Wall clock time and date at job start Tue Mar 31 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 113.01425 * 2 1 4 4 N 1.34771 * 120.00738 * 48.33336 * 3 2 1 5 5 O 1.21292 * 119.99643 * 228.33467 * 3 2 1 6 6 C 1.53942 * 113.74406 * 228.33254 * 2 1 3 7 7 N 1.47579 * 86.11657 * 269.26311 * 6 2 1 8 8 C 1.34777 * 134.49266 * 155.35992 * 7 6 2 9 9 O 1.21722 * 119.99817 * 359.97438 * 8 7 6 10 10 C 1.46247 * 120.00090 * 179.97438 * 8 7 6 11 11 C 1.35024 * 120.00028 * 179.97438 * 10 8 7 12 12 C 1.46969 * 120.00068 * 179.97438 * 11 10 8 13 13 C 1.40027 * 120.09621 * 359.73368 * 12 11 10 14 14 C 1.37598 * 119.89121 * 179.69548 * 13 12 11 15 15 C 1.39181 * 120.10373 * 0.59647 * 14 13 12 16 16 O 1.35572 * 119.90017 * 179.70079 * 15 14 13 17 17 C 1.34783 * 117.00031 * 174.42487 * 16 15 14 18 18 H 1.08006 * 119.99733 * 5.05268 * 17 16 15 19 19 C 1.38711 * 119.99891 * 185.05636 * 17 16 15 20 20 N 1.31509 * 120.00304 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99968 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47310 * 59.99744 * 21 19 17 23 23 H 1.48503 * 109.47334 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47079 * 299.99833 * 21 19 17 25 25 C 1.39181 * 120.19884 * 359.67522 * 15 14 13 26 26 C 1.37596 * 120.10329 * 0.02670 * 25 15 14 27 27 C 1.47583 * 91.01377 * 335.36079 * 7 6 2 28 28 H 1.08994 * 109.47161 * 191.66316 * 1 2 3 29 29 H 1.08994 * 109.47302 * 311.66857 * 1 2 3 30 30 H 1.09004 * 109.46580 * 71.66893 * 1 2 3 31 31 H 0.97003 * 119.99722 * 359.97438 * 4 3 2 32 32 H 0.96996 * 120.00384 * 179.97438 * 4 3 2 33 33 H 1.09001 * 113.77073 * 23.56501 * 6 2 1 34 34 H 1.08999 * 113.76822 * 154.96311 * 6 2 1 35 35 H 1.07999 * 120.00276 * 0.02562 * 10 8 7 36 36 H 1.07997 * 120.00213 * 0.02562 * 11 10 8 37 37 H 1.07992 * 120.05390 * 359.97438 * 13 12 11 38 38 H 1.07993 * 119.95198 * 180.27814 * 14 13 12 39 39 H 0.96998 * 119.99870 * 179.97438 * 20 19 17 40 40 H 1.07999 * 119.94443 * 180.02562 * 25 15 14 41 41 H 1.07997 * 120.04699 * 180.02562 * 26 25 15 42 42 H 1.08994 * 113.76360 * 270.33662 * 27 7 6 43 43 H 1.09002 * 113.76727 * 138.94471 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1192 1.3870 0.0000 4 7 1.6686 2.3107 0.8718 5 8 2.9990 1.6721 -0.7847 6 6 2.1499 -0.9368 -1.0526 7 7 2.1270 -1.9707 0.0002 8 6 2.0972 -3.3182 0.0003 9 8 2.0834 -3.9267 -1.0538 10 6 2.0816 -4.0491 1.2669 11 6 2.0512 -5.3990 1.2670 12 6 2.0360 -6.1337 2.5398 13 6 2.0586 -5.4358 3.7536 14 6 2.0380 -6.1277 4.9428 15 6 2.0072 -7.5192 4.9405 16 8 1.9931 -8.1968 6.1146 17 6 1.8467 -9.5350 6.0471 18 1 1.8293 -10.0285 5.0865 19 6 1.7185 -10.2782 7.2112 20 7 1.7402 -9.6773 8.3808 21 14 1.5149 -12.1328 7.1176 22 1 2.6958 -12.7269 6.4409 23 1 1.4002 -12.6881 8.4901 24 1 0.2875 -12.4578 6.3474 25 6 1.9904 -8.2170 3.7364 26 6 2.0046 -7.5335 2.5423 27 6 2.1498 -0.9366 1.0529 28 1 -0.3633 -1.0064 0.2077 29 1 -0.3633 0.6832 0.7676 30 1 -0.3632 0.3232 -0.9756 31 1 0.9647 2.0828 1.4992 32 1 2.0481 3.2034 0.8720 33 1 1.4899 -1.1510 -1.8932 34 1 3.1541 -0.6468 -1.3618 35 1 2.0934 -3.5093 2.2022 36 1 2.0389 -5.9390 0.3317 37 1 2.0877 -4.3563 3.7563 38 1 2.0508 -5.5904 5.8795 39 1 1.6501 -10.1971 9.1948 40 1 1.9661 -9.2967 3.7394 41 1 1.9911 -8.0759 1.6085 42 1 3.1539 -0.6467 1.3621 43 1 1.4896 -1.1507 1.8934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493058021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:09 Heat of formation + Delta-G solvation = -24.842849 kcal Electronic energy + Delta-G solvation = -26201.852156 eV Core-core repulsion = 22214.370024 eV Total energy + Delta-G solvation = -3987.482133 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.34868 -39.35639 -39.08854 -37.67346 -36.84055 -34.27420 -33.22614 -32.33746 -31.58119 -30.45679 -28.61400 -27.22196 -26.66414 -25.64863 -24.16477 -22.70112 -22.08047 -20.40519 -19.53534 -18.75024 -18.21233 -17.84746 -17.32615 -17.11493 -16.93629 -16.02147 -15.47400 -15.09259 -14.91999 -14.73561 -14.44570 -14.08172 -14.02441 -13.84974 -13.69698 -13.33513 -13.23309 -13.04456 -12.80106 -12.62591 -12.26233 -12.19667 -11.92267 -11.78601 -11.73862 -11.17840 -11.12421 -11.09926 -10.72675 -10.56806 -10.42193 -10.17913 -9.75546 -9.62898 -9.52360 -8.94589 -8.81359 -8.40870 -7.14034 -6.67203 -4.22101 1.03577 2.08820 2.11077 2.51128 2.57671 3.02672 3.03134 3.06665 3.07793 3.55545 3.67599 3.80587 4.16224 4.39306 4.43304 4.48889 4.70291 4.90153 4.96672 5.01992 5.07035 5.20352 5.23632 5.26306 5.34692 5.43076 5.50866 5.54222 5.64015 5.68268 5.73031 5.99339 6.09197 6.27947 6.43573 6.49604 6.58667 6.76526 6.80708 6.89656 7.10503 7.21281 7.25828 7.57064 7.61438 7.75948 7.77975 8.24361 8.77438 9.44016 10.49246 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.027139 B = 0.001853 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.467770 B =15104.626151 C =15818.074128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.129 4.129 3 C 0.537 3.463 4 N -0.851 5.851 5 O -0.537 6.537 6 C 0.133 3.867 7 N -0.644 5.644 8 C 0.582 3.418 9 O -0.553 6.553 10 C -0.278 4.278 11 C 0.040 3.960 12 C -0.199 4.199 13 C -0.042 4.042 14 C -0.200 4.200 15 C 0.167 3.833 16 O -0.162 6.162 17 C -0.393 4.393 18 H 0.097 0.903 19 C 0.042 3.958 20 N -0.852 5.852 21 Si 0.945 3.055 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.242 4.242 26 C -0.034 4.034 27 C 0.124 3.876 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.403 0.597 32 H 0.403 0.597 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.275 0.725 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.089 0.911 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.198 19.296 -10.744 22.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.133 4.133 3 C 0.320 3.680 4 N -0.415 5.415 5 O -0.412 6.412 6 C 0.010 3.990 7 N -0.381 5.381 8 C 0.377 3.623 9 O -0.433 6.433 10 C -0.299 4.299 11 C 0.020 3.980 12 C -0.200 4.200 13 C -0.061 4.061 14 C -0.219 4.219 15 C 0.110 3.890 16 O -0.062 6.062 17 C -0.469 4.469 18 H 0.114 0.886 19 C -0.165 4.165 20 N -0.484 5.484 21 Si 0.769 3.231 22 H -0.192 1.192 23 H -0.201 1.201 24 H -0.192 1.192 25 C -0.261 4.261 26 C -0.053 4.053 27 C 0.000 4.000 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.232 0.768 32 H 0.234 0.766 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.085 0.915 40 H 0.149 0.851 41 H 0.132 0.868 42 H 0.107 0.893 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.648 18.718 -11.341 22.045 hybrid contribution -0.222 -0.547 0.432 0.732 sum -2.871 18.171 -10.909 21.388 Atomic orbital electron populations 1.21584 0.90003 1.03750 1.02962 1.22759 0.98404 0.91638 1.00467 1.20152 0.81753 0.86245 0.79854 1.43868 1.42903 1.15468 1.39212 1.90777 1.30697 1.80548 1.39217 1.23039 1.01759 0.82143 0.92013 1.49671 1.75172 1.03776 1.09436 1.18071 0.74980 0.79189 0.90039 1.90795 1.51792 1.66730 1.34023 1.22321 1.16771 0.95032 0.95813 1.22298 0.85468 0.93486 0.96748 1.18446 1.16558 0.93102 0.91912 1.20860 0.95705 0.98387 0.91110 1.20142 1.12137 0.91380 0.98220 1.19616 0.91338 0.91682 0.86339 1.83902 1.75354 1.21566 1.25416 1.21432 1.51799 0.78617 0.95036 0.88569 1.25396 0.95997 1.00995 0.94069 1.70002 1.43730 1.37003 0.97701 0.85714 0.79466 0.79787 0.78168 1.19240 1.20072 1.19227 1.21102 1.12372 1.00825 0.91836 1.20990 0.94287 0.92792 0.97181 1.23141 1.01096 0.83542 0.92201 0.90531 0.91543 0.91209 0.76786 0.76614 0.89467 0.88461 0.86018 0.85904 0.86516 0.86137 0.91524 0.85103 0.86779 0.89279 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.63 9.06 37.16 0.34 -0.29 16 2 C -0.13 -0.88 1.29 -154.74 -0.20 -1.08 16 3 C 0.54 3.98 7.22 -10.99 -0.08 3.90 16 4 N -0.85 -3.00 8.76 31.22 0.27 -2.72 16 5 O -0.54 -6.33 16.73 5.55 0.09 -6.24 16 6 C 0.13 1.32 7.76 -2.98 -0.02 1.30 16 7 N -0.64 -7.23 3.47 -179.78 -0.62 -7.85 16 8 C 0.58 8.56 7.97 -13.04 -0.10 8.46 16 9 O -0.55 -10.15 16.96 5.17 0.09 -10.06 16 10 C -0.28 -3.85 9.20 -37.51 -0.34 -4.20 16 11 C 0.04 0.61 9.45 -37.19 -0.35 0.25 16 12 C -0.20 -3.35 5.87 -105.02 -0.62 -3.97 16 13 C -0.04 -0.71 9.40 -39.14 -0.37 -1.08 16 14 C -0.20 -3.91 9.97 -39.46 -0.39 -4.30 16 15 C 0.17 3.78 6.66 -38.88 -0.26 3.52 16 16 O -0.16 -4.33 9.74 0.73 0.01 -4.33 16 17 C -0.39 -10.35 9.48 30.91 0.29 -10.05 16 18 H 0.10 2.32 5.18 -52.48 -0.27 2.05 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 20 N -0.85 -23.61 13.67 55.48 0.76 -22.85 16 21 Si 0.94 19.34 29.55 -169.99 -5.02 14.32 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 23 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 C -0.24 -4.95 9.14 -39.47 -0.36 -5.31 16 26 C -0.03 -0.60 9.78 -39.15 -0.38 -0.98 16 27 C 0.12 0.91 7.53 -2.98 -0.02 0.88 16 28 H 0.08 0.48 7.99 -51.93 -0.41 0.07 16 29 H 0.07 0.17 6.98 -51.93 -0.36 -0.19 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.40 0.36 7.70 -40.82 -0.31 0.04 16 32 H 0.40 1.12 8.93 -40.82 -0.36 0.75 16 33 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.10 1.05 7.41 -51.93 -0.38 0.66 16 35 H 0.12 1.44 5.89 -52.49 -0.31 1.13 16 36 H 0.12 1.87 7.52 -52.49 -0.39 1.47 16 37 H 0.12 1.57 6.16 -52.49 -0.32 1.25 16 38 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.13 2.65 5.62 -52.49 -0.29 2.35 16 41 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.09 0.62 8.09 -51.93 -0.42 0.20 16 43 H 0.09 0.51 8.10 -51.93 -0.42 0.09 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -34.19 371.72 -6.90 -41.09 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.10 Total: 5.02 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -2.97 Total: -11.96 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.41 Total: -33.43 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: 0.19 Total: -20.63 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.19 -6.90 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493058021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.242 kcal (2) G-P(sol) polarization free energy of solvation -34.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds