Wall clock time and date at job start Tue Mar 31 2020 04:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99587 * 2 1 4 4 H 1.48500 * 109.47185 * 269.99416 * 3 2 1 5 5 H 1.48493 * 109.47693 * 29.99881 * 3 2 1 6 6 H 1.48505 * 109.47105 * 150.00136 * 3 2 1 7 7 C 1.37874 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99914 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47014 * 179.97438 * 9 7 2 11 11 S 1.81395 * 109.47131 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.54706 * 68.37506 * 11 10 9 13 13 O 1.42105 * 110.54340 * 291.62405 * 11 10 9 14 14 N 1.65603 * 104.45353 * 180.02562 * 11 10 9 15 15 C 1.47026 * 125.64288 * 269.97887 * 14 11 10 16 16 C 1.54321 * 107.26791 * 181.07493 * 15 14 11 17 17 C 1.55448 * 102.96961 * 22.19024 * 16 15 14 18 18 H 1.09004 * 111.00873 * 82.52495 * 17 16 15 19 19 C 1.53000 * 111.11787 * 206.45980 * 17 16 15 20 20 N 1.46500 * 109.47614 * 287.10791 * 19 17 16 21 21 C 1.46755 * 124.35344 * 89.99757 * 20 19 17 22 22 C 1.54481 * 105.47769 * 197.02119 * 21 20 19 23 23 C 1.54631 * 101.76143 * 334.58188 * 22 21 20 24 24 C 1.34424 * 124.34581 * 269.70396 * 20 19 17 25 25 O 1.21281 * 124.94050 * 359.56861 * 24 20 19 26 26 C 1.47419 * 125.65136 * 89.99439 * 14 11 10 27 27 H 0.96997 * 120.00373 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47346 * 60.00305 * 9 7 2 29 29 H 1.09002 * 109.47226 * 299.99413 * 9 7 2 30 30 H 1.09005 * 109.47119 * 60.00227 * 10 9 7 31 31 H 1.08992 * 109.47286 * 299.99968 * 10 9 7 32 32 H 1.08998 * 109.88266 * 300.48868 * 15 14 11 33 33 H 1.09000 * 109.88221 * 61.65685 * 15 14 11 34 34 H 1.08998 * 110.71927 * 140.55469 * 16 15 14 35 35 H 1.08998 * 110.72073 * 263.64892 * 16 15 14 36 36 H 1.09000 * 109.46992 * 47.10533 * 19 17 16 37 37 H 1.08997 * 109.46670 * 167.10273 * 19 17 16 38 38 H 1.09004 * 110.24666 * 316.02051 * 21 20 19 39 39 H 1.08999 * 110.24987 * 78.01641 * 21 20 19 40 40 H 1.08991 * 110.97238 * 92.69912 * 22 21 20 41 41 H 1.08999 * 110.97129 * 216.43180 * 22 21 20 42 42 H 1.09002 * 110.48723 * 143.47499 * 23 22 21 43 43 H 1.09000 * 110.48740 * 265.98754 * 23 22 21 44 44 H 1.09002 * 110.36926 * 274.69587 * 26 14 11 45 45 H 1.08995 * 110.36556 * 36.90871 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 16 1.3385 -5.2330 0.0013 12 8 0.6640 -5.4201 -1.2354 13 8 0.6649 -5.4193 1.2386 14 7 2.5206 -6.3927 0.0020 15 6 3.1320 -6.9936 -1.1925 16 6 4.1581 -8.0384 -0.7056 17 6 3.6623 -8.3717 0.7295 18 1 2.8606 -9.1098 0.7044 19 6 4.8159 -8.8483 1.6144 20 7 5.2100 -10.2019 1.2162 21 6 6.2282 -10.5039 0.2034 22 6 5.9958 -11.9802 -0.1875 23 6 5.3166 -12.5398 1.0840 24 6 4.6892 -11.3271 1.7356 25 8 3.8384 -11.3645 2.5991 26 6 3.1340 -6.9937 1.2002 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8904 30 1 2.8720 -3.6042 0.8906 31 1 2.8720 -3.6043 -0.8894 32 1 2.3658 -7.4799 -1.7963 33 1 3.6355 -6.2244 -1.7781 34 1 4.1340 -8.9261 -1.3376 35 1 5.1607 -7.6117 -0.6806 36 1 5.6647 -8.1742 1.4991 37 1 4.4959 -8.8546 2.6563 38 1 6.0988 -9.8587 -0.6656 39 1 7.2264 -10.3773 0.6226 40 1 5.3329 -12.0559 -1.0493 41 1 6.9418 -12.4864 -0.3799 42 1 4.5533 -13.2712 0.8183 43 1 6.0574 -12.9865 1.7471 44 1 3.9566 -6.3737 1.5569 45 1 2.3882 -7.1212 1.9847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595368921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:40 Heat of formation + Delta-G solvation = -141.110431 kcal Electronic energy + Delta-G solvation = -26440.297912 eV Core-core repulsion = 22583.217990 eV Total energy + Delta-G solvation = -3857.079922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.37923 -39.51343 -38.23716 -37.37429 -37.06843 -35.91701 -34.46099 -33.14970 -31.53256 -30.29917 -28.38043 -27.62289 -26.50877 -23.84155 -23.09812 -22.60002 -21.76086 -20.33181 -19.88527 -19.14406 -18.33466 -17.89920 -17.54933 -17.12160 -17.07584 -16.55374 -16.32265 -16.19009 -15.31859 -15.08942 -14.75323 -14.70184 -14.49737 -14.38518 -14.31693 -13.97789 -13.76352 -13.71116 -13.32580 -13.26576 -13.21190 -13.01690 -12.94000 -12.81125 -12.68164 -12.31631 -12.27353 -12.16519 -12.13336 -11.85676 -11.75862 -11.69365 -11.59234 -11.18226 -10.80160 -10.66333 -9.94164 -9.64491 -8.27278 -6.41944 -0.78804 1.40311 1.42577 1.53673 1.57867 1.72508 2.11063 2.37207 2.82291 3.04215 3.06423 3.47012 3.52222 3.66236 3.74596 3.85678 3.99560 4.09706 4.12448 4.27631 4.31370 4.33530 4.42439 4.54226 4.63984 4.70889 4.72568 4.76128 4.80567 4.90174 4.93586 4.99386 5.08590 5.09718 5.16184 5.23142 5.24859 5.29398 5.32349 5.47400 5.66498 5.66908 6.03737 6.20586 6.71859 7.19997 7.28448 8.85122 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.025404 B = 0.002385 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.908567 B =11738.005677 C =12016.285845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.977 3.023 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.019 3.981 10 C -0.580 4.580 11 S 2.626 3.374 12 O -0.995 6.995 13 O -0.998 6.998 14 N -1.014 6.014 15 C 0.105 3.895 16 C -0.105 4.105 17 C -0.108 4.108 18 H 0.059 0.941 19 C 0.136 3.864 20 N -0.614 5.614 21 C 0.092 3.908 22 C -0.122 4.122 23 C -0.152 4.152 24 C 0.496 3.504 25 O -0.594 6.594 26 C 0.113 3.887 27 H 0.267 0.733 28 H 0.005 0.995 29 H 0.004 0.996 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.099 0.901 43 H 0.116 0.884 44 H 0.100 0.900 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.640 -24.067 -2.986 32.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.577 4.577 8 H 0.096 0.904 9 C -0.020 4.020 10 C -0.713 4.713 11 S 2.726 3.274 12 O -0.985 6.985 13 O -0.988 6.988 14 N -0.854 5.854 15 C -0.019 4.019 16 C -0.144 4.144 17 C -0.129 4.129 18 H 0.078 0.922 19 C 0.013 3.987 20 N -0.346 5.346 21 C -0.029 4.029 22 C -0.160 4.160 23 C -0.192 4.192 24 C 0.286 3.714 25 O -0.475 6.475 26 C -0.013 4.013 27 H 0.076 0.924 28 H 0.024 0.976 29 H 0.022 0.978 30 H 0.161 0.839 31 H 0.163 0.837 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.135 0.865 42 H 0.118 0.882 43 H 0.134 0.866 44 H 0.118 0.882 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.037 -24.039 -2.546 31.399 hybrid contribution -0.312 1.371 0.271 1.432 sum 19.726 -22.668 -2.275 30.135 Atomic orbital electron populations 1.70108 1.08181 1.28377 1.50858 1.26170 0.95881 1.04065 0.94358 0.85270 0.78623 0.77413 0.78687 1.19473 1.20963 1.17976 1.21504 0.94037 0.90590 1.51531 0.90369 1.18838 0.93663 0.93237 0.96239 1.30332 1.12648 1.15876 1.12424 1.04287 0.74358 0.76202 0.72515 1.93481 1.72520 1.85815 1.46691 1.93486 1.72663 1.85835 1.46844 1.58432 1.57963 1.54581 1.14394 1.22023 0.96286 0.97221 0.86380 1.22798 0.99039 0.98268 0.94278 1.22727 0.98153 0.95069 0.96955 0.92240 1.21329 0.97290 0.82353 0.97714 1.48432 1.39945 1.05367 1.40851 1.22487 0.91277 0.97655 0.91497 1.22647 1.03223 0.93997 0.96117 1.22371 1.02233 0.95439 0.99182 1.21807 0.80646 0.87811 0.81137 1.90716 1.34561 1.87793 1.34459 1.22194 0.98145 0.94274 0.86662 0.92384 0.97632 0.97750 0.83905 0.83730 0.92495 0.89633 0.88627 0.87166 0.86227 0.91457 0.88200 0.89058 0.89564 0.86462 0.88219 0.86553 0.88209 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.48 13.29 21.45 0.28 -57.19 16 2 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 3 Si 0.98 43.16 29.54 68.60 2.03 45.19 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.54 -29.82 9.11 25.60 0.23 -29.58 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.93 16 9 C 0.02 1.02 4.98 29.85 0.15 1.17 16 10 C -0.58 -22.07 6.12 71.98 0.44 -21.63 16 11 S 2.63 99.33 5.65 -56.49 -0.32 99.01 16 12 O -0.99 -43.63 17.60 -127.65 -2.25 -45.87 16 13 O -1.00 -44.67 17.28 -127.65 -2.21 -46.88 16 14 N -1.01 -27.15 3.62 -506.45 -1.83 -28.98 16 15 C 0.11 2.09 6.90 86.73 0.60 2.69 16 16 C -0.11 -1.22 5.36 31.88 0.17 -1.05 16 17 C -0.11 -1.83 3.27 -9.30 -0.03 -1.86 16 18 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 19 C 0.14 1.80 5.40 86.38 0.47 2.27 16 20 N -0.61 -7.61 2.89 -817.99 -2.36 -9.97 16 21 C 0.09 0.31 7.23 86.83 0.63 0.94 16 22 C -0.12 -0.25 7.18 31.65 0.23 -0.02 16 23 C -0.15 -1.33 6.86 30.59 0.21 -1.12 16 24 C 0.50 9.32 8.02 87.90 0.71 10.03 16 25 O -0.59 -18.13 17.59 -3.03 -0.05 -18.18 16 26 C 0.11 2.47 6.53 86.85 0.57 3.03 16 27 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 28 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.14 4.71 8.14 -2.39 -0.02 4.69 16 31 H 0.14 4.70 8.14 -2.39 -0.02 4.69 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 0.82 7.87 -2.39 -0.02 0.80 16 35 H 0.11 0.62 7.93 -2.39 -0.02 0.60 16 36 H 0.12 0.78 7.98 -2.39 -0.02 0.76 16 37 H 0.07 1.20 7.92 -2.39 -0.02 1.18 16 38 H 0.10 0.05 6.91 -2.39 -0.02 0.03 16 39 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.12 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.10 1.57 8.04 -2.39 -0.02 1.55 16 45 H 0.06 1.67 7.66 -2.39 -0.02 1.65 16 Total: -1.00 -88.94 379.24 -0.92 -89.86 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.96 Total: 8.06 kcal Atomic # 6 Polarization: -39.88 SS G_CDS: 4.83 Total: -35.05 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -3.91 Total: -96.14 kcal Atomic # 8 Polarization: -106.43 SS G_CDS: -4.51 Total: -110.93 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: 99.33 SS G_CDS: -0.32 Total: 99.01 kcal Total: -88.94 -0.92 -89.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595368921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.253 kcal (2) G-P(sol) polarization free energy of solvation -88.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds