Wall clock time and date at job start Tue Mar 31 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 113.01425 * 2 1 4 4 N 1.34771 * 120.00738 * 48.33336 * 3 2 1 5 5 O 1.21292 * 119.99643 * 228.33467 * 3 2 1 6 6 C 1.53942 * 113.74406 * 228.33254 * 2 1 3 7 7 N 1.47579 * 86.11657 * 269.26311 * 6 2 1 8 8 C 1.34777 * 134.49266 * 155.35992 * 7 6 2 9 9 O 1.21722 * 119.99817 * 359.97438 * 8 7 6 10 10 C 1.46247 * 120.00090 * 179.97438 * 8 7 6 11 11 C 1.35024 * 120.00028 * 179.97438 * 10 8 7 12 12 C 1.46969 * 120.00068 * 179.97438 * 11 10 8 13 13 C 1.40027 * 120.09621 * 359.73368 * 12 11 10 14 14 C 1.37598 * 119.89121 * 179.69548 * 13 12 11 15 15 C 1.39181 * 120.10373 * 0.59647 * 14 13 12 16 16 O 1.35572 * 119.90017 * 179.70079 * 15 14 13 17 17 C 1.34783 * 117.00031 * 174.42487 * 16 15 14 18 18 H 1.08006 * 119.99733 * 5.05268 * 17 16 15 19 19 C 1.38711 * 119.99891 * 185.05636 * 17 16 15 20 20 N 1.31509 * 120.00304 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99968 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47310 * 59.99744 * 21 19 17 23 23 H 1.48503 * 109.47334 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47079 * 299.99833 * 21 19 17 25 25 C 1.39181 * 120.19884 * 359.67522 * 15 14 13 26 26 C 1.37596 * 120.10329 * 0.02670 * 25 15 14 27 27 C 1.47583 * 91.01377 * 335.36079 * 7 6 2 28 28 H 1.08994 * 109.47161 * 191.66316 * 1 2 3 29 29 H 1.08994 * 109.47302 * 311.66857 * 1 2 3 30 30 H 1.09004 * 109.46580 * 71.66893 * 1 2 3 31 31 H 0.97003 * 119.99722 * 359.97438 * 4 3 2 32 32 H 0.96996 * 120.00384 * 179.97438 * 4 3 2 33 33 H 1.09001 * 113.77073 * 23.56501 * 6 2 1 34 34 H 1.08999 * 113.76822 * 154.96311 * 6 2 1 35 35 H 1.07999 * 120.00276 * 0.02562 * 10 8 7 36 36 H 1.07997 * 120.00213 * 0.02562 * 11 10 8 37 37 H 1.07992 * 120.05390 * 359.97438 * 13 12 11 38 38 H 1.07993 * 119.95198 * 180.27814 * 14 13 12 39 39 H 0.96998 * 119.99870 * 179.97438 * 20 19 17 40 40 H 1.07999 * 119.94443 * 180.02562 * 25 15 14 41 41 H 1.07997 * 120.04699 * 180.02562 * 26 25 15 42 42 H 1.08994 * 113.76360 * 270.33662 * 27 7 6 43 43 H 1.09002 * 113.76727 * 138.94471 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1192 1.3870 0.0000 4 7 1.6686 2.3107 0.8718 5 8 2.9990 1.6721 -0.7847 6 6 2.1499 -0.9368 -1.0526 7 7 2.1270 -1.9707 0.0002 8 6 2.0972 -3.3182 0.0003 9 8 2.0834 -3.9267 -1.0538 10 6 2.0816 -4.0491 1.2669 11 6 2.0512 -5.3990 1.2670 12 6 2.0360 -6.1337 2.5398 13 6 2.0586 -5.4358 3.7536 14 6 2.0380 -6.1277 4.9428 15 6 2.0072 -7.5192 4.9405 16 8 1.9931 -8.1968 6.1146 17 6 1.8467 -9.5350 6.0471 18 1 1.8293 -10.0285 5.0865 19 6 1.7185 -10.2782 7.2112 20 7 1.7402 -9.6773 8.3808 21 14 1.5149 -12.1328 7.1176 22 1 2.6958 -12.7269 6.4409 23 1 1.4002 -12.6881 8.4901 24 1 0.2875 -12.4578 6.3474 25 6 1.9904 -8.2170 3.7364 26 6 2.0046 -7.5335 2.5423 27 6 2.1498 -0.9366 1.0529 28 1 -0.3633 -1.0064 0.2077 29 1 -0.3633 0.6832 0.7676 30 1 -0.3632 0.3232 -0.9756 31 1 0.9647 2.0828 1.4992 32 1 2.0481 3.2034 0.8720 33 1 1.4899 -1.1510 -1.8932 34 1 3.1541 -0.6468 -1.3618 35 1 2.0934 -3.5093 2.2022 36 1 2.0389 -5.9390 0.3317 37 1 2.0877 -4.3563 3.7563 38 1 2.0508 -5.5904 5.8795 39 1 1.6501 -10.1971 9.1948 40 1 1.9661 -9.2967 3.7394 41 1 1.9911 -8.0759 1.6085 42 1 3.1539 -0.6467 1.3621 43 1 1.4896 -1.1507 1.8934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493058021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:09 Heat of formation + Delta-G solvation = -49.952229 kcal Electronic energy + Delta-G solvation = -26202.940981 eV Core-core repulsion = 22214.370024 eV Total energy + Delta-G solvation = -3988.570957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.08441 -40.85043 -40.14434 -38.71604 -38.30237 -34.81239 -34.74104 -34.00413 -32.35524 -31.95716 -29.88542 -28.12225 -27.50590 -27.28424 -25.00552 -23.98568 -23.49565 -21.64204 -20.43311 -19.91583 -19.40243 -18.82152 -18.71005 -17.97259 -17.77488 -17.03831 -16.48943 -16.26244 -16.22496 -15.99698 -15.76612 -15.60845 -15.15863 -15.01375 -14.64908 -14.57438 -14.21248 -14.13288 -13.96912 -13.59480 -13.40531 -13.30795 -13.19181 -12.84896 -12.75183 -12.67509 -12.56444 -12.23151 -12.14212 -11.78750 -11.24386 -11.20952 -11.11535 -10.78638 -10.64578 -10.58065 -9.88598 -9.80798 -8.68014 -8.51690 -6.17681 -0.26858 0.59369 1.11464 1.36290 1.47257 1.51062 1.51740 1.70345 2.15753 2.28746 2.62343 2.86653 3.03897 3.18232 3.37529 3.43749 3.75440 3.89331 3.95049 4.02068 4.08948 4.20260 4.31809 4.39865 4.43578 4.48049 4.54959 4.65023 4.73559 4.80045 4.84136 4.90027 4.94965 5.02898 5.19635 5.26873 5.31533 5.35479 5.59891 5.64597 5.80409 5.90640 5.97727 6.10682 6.44006 6.60362 6.92660 7.11131 7.32671 7.69476 8.69963 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.027139 B = 0.001853 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.467770 B =15104.626151 C =15818.074128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.110 4.110 3 C 0.538 3.462 4 N -0.827 5.827 5 O -0.587 6.587 6 C 0.119 3.881 7 N -0.642 5.642 8 C 0.572 3.428 9 O -0.597 6.597 10 C -0.240 4.240 11 C 0.019 3.981 12 C -0.171 4.171 13 C -0.035 4.035 14 C -0.205 4.205 15 C 0.130 3.870 16 O -0.218 6.218 17 C -0.417 4.417 18 H 0.105 0.895 19 C -0.018 4.018 20 N -0.913 5.913 21 Si 1.017 2.983 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.257 1.257 25 C -0.250 4.250 26 C -0.040 4.040 27 C 0.123 3.877 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.420 0.580 32 H 0.410 0.590 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.153 0.847 36 H 0.123 0.877 37 H 0.161 0.839 38 H 0.125 0.875 39 H 0.275 0.725 40 H 0.124 0.876 41 H 0.143 0.857 42 H 0.098 0.902 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.007 21.940 -12.121 25.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.114 4.114 3 C 0.322 3.678 4 N -0.391 5.391 5 O -0.467 6.467 6 C -0.003 4.003 7 N -0.376 5.376 8 C 0.367 3.633 9 O -0.481 6.481 10 C -0.261 4.261 11 C -0.001 4.001 12 C -0.172 4.172 13 C -0.053 4.053 14 C -0.224 4.224 15 C 0.078 3.922 16 O -0.123 6.123 17 C -0.493 4.493 18 H 0.122 0.878 19 C -0.217 4.217 20 N -0.549 5.549 21 Si 0.836 3.164 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.181 1.181 25 C -0.269 4.269 26 C -0.058 4.058 27 C 0.001 3.999 28 H 0.086 0.914 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.252 0.748 32 H 0.242 0.758 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.170 0.830 36 H 0.140 0.860 37 H 0.179 0.821 38 H 0.143 0.857 39 H 0.084 0.916 40 H 0.142 0.858 41 H 0.160 0.840 42 H 0.116 0.884 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.485 21.462 -12.730 25.195 hybrid contribution 0.046 -0.801 0.388 0.891 sum -3.439 20.661 -12.342 24.311 Atomic orbital electron populations 1.21635 0.88204 1.04121 1.04181 1.22591 0.99413 0.90874 0.98491 1.20166 0.81139 0.86748 0.79779 1.43693 1.42389 1.15049 1.38003 1.90773 1.33042 1.81359 1.41479 1.23170 1.01560 0.82832 0.92785 1.49752 1.72936 1.03286 1.11634 1.18257 0.75033 0.80371 0.89647 1.90784 1.53777 1.68078 1.35430 1.22615 1.12176 0.94606 0.96665 1.22176 0.88067 0.94106 0.95790 1.18744 1.12696 0.92925 0.92817 1.21270 0.93946 1.00444 0.89610 1.20426 1.11812 0.90376 0.99830 1.20206 0.92581 0.93099 0.86316 1.83884 1.79286 1.21825 1.27326 1.21845 1.52490 0.79212 0.95720 0.87767 1.26591 0.95597 1.06039 0.93471 1.70136 1.47433 1.38889 0.98469 0.84663 0.79890 0.73434 0.78384 1.18207 1.19589 1.18142 1.21198 1.12580 1.00802 0.92296 1.21307 0.93716 0.93589 0.97218 1.23488 1.02498 0.81624 0.92313 0.91392 0.88286 0.91313 0.74815 0.75784 0.89948 0.89665 0.82997 0.85961 0.82132 0.85713 0.91581 0.85801 0.83956 0.88395 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 9.06 71.98 0.65 -0.10 16 2 C -0.11 -1.13 1.29 -52.27 -0.07 -1.20 16 3 C 0.54 6.44 7.22 87.66 0.63 7.07 16 4 N -0.83 -2.64 8.76 -173.53 -1.52 -4.16 16 5 O -0.59 -13.04 16.73 -3.07 -0.05 -13.09 16 6 C 0.12 2.17 7.76 86.48 0.67 2.84 16 7 N -0.64 -12.42 3.47 -840.92 -2.92 -15.34 16 8 C 0.57 15.14 7.97 86.32 0.69 15.82 16 9 O -0.60 -21.04 16.96 -4.42 -0.07 -21.11 16 10 C -0.24 -5.55 9.20 23.61 0.22 -5.33 16 11 C 0.02 0.50 9.45 23.82 0.23 0.72 16 12 C -0.17 -5.21 5.87 -20.12 -0.12 -5.33 16 13 C -0.04 -1.05 9.40 22.55 0.21 -0.84 16 14 C -0.21 -7.90 9.97 22.35 0.22 -7.68 16 15 C 0.13 6.08 6.66 22.72 0.15 6.23 16 16 O -0.22 -12.45 9.74 -20.30 -0.20 -12.65 16 17 C -0.42 -23.20 9.48 67.93 0.64 -22.56 16 18 H 0.11 5.30 5.18 -2.91 -0.02 5.28 16 19 C -0.02 -0.98 5.49 84.85 0.47 -0.52 16 20 N -0.91 -53.73 13.67 21.62 0.30 -53.44 16 21 Si 1.02 41.10 29.55 68.60 2.03 43.13 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 23 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 24 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 25 C -0.25 -10.33 9.14 22.34 0.20 -10.12 16 26 C -0.04 -1.35 9.78 22.55 0.22 -1.13 16 27 C 0.12 1.23 7.53 86.48 0.65 1.89 16 28 H 0.07 0.59 7.99 -2.39 -0.02 0.57 16 29 H 0.10 -0.04 6.98 -2.39 -0.02 -0.05 16 30 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.42 -1.34 7.70 -92.71 -0.71 -2.06 16 32 H 0.41 0.87 8.93 -92.71 -0.83 0.04 16 33 H 0.08 1.56 8.10 -2.39 -0.02 1.54 16 34 H 0.09 1.79 7.41 -2.39 -0.02 1.77 16 35 H 0.15 2.56 5.89 -2.91 -0.02 2.55 16 36 H 0.12 3.39 7.52 -2.91 -0.02 3.37 16 37 H 0.16 3.34 6.16 -2.91 -0.02 3.33 16 38 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 39 H 0.28 14.85 8.31 -92.71 -0.77 14.08 16 40 H 0.12 5.20 5.62 -2.91 -0.02 5.18 16 41 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 42 H 0.10 0.91 8.09 -2.39 -0.02 0.89 16 43 H 0.13 0.55 8.10 -2.39 -0.02 0.53 16 Total: -1.00 -81.75 371.72 2.78 -78.97 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -0.46 Total: 17.91 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 5.67 Total: -20.23 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -4.14 Total: -72.93 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: -0.32 Total: -46.85 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -81.75 2.78 -78.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493058021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.017 kcal (2) G-P(sol) polarization free energy of solvation -81.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds