Wall clock time and date at job start Tue Mar 31 2020 07:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.17503 * 2 1 4 4 C 1.52982 * 109.21759 * 240.63681 * 2 1 3 5 5 N 1.47262 * 108.19912 * 286.37985 * 4 2 1 6 6 C 1.34777 * 121.35162 * 118.53258 * 5 4 2 7 7 O 1.21718 * 120.00306 * 359.97438 * 6 5 4 8 8 C 1.46249 * 119.99967 * 179.97438 * 6 5 4 9 9 C 1.35028 * 120.00203 * 173.14719 * 8 6 5 10 10 C 1.46953 * 119.99953 * 348.70470 * 9 8 6 11 11 C 1.40031 * 120.09828 * 316.37622 * 10 9 8 12 12 C 1.37603 * 119.89565 * 179.72416 * 11 10 9 13 13 C 1.39177 * 120.10003 * 0.52799 * 12 11 10 14 14 O 1.35574 * 119.89558 * 179.74520 * 13 12 11 15 15 C 1.34774 * 116.99919 * 174.37665 * 14 13 12 16 16 H 1.08004 * 120.00094 * 5.06719 * 15 14 13 17 17 C 1.38721 * 120.00199 * 185.05934 * 15 14 13 18 18 N 1.31504 * 119.99730 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00184 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47047 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47180 * 119.99930 * 19 17 15 22 22 H 1.48499 * 109.47134 * 240.00260 * 19 17 15 23 23 C 1.39168 * 120.20263 * 359.76597 * 13 12 11 24 24 C 1.37594 * 120.10615 * 359.95535 * 23 13 12 25 25 C 1.47043 * 117.29370 * 298.51047 * 5 4 2 26 26 C 1.50435 * 108.89230 * 42.73981 * 25 5 4 27 27 O 1.21286 * 118.48831 * 167.29320 * 26 25 5 28 28 N 1.33385 * 123.02109 * 347.26735 * 26 25 5 29 29 H 1.08995 * 109.47018 * 300.64494 * 1 2 3 30 30 H 1.08998 * 109.46983 * 60.64578 * 1 2 3 31 31 H 1.09000 * 109.47215 * 180.64431 * 1 2 3 32 32 H 1.08997 * 109.72416 * 46.06624 * 4 2 1 33 33 H 1.08997 * 109.72174 * 166.72178 * 4 2 1 34 34 H 1.07999 * 120.00184 * 353.15437 * 8 6 5 35 35 H 1.07997 * 120.00066 * 168.69675 * 9 8 6 36 36 H 1.07999 * 120.04753 * 359.97165 * 11 10 9 37 37 H 1.08003 * 119.94342 * 180.27487 * 12 11 10 38 38 H 0.96996 * 120.00131 * 180.02562 * 18 17 15 39 39 H 1.08006 * 119.94827 * 179.97438 * 23 13 12 40 40 H 1.08007 * 120.05668 * 179.97438 * 24 23 13 41 41 H 1.08998 * 109.57106 * 282.91508 * 25 5 4 42 42 H 1.09002 * 109.66388 * 162.62242 * 25 5 4 43 43 H 0.97001 * 117.69928 * 184.36117 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8880 1.0295 0.0000 4 6 2.0336 -0.7083 -1.2590 5 7 1.8124 -2.1547 -1.0925 6 6 1.0087 -2.8419 -1.9281 7 8 0.4477 -2.2673 -2.8428 8 6 0.8105 -4.2781 -1.7358 9 6 -0.0985 -4.9403 -2.4830 10 6 -1.0580 -4.1918 -3.3068 11 6 -1.7028 -3.0641 -2.7839 12 6 -2.5962 -2.3630 -3.5609 13 6 -2.8676 -2.7795 -4.8608 14 8 -3.7524 -2.0886 -5.6209 15 6 -3.8848 -2.4716 -6.9063 16 1 -3.3618 -3.3455 -7.2660 17 6 -4.6929 -1.7436 -7.7673 18 7 -5.3294 -0.6794 -7.3294 19 14 -4.8769 -2.2749 -9.5486 20 1 -4.0640 -3.4944 -9.7880 21 1 -6.3046 -2.5687 -9.8327 22 1 -4.4088 -1.1844 -10.4413 23 6 -2.2338 -3.9032 -5.3826 24 6 -1.3347 -4.6073 -4.6151 25 6 2.5046 -2.8188 0.0220 26 6 2.4106 -1.9455 1.2433 27 8 2.7141 -2.4190 2.3178 28 7 2.0094 -0.6742 1.1987 29 1 -0.3633 0.5238 0.8841 30 1 -0.3633 0.5038 -0.8957 31 1 -0.3634 -1.0276 0.0116 32 1 1.4825 -0.3496 -2.1282 33 1 3.0976 -0.5121 -1.3908 34 1 1.3911 -4.8091 -0.9959 35 1 -0.1204 -6.0200 -2.4754 36 1 -1.4961 -2.7429 -1.7737 37 1 -3.0905 -1.4905 -3.1598 38 1 -5.8947 -0.1706 -7.9313 39 1 -2.4478 -4.2231 -6.3918 40 1 -0.8435 -5.4795 -5.0207 41 1 3.5520 -2.9716 -0.2378 42 1 2.0345 -3.7812 0.2244 43 1 2.0392 -0.1628 2.0224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493677094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:15 Heat of formation + Delta-G solvation = -28.642206 kcal Electronic energy + Delta-G solvation = -27918.948497 eV Core-core repulsion = 23931.301611 eV Total energy + Delta-G solvation = -3987.646885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.00883 -39.50273 -38.72240 -37.18680 -36.32597 -34.65037 -33.15955 -32.18400 -31.40783 -30.17443 -28.43727 -28.11052 -26.76626 -25.42217 -23.49553 -22.57521 -21.82003 -20.98708 -19.61360 -18.87545 -17.97611 -17.67783 -17.29947 -16.79781 -16.66947 -16.02793 -15.20247 -15.01621 -14.70791 -14.59134 -14.43221 -14.15528 -13.88208 -13.70886 -13.54039 -13.24823 -13.07391 -12.79808 -12.65956 -12.50816 -12.26236 -12.16675 -11.76783 -11.73608 -11.63577 -11.39354 -11.06217 -10.72160 -10.65126 -10.53549 -10.43287 -9.58051 -9.52184 -9.46964 -9.21511 -8.84610 -8.74181 -7.97493 -6.92103 -6.49700 -4.05243 1.14096 2.22467 2.36427 2.61489 2.63463 2.99711 3.11233 3.12394 3.17710 3.46507 3.94005 4.10652 4.26970 4.59198 4.65310 4.69198 4.76769 4.88188 5.01350 5.07507 5.21407 5.30486 5.33205 5.43064 5.50243 5.55363 5.59438 5.68948 5.78946 5.97669 6.04333 6.20722 6.26378 6.36868 6.44756 6.53703 6.73640 6.93738 6.98214 7.08492 7.22003 7.33013 7.41336 7.46111 7.81169 7.87196 7.97086 8.30991 8.96146 9.67433 10.68100 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.021650 B = 0.002716 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.968761 B =10308.466559 C =11074.491460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.122 3.878 3 H 0.097 0.903 4 C 0.101 3.899 5 N -0.623 5.623 6 C 0.550 3.450 7 O -0.500 6.500 8 C -0.277 4.277 9 C 0.037 3.963 10 C -0.194 4.194 11 C 0.012 3.988 12 C -0.202 4.202 13 C 0.172 3.828 14 O -0.172 6.172 15 C -0.390 4.390 16 H 0.095 0.905 17 C 0.039 3.961 18 N -0.859 5.859 19 Si 0.942 3.058 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.250 4.250 24 C -0.039 4.039 25 C 0.099 3.901 26 C 0.514 3.486 27 O -0.553 6.553 28 N -0.711 5.711 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.116 0.884 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.270 0.730 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.122 0.878 43 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.866 -2.096 13.011 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.017 3.983 3 H 0.115 0.885 4 C -0.022 4.022 5 N -0.361 5.361 6 C 0.343 3.657 7 O -0.375 6.375 8 C -0.298 4.298 9 C 0.017 3.983 10 C -0.194 4.194 11 C -0.006 4.006 12 C -0.222 4.222 13 C 0.117 3.883 14 O -0.074 6.074 15 C -0.466 4.466 16 H 0.112 0.888 17 C -0.166 4.166 18 N -0.493 5.493 19 Si 0.767 3.233 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.270 4.270 24 C -0.057 4.057 25 C -0.027 4.027 26 C 0.300 3.700 27 O -0.431 6.431 28 N -0.362 5.362 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.134 0.866 33 H 0.093 0.907 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.118 0.882 37 H 0.131 0.869 38 H 0.080 0.920 39 H 0.144 0.856 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.140 0.860 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 14.364 -1.790 12.760 19.296 hybrid contribution 0.111 0.006 -0.493 0.505 sum 14.474 -1.784 12.267 19.057 Atomic orbital electron populations 1.22240 0.94045 1.03214 1.02876 1.21407 0.95522 0.96671 0.84746 0.88518 1.21939 1.01704 0.80356 0.98208 1.48152 1.48930 1.08597 1.30424 1.18472 0.77901 0.87907 0.81436 1.91006 1.45878 1.70185 1.30479 1.22617 1.06195 0.93698 1.07287 1.22386 0.88824 0.98477 0.88583 1.18297 1.04386 1.00912 0.95852 1.20420 0.91765 0.91120 0.97333 1.19995 1.05291 1.03416 0.93455 1.19526 0.87572 0.90138 0.91052 1.83903 1.49592 1.51577 1.22326 1.21451 1.29799 1.12518 0.82802 0.88797 1.25332 0.95815 0.95308 1.00101 1.70026 1.27359 1.15729 1.36197 0.85629 0.78536 0.78790 0.80390 1.19010 1.20095 1.20081 1.20958 1.04346 0.99748 1.01906 1.20745 0.94971 0.97270 0.92762 1.21853 1.00136 0.97166 0.83594 1.20382 0.76176 0.82547 0.90902 1.90800 1.50298 1.72180 1.29808 1.45515 1.65414 1.12197 1.13084 0.92224 0.90501 0.92095 0.86551 0.90665 0.85871 0.85889 0.88212 0.86851 0.91963 0.85620 0.87561 0.88078 0.85994 0.76593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 9.37 37.16 0.35 -1.13 16 2 C 0.12 0.89 3.87 -68.40 -0.26 0.62 16 3 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 4 C 0.10 0.89 5.89 -3.64 -0.02 0.86 16 5 N -0.62 -6.41 2.75 -175.87 -0.48 -6.89 16 6 C 0.55 7.44 6.68 -13.04 -0.09 7.35 16 7 O -0.50 -8.81 11.66 5.17 0.06 -8.75 16 8 C -0.28 -3.29 9.14 -37.51 -0.34 -3.64 16 9 C 0.04 0.49 9.80 -37.19 -0.36 0.12 16 10 C -0.19 -3.40 4.54 -105.03 -0.48 -3.88 16 11 C 0.01 0.23 6.60 -39.14 -0.26 -0.03 16 12 C -0.20 -4.45 9.97 -39.46 -0.39 -4.84 16 13 C 0.17 4.25 6.66 -38.89 -0.26 3.99 16 14 O -0.17 -4.94 9.74 0.75 0.01 -4.93 16 15 C -0.39 -10.89 9.48 30.91 0.29 -10.60 16 16 H 0.09 2.44 5.18 -52.48 -0.27 2.16 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -25.05 13.67 55.48 0.76 -24.29 16 19 Si 0.94 20.40 29.55 -169.99 -5.02 15.37 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 C -0.25 -5.54 9.14 -39.47 -0.36 -5.90 16 24 C -0.04 -0.73 9.78 -39.15 -0.38 -1.11 16 25 C 0.10 0.84 6.35 -5.03 -0.03 0.80 16 26 C 0.51 5.19 7.84 -11.73 -0.09 5.09 16 27 O -0.55 -7.51 17.80 5.55 0.10 -7.41 16 28 N -0.71 -5.69 5.00 -54.79 -0.27 -5.97 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.68 8.00 -51.93 -0.42 0.27 16 32 H 0.12 1.23 6.98 -51.93 -0.36 0.86 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.12 1.06 6.17 -52.49 -0.32 0.74 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.10 1.72 7.02 -52.49 -0.37 1.35 16 37 H 0.11 2.43 8.06 -52.48 -0.42 2.01 16 38 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.13 2.77 5.62 -52.48 -0.29 2.47 16 40 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.12 0.95 5.75 -51.93 -0.30 0.65 16 43 H 0.40 2.76 8.80 -40.82 -0.36 2.40 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -34.70 358.82 -7.45 -42.15 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.21 Total: 6.61 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -2.79 Total: -11.31 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.00 Total: -37.14 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: 0.17 Total: -21.09 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.70 -7.45 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493677094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.513 kcal (2) G-P(sol) polarization free energy of solvation -34.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds