Wall clock time and date at job start Tue Mar 31 2020 04:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99587 * 2 1 4 4 H 1.48500 * 109.47185 * 269.99416 * 3 2 1 5 5 H 1.48493 * 109.47693 * 29.99881 * 3 2 1 6 6 H 1.48505 * 109.47105 * 150.00136 * 3 2 1 7 7 C 1.37874 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99914 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47014 * 179.97438 * 9 7 2 11 11 S 1.81395 * 109.47131 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.54706 * 68.37506 * 11 10 9 13 13 O 1.42105 * 110.54340 * 291.62405 * 11 10 9 14 14 N 1.65603 * 104.45353 * 180.02562 * 11 10 9 15 15 C 1.47026 * 125.64288 * 269.97887 * 14 11 10 16 16 C 1.54321 * 107.26791 * 181.07493 * 15 14 11 17 17 C 1.55448 * 102.96961 * 22.19024 * 16 15 14 18 18 H 1.09004 * 111.00873 * 82.52495 * 17 16 15 19 19 C 1.53000 * 111.11787 * 206.45980 * 17 16 15 20 20 N 1.46500 * 109.47614 * 287.10791 * 19 17 16 21 21 C 1.46755 * 124.35344 * 89.99757 * 20 19 17 22 22 C 1.54481 * 105.47769 * 197.02119 * 21 20 19 23 23 C 1.54631 * 101.76143 * 334.58188 * 22 21 20 24 24 C 1.34424 * 124.34581 * 269.70396 * 20 19 17 25 25 O 1.21281 * 124.94050 * 359.56861 * 24 20 19 26 26 C 1.47419 * 125.65136 * 89.99439 * 14 11 10 27 27 H 0.96997 * 120.00373 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47346 * 60.00305 * 9 7 2 29 29 H 1.09002 * 109.47226 * 299.99413 * 9 7 2 30 30 H 1.09005 * 109.47119 * 60.00227 * 10 9 7 31 31 H 1.08992 * 109.47286 * 299.99968 * 10 9 7 32 32 H 1.08998 * 109.88266 * 300.48868 * 15 14 11 33 33 H 1.09000 * 109.88221 * 61.65685 * 15 14 11 34 34 H 1.08998 * 110.71927 * 140.55469 * 16 15 14 35 35 H 1.08998 * 110.72073 * 263.64892 * 16 15 14 36 36 H 1.09000 * 109.46992 * 47.10533 * 19 17 16 37 37 H 1.08997 * 109.46670 * 167.10273 * 19 17 16 38 38 H 1.09004 * 110.24666 * 316.02051 * 21 20 19 39 39 H 1.08999 * 110.24987 * 78.01641 * 21 20 19 40 40 H 1.08991 * 110.97238 * 92.69912 * 22 21 20 41 41 H 1.08999 * 110.97129 * 216.43180 * 22 21 20 42 42 H 1.09002 * 110.48723 * 143.47499 * 23 22 21 43 43 H 1.09000 * 110.48740 * 265.98754 * 23 22 21 44 44 H 1.09002 * 110.36926 * 274.69587 * 26 14 11 45 45 H 1.08995 * 110.36556 * 36.90871 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 16 1.3385 -5.2330 0.0013 12 8 0.6640 -5.4201 -1.2354 13 8 0.6649 -5.4193 1.2386 14 7 2.5206 -6.3927 0.0020 15 6 3.1320 -6.9936 -1.1925 16 6 4.1581 -8.0384 -0.7056 17 6 3.6623 -8.3717 0.7295 18 1 2.8606 -9.1098 0.7044 19 6 4.8159 -8.8483 1.6144 20 7 5.2100 -10.2019 1.2162 21 6 6.2282 -10.5039 0.2034 22 6 5.9958 -11.9802 -0.1875 23 6 5.3166 -12.5398 1.0840 24 6 4.6892 -11.3271 1.7356 25 8 3.8384 -11.3645 2.5991 26 6 3.1340 -6.9937 1.2002 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8904 30 1 2.8720 -3.6042 0.8906 31 1 2.8720 -3.6043 -0.8894 32 1 2.3658 -7.4799 -1.7963 33 1 3.6355 -6.2244 -1.7781 34 1 4.1340 -8.9261 -1.3376 35 1 5.1607 -7.6117 -0.6806 36 1 5.6647 -8.1742 1.4991 37 1 4.4959 -8.8546 2.6563 38 1 6.0988 -9.8587 -0.6656 39 1 7.2264 -10.3773 0.6226 40 1 5.3329 -12.0559 -1.0493 41 1 6.9418 -12.4864 -0.3799 42 1 4.5533 -13.2712 0.8183 43 1 6.0574 -12.9865 1.7471 44 1 3.9566 -6.3737 1.5569 45 1 2.3882 -7.1212 1.9847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595368921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:41 Heat of formation + Delta-G solvation = -112.615161 kcal Electronic energy + Delta-G solvation = -26439.062264 eV Core-core repulsion = 22583.217990 eV Total energy + Delta-G solvation = -3855.844275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.78422 -38.64439 -36.67542 -36.60399 -35.43457 -33.90305 -33.81948 -31.16655 -30.78185 -29.51633 -27.95765 -25.86462 -25.54411 -22.66497 -22.20530 -21.44760 -21.03298 -19.64227 -18.57249 -17.59419 -17.19207 -17.06237 -16.50085 -15.98763 -15.70212 -15.46956 -15.07491 -14.58591 -14.36178 -14.15335 -13.98111 -13.67833 -13.58380 -13.30545 -13.29106 -13.05987 -12.85609 -12.52042 -12.34713 -11.94271 -11.76366 -11.72966 -11.57568 -11.51149 -11.39954 -11.30600 -11.09822 -11.07873 -10.96990 -10.87526 -10.42985 -10.38628 -10.08667 -9.77377 -9.33315 -9.08414 -8.74978 -8.51347 -6.13190 -4.18966 0.72210 2.26982 2.62157 3.04850 3.25116 3.31325 3.34020 3.93198 4.01756 4.19555 4.28066 4.33018 4.34080 4.39169 4.51735 4.62501 4.72726 4.93331 5.00420 5.02204 5.11518 5.17400 5.21886 5.22825 5.33224 5.37130 5.40262 5.48146 5.50343 5.54608 5.62345 5.68809 5.75326 5.85360 5.95486 6.16000 6.22506 6.47675 6.47988 6.76789 7.29103 7.35227 7.79535 7.85615 8.16553 8.84352 9.45731 10.97856 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.025404 B = 0.002385 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.908567 B =11738.005677 C =12016.285845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.588 4.588 11 S 2.605 3.395 12 O -0.962 6.962 13 O -0.961 6.961 14 N -1.019 6.019 15 C 0.121 3.879 16 C -0.121 4.121 17 C -0.116 4.116 18 H 0.089 0.911 19 C 0.135 3.865 20 N -0.617 5.617 21 C 0.099 3.901 22 C -0.133 4.133 23 C -0.156 4.156 24 C 0.514 3.486 25 O -0.529 6.529 26 C 0.123 3.877 27 H 0.265 0.735 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.068 0.932 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.085 -23.721 -1.665 29.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.721 4.721 11 S 2.705 3.295 12 O -0.952 6.952 13 O -0.951 6.951 14 N -0.855 5.855 15 C -0.005 4.005 16 C -0.160 4.160 17 C -0.137 4.137 18 H 0.107 0.893 19 C 0.013 3.987 20 N -0.352 5.352 21 C -0.024 4.024 22 C -0.170 4.170 23 C -0.196 4.196 24 C 0.302 3.698 25 O -0.405 6.405 26 C -0.003 4.003 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.086 0.914 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.442 -23.697 -1.187 28.309 hybrid contribution 1.099 1.354 -0.135 1.749 sum 16.541 -22.342 -1.322 27.830 Atomic orbital electron populations 1.69951 1.06120 1.27224 1.49516 1.25076 0.94985 0.99563 0.94915 0.86459 0.79690 0.82842 0.78220 1.20465 1.20984 1.19779 1.20990 0.93032 0.89740 1.52186 0.92066 1.18973 0.92727 0.90573 0.98887 1.30483 1.13701 1.17958 1.09966 1.05322 0.74143 0.75980 0.74044 1.93533 1.70960 1.85230 1.45505 1.93538 1.70972 1.85218 1.45418 1.58888 1.58431 1.56031 1.12155 1.21642 0.95666 0.95814 0.87378 1.22772 0.98745 0.98544 0.95953 1.22860 0.98314 0.97275 0.95235 0.89287 1.21343 0.96808 0.81329 0.99229 1.48267 1.40009 1.06106 1.40775 1.22154 0.91599 0.96819 0.91862 1.22598 1.02192 0.94633 0.97613 1.22334 1.02044 0.97263 0.97986 1.20956 0.81330 0.85797 0.81763 1.90760 1.31587 1.86700 1.31490 1.21905 0.97914 0.92407 0.88068 0.92502 0.94860 0.94813 0.86271 0.86322 0.91194 0.91543 0.90497 0.90543 0.89678 0.89327 0.89955 0.91001 0.89877 0.89149 0.88063 0.87920 0.91373 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 10 C -0.59 -11.35 6.12 37.16 0.23 -11.13 16 11 S 2.61 48.34 5.65 -107.50 -0.61 47.74 16 12 O -0.96 -20.49 17.60 -57.54 -1.01 -21.51 16 13 O -0.96 -20.60 17.28 -57.54 -0.99 -21.59 16 14 N -1.02 -14.11 3.62 -111.43 -0.40 -14.51 16 15 C 0.12 1.33 6.90 -3.06 -0.02 1.31 16 16 C -0.12 -0.93 5.36 -24.74 -0.13 -1.07 16 17 C -0.12 -1.07 3.27 -88.31 -0.29 -1.36 16 18 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 19 C 0.14 1.04 5.40 -4.04 -0.02 1.01 16 20 N -0.62 -4.51 2.89 -172.42 -0.50 -5.01 16 21 C 0.10 0.38 7.23 -3.13 -0.02 0.36 16 22 C -0.13 -0.39 7.18 -25.10 -0.18 -0.57 16 23 C -0.16 -0.82 6.86 -26.74 -0.18 -1.00 16 24 C 0.51 4.92 8.02 -10.86 -0.09 4.83 16 25 O -0.53 -7.62 17.59 5.56 0.10 -7.52 16 26 C 0.12 1.41 6.53 -2.53 -0.02 1.40 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 31 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.49 7.87 -51.93 -0.41 0.09 16 35 H 0.08 0.45 7.93 -51.93 -0.41 0.04 16 36 H 0.08 0.47 7.98 -51.93 -0.41 0.05 16 37 H 0.09 0.79 7.92 -51.93 -0.41 0.38 16 38 H 0.08 0.25 6.91 -51.93 -0.36 -0.11 16 39 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.63 8.04 -51.93 -0.42 0.22 16 45 H 0.09 1.10 7.66 -51.93 -0.40 0.70 16 LS Contribution 379.24 15.07 5.72 5.72 Total: -1.00 -38.19 379.24 -10.70 -48.88 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -7.43 Total: -3.66 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -1.28 Total: -18.86 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -0.16 Total: -45.40 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -1.91 Total: -50.62 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 48.34 SS G_CDS: -0.61 Total: 47.74 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.19 -10.70 -48.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595368921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.732 kcal (2) G-P(sol) polarization free energy of solvation -38.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds