Si 0.750 3.250 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.239 3.761 14 O -0.444 6.444 15 C -0.027 4.027 16 O -0.277 6.277 17 C -0.034 4.034 18 C 0.002 3.998 19 N -0.368 5.368 20 C 0.346 3.654 21 O -0.423 6.423 22 C -0.137 4.137 23 C -0.081 4.081 24 C -0.149 4.149 25 C -0.115 4.115 26 C -0.145 4.145 27 C -0.101 4.101 28 H 0.217 0.783 29 H 0.133 0.867 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.242 0.758 39 H 0.153 0.847 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.605 14.593 -5.945 16.724 hybrid contribution -0.517 -1.361 0.559 1.560 sum -6.123 13.231 -5.386 15.542 Atomic orbital electron populations 1.24301 0.95392 1.06280 1.01830 1.23210 0.94373 0.95503 0.98640 1.18340 0.84285 1.00290 0.86566 1.43651 1.56454 1.06833 1.09053 1.19686 1.31138 0.80458 1.12711 0.87648 1.25283 0.95224 0.99564 0.97217 1.70066 1.20963 1.31624 1.27661 0.85978 0.79091 0.80797 0.79099 1.20219 1.21095 1.19408 1.19665 0.85174 0.85330 0.85968 1.90563 1.49661 1.84810 1.19383 1.22309 1.00530 0.90180 0.89706 1.88059 1.87718 1.15174 1.36733 1.22788 1.00076 0.83707 0.96820 1.21401 0.95050 0.97534 0.85850 1.45842 1.39182 1.38260 1.13529 1.18267 0.83195 0.81764 0.82169 1.90753 1.38925 1.30969 1.81662 1.19973 0.98833 0.99437 0.95424 1.21281 0.97321 0.98074 0.91378 1.21157 0.96291 0.98258 0.99207 1.21389 0.97751 0.95077 0.97257 1.21161 0.99605 1.00325 0.93365 1.21417 0.93981 0.95194 0.99529 0.78317 0.86674 0.92204 0.92054 0.91763 0.91435 0.91465 0.92667 0.90183 0.89851 0.75801 0.84708 0.85385 0.85605 0.85219 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.04 19.25 29.55 0.57 -4.47 16 2 C -0.12 -2.44 10.95 -37.12 -0.41 -2.85 16 3 C 0.23 4.79 4.91 -6.83 -0.03 4.75 16 4 N -0.44 -10.76 2.60 -117.94 -0.31 -11.07 16 5 C -0.31 -8.42 9.35 -14.94 -0.14 -8.56 16 6 H 0.11 3.02 7.36 -52.48 -0.39 2.63 16 7 C 0.03 0.79 4.90 -17.47 -0.09 0.70 16 8 N -0.86 -21.95 9.39 55.50 0.52 -21.42 16 9 Si 0.92 20.07 29.60 -169.99 -5.03 15.04 16 10 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 C 0.45 10.83 7.64 -10.98 -0.08 10.74 16 14 O -0.56 -15.83 16.14 -14.36 -0.23 -16.06 16 15 C 0.05 0.94 5.02 36.01 0.18 1.12 16 16 O -0.36 -6.24 9.82 -55.14 -0.54 -6.78 16 17 C 0.04 0.52 6.07 37.16 0.23 0.74 16 18 C 0.13 1.52 6.06 -4.04 -0.02 1.49 16 19 N -0.72 -9.26 5.45 -61.25 -0.33 -9.60 16 20 C 0.56 8.00 7.77 -12.33 -0.10 7.91 16 21 O -0.54 -9.28 16.35 5.31 0.09 -9.19 16 22 C -0.13 -1.67 5.87 -104.97 -0.62 -2.28 16 23 C -0.06 -0.69 9.60 -39.19 -0.38 -1.07 16 24 C -0.13 -1.18 10.03 -39.64 -0.40 -1.58 16 25 C -0.10 -0.83 10.04 -39.49 -0.40 -1.22 16 26 C -0.13 -1.20 10.03 -39.64 -0.40 -1.59 16 27 C -0.08 -0.90 9.54 -39.18 -0.37 -1.27 16 28 H 0.20 3.11 7.80 -54.09 -0.42 2.69 16 29 H 0.12 2.56 6.34 -51.93 -0.33 2.23 16 30 H 0.06 1.01 6.67 -51.93 -0.35 0.66 16 31 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 32 H 0.06 0.97 7.41 -51.93 -0.39 0.59 16 33 H 0.07 1.12 7.52 -51.93 -0.39 0.73 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.41 4.84 6.51 -40.82 -0.27 4.57 16 39 H 0.14 1.48 7.65 -52.49 -0.40 1.08 16 40 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.13 1.27 6.41 -52.49 -0.34 0.93 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -34.54 376.45 -7.97 -42.51 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.36 Total: 8.33 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -2.45 Total: 2.57 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: -0.12 Total: -42.09 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.69 Total: -32.04 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.04 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.54 -7.97 -42.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490962300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.078 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds