Wall clock time and date at job start Tue Mar 31 2020 05:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47043 * 2 1 4 4 N 1.46502 * 109.47197 * 120.00148 * 2 1 3 5 5 C 1.46761 * 124.34965 * 120.00489 * 4 2 1 6 6 C 1.54476 * 105.55207 * 162.96090 * 5 4 2 7 7 H 1.08997 * 110.97005 * 267.34026 * 6 5 4 8 8 N 1.46496 * 110.97150 * 143.57213 * 6 5 4 9 9 S 1.65603 * 119.99730 * 145.00319 * 8 6 5 10 10 O 1.42100 * 104.27482 * 181.07371 * 9 8 6 11 11 O 1.42100 * 104.27768 * 308.92765 * 9 8 6 12 12 C 1.81398 * 104.45335 * 64.99905 * 9 8 6 13 13 C 1.52998 * 109.47204 * 173.69599 * 12 9 8 14 14 C 1.50693 * 115.55159 * 65.19215 * 13 12 9 15 15 H 1.08007 * 119.99800 * 264.78251 * 14 13 12 16 16 C 1.37875 * 120.00027 * 84.78365 * 14 13 12 17 17 N 1.31506 * 120.00373 * 352.23992 * 16 14 13 18 18 Si 1.86805 * 120.00055 * 172.23748 * 16 14 13 19 19 H 1.48503 * 109.46966 * 90.00021 * 18 16 14 20 20 H 1.48499 * 109.47186 * 209.99950 * 18 16 14 21 21 H 1.48510 * 109.47157 * 330.00488 * 18 16 14 22 22 C 1.53001 * 117.49687 * 279.52107 * 13 12 9 23 23 C 1.53003 * 117.49775 * 210.86439 * 13 12 9 24 24 C 1.54869 * 101.65779 * 25.42928 * 6 5 4 25 25 C 1.34419 * 124.34706 * 300.02269 * 4 2 1 26 26 O 1.21280 * 124.94258 * 0.37022 * 25 4 2 27 27 H 1.09004 * 109.47460 * 59.99697 * 1 2 3 28 28 H 1.09001 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47431 * 300.00071 * 1 2 3 30 30 H 1.08999 * 109.47049 * 240.00307 * 2 1 3 31 31 H 1.08999 * 109.47276 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.46811 * 300.00108 * 3 2 1 33 33 H 1.08999 * 109.46947 * 60.00244 * 3 2 1 34 34 H 1.09004 * 110.23793 * 282.00102 * 5 4 2 35 35 H 1.08997 * 110.25012 * 43.91293 * 5 4 2 36 36 H 0.96996 * 119.99968 * 324.99850 * 8 6 5 37 37 H 1.09004 * 109.46906 * 293.69826 * 12 9 8 38 38 H 1.09000 * 109.46768 * 53.69145 * 12 9 8 39 39 H 0.96992 * 120.00723 * 185.02752 * 17 16 14 40 40 H 1.09004 * 117.50259 * 0.02562 * 22 13 12 41 41 H 1.09003 * 117.49785 * 145.02131 * 22 13 12 42 42 H 1.09003 * 117.49524 * 214.98051 * 23 13 12 43 43 H 1.09004 * 117.49754 * 359.97438 * 23 13 12 44 44 H 1.08998 * 110.46298 * 216.51740 * 24 6 5 45 45 H 1.08993 * 110.60098 * 93.93931 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8656 -1.8887 1.1727 6 6 3.4739 -1.9937 2.5888 7 1 4.4415 -1.4941 2.6357 8 7 3.5874 -3.3927 3.0083 9 16 4.8661 -3.8755 3.9433 10 8 4.6597 -5.2695 4.1263 11 8 6.0087 -3.3886 3.2528 12 6 4.6426 -2.9878 5.5093 13 6 5.6822 -3.4712 6.5225 14 6 7.1166 -3.1617 6.1798 15 1 7.7223 -3.8992 5.6741 16 6 7.6559 -1.9370 6.5118 17 7 6.8830 -0.9853 6.9875 18 14 9.4846 -1.6295 6.2861 19 1 9.7315 -1.0904 4.9245 20 1 9.9504 -0.6484 7.2988 21 1 10.2257 -2.9053 6.4552 22 6 5.3982 -4.7846 7.2540 23 6 5.2893 -3.4530 8.0011 24 6 2.4196 -1.2421 3.4386 25 6 1.7476 -0.3086 2.4562 26 8 1.0643 0.6459 2.7610 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 2.2646 -2.7714 0.9540 35 1 3.6557 -1.7775 0.4301 36 1 2.9136 -4.0361 2.7385 37 1 4.7685 -1.9181 5.3418 38 1 3.6417 -3.1797 5.8960 39 1 7.2473 -0.1016 7.1525 40 1 4.4709 -5.3046 7.0132 41 1 6.2490 -5.4247 7.4878 42 1 6.0686 -3.2175 8.7260 43 1 4.2904 -3.0963 8.2521 44 1 2.9046 -0.6751 4.2332 45 1 1.6956 -1.9410 3.8573 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582282449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:45 Heat of formation + Delta-G solvation = -83.202081 kcal Electronic energy + Delta-G solvation = -27537.305313 eV Core-core repulsion = 23682.736485 eV Total energy + Delta-G solvation = -3854.568828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.71572 -36.96071 -36.79147 -36.33363 -35.85505 -35.18498 -32.85984 -32.07722 -29.24025 -28.21852 -27.40143 -27.23755 -25.48679 -22.65228 -21.97729 -21.24545 -19.89819 -18.98612 -18.90473 -17.32054 -16.95833 -16.54708 -16.23530 -15.91312 -15.18829 -14.99127 -14.69733 -14.40284 -14.19382 -13.92687 -13.85021 -13.78365 -13.62522 -13.15614 -12.88052 -12.53627 -12.25970 -12.16023 -12.00682 -11.87817 -11.49873 -11.47267 -11.44287 -11.39228 -11.25544 -11.20700 -11.06151 -10.96566 -10.62423 -10.49731 -10.18319 -10.00888 -9.70008 -9.32414 -8.99131 -8.89620 -8.59578 -8.14591 -6.17161 -4.28125 0.93443 2.51953 2.75531 3.26229 3.28742 3.34706 3.39411 4.21445 4.25611 4.34381 4.39284 4.65697 4.75576 4.77262 4.86054 4.93816 4.98631 5.10771 5.16650 5.25498 5.28445 5.37539 5.40132 5.46407 5.57055 5.65551 5.68311 5.76412 5.91341 5.97586 6.04827 6.05447 6.21712 6.32891 6.46022 6.56758 6.69044 6.94519 6.97826 7.06019 7.20486 7.36321 7.77159 8.09046 8.16639 8.77539 9.43517 10.90294 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014964 B = 0.003790 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.709907 B = 7386.152536 C = 7966.219560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.152 3.848 3 C -0.169 4.169 4 N -0.618 5.618 5 C 0.100 3.900 6 C 0.141 3.859 7 H 0.121 0.879 8 N -1.121 6.121 9 S 2.603 3.397 10 O -0.970 6.970 11 O -0.947 6.947 12 C -0.552 4.552 13 C 0.043 3.957 14 C -0.518 4.518 15 H 0.068 0.932 16 C 0.083 3.917 17 N -0.873 5.873 18 Si 0.890 3.110 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.270 1.270 22 C -0.208 4.208 23 C -0.140 4.140 24 C -0.182 4.182 25 C 0.526 3.474 26 O -0.527 6.527 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.412 0.588 37 H 0.134 0.866 38 H 0.101 0.899 39 H 0.264 0.736 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.114 0.886 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.570 0.454 -12.231 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.050 3.950 3 C -0.227 4.227 4 N -0.353 5.353 5 C -0.025 4.025 6 C 0.032 3.968 7 H 0.139 0.861 8 N -0.875 5.875 9 S 2.701 3.299 10 O -0.960 6.960 11 O -0.937 6.937 12 C -0.686 4.686 13 C 0.041 3.959 14 C -0.555 4.555 15 H 0.086 0.914 16 C -0.122 4.122 17 N -0.508 5.508 18 Si 0.717 3.283 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.194 1.194 22 C -0.245 4.245 23 C -0.180 4.180 24 C -0.224 4.224 25 C 0.313 3.687 26 O -0.404 6.404 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.245 0.755 37 H 0.152 0.848 38 H 0.120 0.880 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.132 0.868 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.121 0.686 -12.282 16.582 hybrid contribution 0.212 0.463 0.161 0.534 sum -10.909 1.149 -12.121 16.347 Atomic orbital electron populations 1.22184 0.94746 1.02297 1.03308 1.20949 0.94414 0.93221 0.86440 1.22200 1.01582 0.95689 1.03279 1.48480 1.51579 1.28992 1.06282 1.22376 0.94286 0.87833 0.97972 1.21592 1.00070 0.82398 0.92744 0.86092 1.56090 1.46385 1.15279 1.69774 1.05334 0.72885 0.74867 0.76832 1.93519 1.85172 1.30299 1.87049 1.93548 1.47288 1.81677 1.71171 1.30006 1.06085 1.14456 1.18021 1.18273 0.92808 0.95088 0.89781 1.20513 0.93463 1.01173 1.40324 0.91369 1.24940 0.98117 0.95859 0.93287 1.69960 1.35728 1.02335 1.42826 0.86599 0.85106 0.78405 0.78183 1.20049 1.21065 1.19430 1.23203 1.01502 0.91476 1.08366 1.22558 0.99978 0.98623 0.96798 1.23115 1.00137 0.99862 0.99300 1.20754 0.79876 0.84483 0.83541 1.90691 1.39454 1.28791 1.81419 0.91550 0.92556 0.90912 0.89417 0.92214 0.91555 0.90889 0.90364 0.89328 0.75515 0.84754 0.88050 0.92659 0.90671 0.89527 0.89576 0.91471 0.86770 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 9.20 37.16 0.34 -1.11 16 2 C 0.15 1.35 3.47 -67.93 -0.24 1.11 16 3 C -0.17 -1.58 9.20 37.16 0.34 -1.24 16 4 N -0.62 -6.43 2.83 -164.85 -0.47 -6.90 16 5 C 0.10 0.91 7.03 -3.13 -0.02 0.89 16 6 C 0.14 1.63 3.73 -66.17 -0.25 1.38 16 7 H 0.12 1.53 7.58 -51.93 -0.39 1.14 16 8 N -1.12 -13.89 5.46 -3.40 -0.02 -13.91 16 9 S 2.60 47.63 5.17 -107.50 -0.56 47.07 16 10 O -0.97 -19.71 18.08 -57.54 -1.04 -20.75 16 11 O -0.95 -20.74 17.13 -57.54 -0.99 -21.73 16 12 C -0.55 -10.69 5.93 37.16 0.22 -10.47 16 13 C 0.04 1.00 1.32 -155.66 -0.21 0.79 16 14 C -0.52 -13.67 8.19 -34.44 -0.28 -13.95 16 15 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 16 C 0.08 2.20 5.38 -17.82 -0.10 2.11 16 17 N -0.87 -23.32 12.98 55.43 0.72 -22.60 16 18 Si 0.89 20.87 29.55 -169.99 -5.02 15.85 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 C -0.21 -4.40 9.96 -26.69 -0.27 -4.67 16 23 C -0.14 -3.09 9.49 -26.69 -0.25 -3.34 16 24 C -0.18 -2.11 6.60 -26.61 -0.18 -2.28 16 25 C 0.53 6.81 7.41 -10.86 -0.08 6.73 16 26 O -0.53 -8.50 15.12 5.56 0.08 -8.41 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.81 6.77 -51.93 -0.35 0.46 16 30 H 0.09 0.60 8.07 -51.93 -0.42 0.18 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.86 6.80 -51.93 -0.35 0.51 16 34 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.41 3.98 8.66 -34.47 -0.30 3.68 16 37 H 0.13 2.68 8.14 -51.92 -0.42 2.26 16 38 H 0.10 1.63 8.09 -51.92 -0.42 1.21 16 39 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 40 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 41 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 42 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.11 1.13 8.09 -51.93 -0.42 0.71 16 LS Contribution 382.19 15.07 5.76 5.76 Total: -1.00 -33.38 382.19 -9.75 -43.13 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.26 Total: 6.53 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: -0.96 Total: -24.05 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.23 Total: -43.40 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -1.94 Total: -50.89 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 47.63 SS G_CDS: -0.56 Total: 47.07 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.38 -9.75 -43.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582282449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.072 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds