Wall clock time and date at job start Tue Mar 31 2020 07:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.17845 * 2 1 4 4 C 1.52990 * 109.21841 * 119.36039 * 2 1 3 5 5 N 1.47267 * 108.22833 * 167.08472 * 4 2 1 6 6 C 1.34772 * 121.35798 * 118.49168 * 5 4 2 7 7 O 1.21727 * 119.99775 * 0.02562 * 6 5 4 8 8 C 1.46255 * 120.00331 * 180.02562 * 6 5 4 9 9 C 1.35021 * 119.99950 * 173.15043 * 8 6 5 10 10 C 1.46956 * 120.00343 * 348.68954 * 9 8 6 11 11 C 1.40030 * 120.09754 * 316.38364 * 10 9 8 12 12 C 1.37603 * 119.89380 * 179.69121 * 11 10 9 13 13 C 1.39177 * 120.10303 * 0.60811 * 12 11 10 14 14 O 1.35566 * 119.89998 * 179.68998 * 13 12 11 15 15 C 1.34788 * 117.00232 * 174.33314 * 14 13 12 16 16 H 1.08000 * 119.99680 * 5.06470 * 15 14 13 17 17 C 1.38712 * 119.99928 * 185.06722 * 15 14 13 18 18 N 1.31506 * 120.00330 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99844 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46711 * 89.99684 * 19 17 15 21 21 H 1.48498 * 109.47323 * 209.99684 * 19 17 15 22 22 H 1.48494 * 109.46960 * 330.00179 * 19 17 15 23 23 C 1.39174 * 120.20024 * 359.66987 * 13 12 11 24 24 C 1.37600 * 120.10677 * 0.02562 * 23 13 12 25 25 C 1.47052 * 117.29089 * 298.47230 * 5 4 2 26 26 C 1.50445 * 108.89037 * 42.73665 * 25 5 4 27 27 O 1.21277 * 118.48649 * 167.29145 * 26 25 5 28 28 N 1.33375 * 123.02100 * 347.31520 * 26 25 5 29 29 H 1.08991 * 109.47326 * 300.63800 * 1 2 3 30 30 H 1.09001 * 109.46811 * 60.64463 * 1 2 3 31 31 H 1.09003 * 109.46850 * 180.63764 * 1 2 3 32 32 H 1.08994 * 109.72286 * 47.38746 * 4 2 1 33 33 H 1.09002 * 109.71560 * 286.77606 * 4 2 1 34 34 H 1.07999 * 119.99933 * 353.14589 * 8 6 5 35 35 H 1.08004 * 119.99930 * 168.69260 * 9 8 6 36 36 H 1.07995 * 120.05052 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.94629 * 180.31749 * 12 11 10 38 38 H 0.97003 * 120.00029 * 179.97438 * 18 17 15 39 39 H 1.08007 * 119.94627 * 180.02562 * 23 13 12 40 40 H 1.07998 * 120.05328 * 180.02562 * 24 23 13 41 41 H 1.09001 * 109.56487 * 162.55610 * 25 5 4 42 42 H 1.08993 * 109.56911 * 282.79582 * 25 5 4 43 43 H 0.97002 * 117.70545 * 184.29373 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8880 1.0295 0.0000 4 6 2.0335 -0.7083 1.2591 5 7 3.4726 -0.9740 1.0938 6 6 4.3850 -0.4398 1.9295 7 8 4.0255 0.2785 2.8442 8 6 5.8069 -0.7230 1.7376 9 6 6.7301 -0.0811 2.4852 10 6 6.3370 1.0708 3.3087 11 6 5.4830 2.0494 2.7854 12 6 5.1125 3.1229 3.5623 13 6 5.5953 3.2436 4.8621 14 8 5.2327 4.3062 5.6218 15 6 5.6376 4.3060 6.9074 16 1 6.2914 3.5255 7.2675 17 6 5.2144 5.3083 7.7679 18 7 4.4187 6.2590 7.3294 19 14 5.7750 5.3076 9.5499 20 1 7.0383 6.0788 9.6716 21 1 4.7292 5.9336 10.3981 22 1 6.0034 3.9099 9.9964 23 6 6.4490 2.2764 5.3844 24 6 6.8199 1.1962 4.6171 25 6 3.8736 -1.8463 -0.0201 26 6 3.0801 -1.4717 -1.2422 27 8 3.4285 -1.9143 -2.3162 28 7 2.0114 -0.6749 -1.1988 29 1 -0.3633 0.5237 0.8841 30 1 -0.3633 0.5038 -0.8957 31 1 -0.3633 -1.0276 0.0114 32 1 1.4987 -1.6488 1.3909 33 1 1.8749 -0.0701 2.1284 34 1 6.1186 -1.4456 0.9979 35 1 7.7574 -0.4142 2.4779 36 1 5.1114 1.9588 1.7754 37 1 4.4498 3.8755 3.1613 38 1 4.1225 6.9597 7.9313 39 1 6.8209 2.3740 6.3937 40 1 7.4820 0.4460 5.0234 41 1 4.9369 -1.7161 -0.2212 42 1 3.6760 -2.8859 0.2410 43 1 1.5195 -0.5349 -2.0230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493677095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:19 Heat of formation + Delta-G solvation = -29.940884 kcal Electronic energy + Delta-G solvation = -27603.775332 eV Core-core repulsion = 23616.072132 eV Total energy + Delta-G solvation = -3987.703200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.95833 -39.51425 -38.72042 -37.19451 -36.35780 -34.75770 -33.16096 -32.18115 -31.56052 -30.17015 -28.49523 -28.18550 -26.68065 -25.40648 -23.24768 -22.55081 -21.81906 -21.02078 -19.94819 -18.78553 -17.98079 -17.77432 -17.26732 -16.74017 -16.60082 -15.97969 -15.67480 -14.98082 -14.78162 -14.59596 -14.38740 -14.03981 -13.88127 -13.62594 -13.44477 -13.27374 -13.07830 -12.86654 -12.72079 -12.52744 -12.44682 -12.18277 -11.88515 -11.78623 -11.72367 -11.40438 -11.05259 -10.71801 -10.67015 -10.54665 -10.44204 -9.58547 -9.51597 -9.47894 -9.21073 -8.85955 -8.73965 -7.97470 -6.92016 -6.49360 -4.05061 1.13890 2.22697 2.36499 2.60891 2.63439 2.96928 3.11474 3.12654 3.17180 3.45683 3.94272 4.07024 4.28013 4.55834 4.60793 4.65578 4.75183 4.83421 5.00484 5.07510 5.14749 5.20571 5.28448 5.31033 5.44545 5.53343 5.58715 5.68773 5.69869 5.79654 6.00617 6.20643 6.26272 6.36571 6.43574 6.53768 6.73751 6.92889 6.98396 7.08354 7.21080 7.32986 7.41390 7.46251 7.80758 7.87378 7.97236 8.29734 8.96318 9.67511 10.68339 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019377 B = 0.002652 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.656966 B =10555.504041 C =11499.484275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.121 3.879 3 H 0.083 0.917 4 C 0.102 3.898 5 N -0.626 5.626 6 C 0.550 3.450 7 O -0.501 6.501 8 C -0.277 4.277 9 C 0.037 3.963 10 C -0.194 4.194 11 C 0.011 3.989 12 C -0.202 4.202 13 C 0.172 3.828 14 O -0.172 6.172 15 C -0.390 4.390 16 H 0.094 0.906 17 C 0.040 3.960 18 N -0.859 5.859 19 Si 0.942 3.058 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.250 4.250 24 C -0.039 4.039 25 C 0.099 3.901 26 C 0.514 3.486 27 O -0.553 6.553 28 N -0.711 5.711 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.271 0.729 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.123 0.877 42 H 0.102 0.898 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.537 -15.122 -13.006 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.015 3.985 3 H 0.101 0.899 4 C -0.021 4.021 5 N -0.363 5.363 6 C 0.342 3.658 7 O -0.376 6.376 8 C -0.298 4.298 9 C 0.018 3.982 10 C -0.195 4.195 11 C -0.007 4.007 12 C -0.222 4.222 13 C 0.117 3.883 14 O -0.074 6.074 15 C -0.466 4.466 16 H 0.112 0.888 17 C -0.165 4.165 18 N -0.493 5.493 19 Si 0.766 3.234 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.191 1.191 23 C -0.270 4.270 24 C -0.057 4.057 25 C -0.028 4.028 26 C 0.300 3.700 27 O -0.431 6.431 28 N -0.364 5.364 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.118 0.882 37 H 0.132 0.868 38 H 0.081 0.919 39 H 0.144 0.856 40 H 0.125 0.875 41 H 0.141 0.859 42 H 0.120 0.880 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -3.662 -14.543 -12.749 19.683 hybrid contribution -0.049 -0.116 0.496 0.512 sum -3.711 -14.658 -12.253 19.462 Atomic orbital electron populations 1.22122 0.93199 1.03153 1.03654 1.21423 0.95156 0.97120 0.84781 0.89934 1.21958 0.80628 1.01414 0.98123 1.48202 1.06741 1.50858 1.30539 1.18506 0.86658 0.79176 0.81411 1.91010 1.80845 1.35282 1.30512 1.22607 0.91839 1.08005 1.07318 1.22389 0.97609 0.89668 0.88545 1.18300 1.07735 0.97575 0.95869 1.20429 0.91504 0.91424 0.97363 1.20000 1.07136 1.01569 0.93466 1.19525 0.91167 0.86552 0.91050 1.83904 1.65788 1.35353 1.22322 1.21404 1.29966 1.12446 0.82805 0.88843 1.25329 0.96081 0.95011 1.00108 1.70020 1.30958 1.12031 1.36321 0.85696 0.78472 0.78988 0.80208 1.19808 1.20203 1.19103 1.20961 1.06277 0.97829 1.01895 1.20747 0.96464 0.95776 0.92751 1.21864 1.01266 0.96050 0.83575 1.20374 0.80734 0.78007 0.90921 1.90798 1.68103 1.54326 1.29839 1.45623 1.29480 1.48341 1.12909 0.90120 0.91544 0.91669 0.90613 0.86631 0.85818 0.85845 0.88191 0.86826 0.91909 0.85608 0.87536 0.85944 0.88036 0.76585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 9.34 37.15 0.35 -0.51 16 2 C 0.12 0.91 3.85 -68.34 -0.26 0.65 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 4 C 0.10 0.92 5.83 -3.63 -0.02 0.90 16 5 N -0.63 -6.63 2.98 -175.85 -0.52 -7.15 16 6 C 0.55 7.60 6.68 -13.04 -0.09 7.51 16 7 O -0.50 -9.02 11.66 5.16 0.06 -8.96 16 8 C -0.28 -3.33 9.14 -37.51 -0.34 -3.67 16 9 C 0.04 0.50 9.80 -37.20 -0.36 0.14 16 10 C -0.19 -3.44 4.54 -105.03 -0.48 -3.92 16 11 C 0.01 0.22 6.60 -39.14 -0.26 -0.04 16 12 C -0.20 -4.50 9.97 -39.46 -0.39 -4.89 16 13 C 0.17 4.27 6.66 -38.89 -0.26 4.01 16 14 O -0.17 -4.94 9.74 0.73 0.01 -4.94 16 15 C -0.39 -10.93 9.48 30.91 0.29 -10.63 16 16 H 0.09 2.42 5.18 -52.49 -0.27 2.15 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -25.10 13.67 55.48 0.76 -24.34 16 19 Si 0.94 20.41 29.55 -169.99 -5.02 15.38 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 C -0.25 -5.56 9.14 -39.47 -0.36 -5.92 16 24 C -0.04 -0.73 9.78 -39.14 -0.38 -1.11 16 25 C 0.10 0.85 6.36 -5.02 -0.03 0.82 16 26 C 0.51 5.27 7.84 -11.73 -0.09 5.18 16 27 O -0.55 -7.56 17.80 5.56 0.10 -7.46 16 28 N -0.71 -5.87 5.13 -54.72 -0.28 -6.16 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.12 1.25 7.06 -51.93 -0.37 0.88 16 34 H 0.12 1.07 6.17 -52.49 -0.32 0.75 16 35 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 36 H 0.10 1.75 7.02 -52.49 -0.37 1.38 16 37 H 0.11 2.46 8.06 -52.49 -0.42 2.03 16 38 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.13 2.77 5.62 -52.48 -0.29 2.48 16 40 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.12 0.96 5.74 -51.93 -0.30 0.66 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.40 2.87 8.62 -40.82 -0.35 2.52 16 LS Contribution 359.06 15.07 5.41 5.41 Total: -1.00 -34.90 359.06 -7.50 -42.39 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.21 Total: 6.32 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -2.79 Total: -10.50 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: -0.05 Total: -37.65 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: 0.17 Total: -21.36 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.90 -7.50 -42.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493677095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.453 kcal (2) G-P(sol) polarization free energy of solvation -34.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds