Wall clock time and date at job start Tue Mar 31 2020 06:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.36477 * 2 1 4 4 C 1.54161 * 110.31893 * 237.82589 * 2 1 3 5 5 H 1.09003 * 109.53800 * 149.21998 * 4 2 1 6 6 N 1.46506 * 109.64715 * 28.86285 * 4 2 1 7 7 C 1.34778 * 119.99776 * 81.16026 * 6 4 2 8 8 O 1.21585 * 120.00498 * 5.25796 * 7 6 4 9 9 N 1.34782 * 119.99373 * 185.25493 * 7 6 4 10 10 C 1.46918 * 120.63179 * 5.04799 * 9 7 6 11 11 C 1.52762 * 109.00929 * 233.57907 * 10 9 7 12 12 C 1.53038 * 109.38657 * 305.59725 * 11 10 9 13 13 C 1.50702 * 109.45920 * 181.25897 * 12 11 10 14 14 H 1.08006 * 119.99701 * 239.92277 * 13 12 11 15 15 C 1.37872 * 120.00137 * 59.93119 * 13 12 11 16 16 N 1.31514 * 120.00211 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99882 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47079 * 89.99665 * 17 15 13 19 19 H 1.48501 * 109.47322 * 209.99365 * 17 15 13 20 20 H 1.48496 * 109.47435 * 330.00064 * 17 15 13 21 21 C 1.53035 * 109.54035 * 61.23211 * 12 11 10 22 22 C 1.46926 * 120.62410 * 185.32799 * 9 7 6 23 23 C 1.53871 * 108.70865 * 269.00815 * 4 2 1 24 24 C 1.55048 * 106.62264 * 312.81952 * 23 4 2 25 25 S 1.82922 * 110.31776 * 122.16886 * 2 1 3 26 26 O 1.42099 * 109.35525 * 3.37638 * 25 2 1 27 27 O 1.42103 * 109.47486 * 230.21169 * 25 2 1 28 28 H 1.08996 * 109.47419 * 177.08839 * 1 2 3 29 29 H 1.09005 * 109.46877 * 297.08615 * 1 2 3 30 30 H 1.08997 * 109.47091 * 57.08305 * 1 2 3 31 31 H 0.96994 * 119.99606 * 261.16552 * 6 4 2 32 32 H 1.09001 * 109.59051 * 353.42329 * 10 9 7 33 33 H 1.09008 * 109.58245 * 113.84652 * 10 9 7 34 34 H 1.08996 * 109.56691 * 185.55030 * 11 10 9 35 35 H 1.09007 * 109.38089 * 65.52014 * 11 10 9 36 36 H 1.09011 * 109.45504 * 301.21165 * 12 11 10 37 37 H 0.97000 * 120.00068 * 180.02562 * 16 15 13 38 38 H 1.09004 * 109.50082 * 178.68557 * 21 12 11 39 39 H 1.09006 * 109.52276 * 58.60655 * 21 12 11 40 40 H 1.09006 * 109.58897 * 246.15536 * 22 9 7 41 41 H 1.09002 * 109.58962 * 6.43819 * 22 9 7 42 42 H 1.09002 * 110.02636 * 72.10822 * 23 4 2 43 43 H 1.08994 * 110.03020 * 193.52906 * 23 4 2 44 44 H 1.09008 * 110.78848 * 160.69799 * 24 23 4 45 45 H 1.08999 * 110.79126 * 284.16157 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0653 -0.7698 -1.2237 5 1 3.0196 -0.3437 -1.5336 6 7 1.1032 -0.6755 -2.3245 7 6 1.0746 0.4251 -3.1020 8 8 1.9081 1.2974 -2.9518 9 7 0.1219 0.5585 -4.0460 10 6 -0.9562 -0.4322 -4.1669 11 6 -1.0041 -0.9424 -5.6060 12 6 -1.1316 0.2457 -6.5622 13 6 -1.2101 -0.2576 -7.9805 14 1 -0.4647 0.0427 -8.7021 15 6 -2.2336 -1.1011 -8.3570 16 7 -3.1411 -1.4670 -7.4783 17 14 -2.3313 -1.7243 -10.1153 18 1 -1.5734 -2.9959 -10.2326 19 1 -3.7518 -1.9594 -10.4790 20 1 -1.7464 -0.7131 -11.0321 21 6 0.0884 1.1573 -6.4113 22 6 0.1455 1.6943 -4.9778 23 6 2.2604 -2.2450 -0.8321 24 6 3.0115 -2.2483 0.5243 25 16 2.1652 -0.9133 1.4521 26 8 1.0736 -1.4627 2.1772 27 8 3.1337 -0.1199 2.1243 28 1 -0.3634 -1.0263 -0.0522 29 1 -0.3633 0.4680 0.9150 30 1 -0.3633 0.5584 -0.8627 31 1 0.4868 -1.4050 -2.4937 32 1 -0.7640 -1.2657 -3.4913 33 1 -1.9095 0.0326 -3.9150 34 1 -1.8618 -1.6034 -5.7306 35 1 -0.0877 -1.4900 -5.8263 36 1 -2.0357 0.8068 -6.3255 37 1 -3.8610 -2.0608 -7.7431 38 1 0.0082 1.9908 -7.1092 39 1 0.9950 0.5907 -6.6240 40 1 -0.7161 2.3361 -4.7934 41 1 1.0632 2.2649 -4.8353 42 1 1.2920 -2.7336 -0.7237 43 1 2.8546 -2.7568 -1.5890 44 1 2.8924 -3.2065 1.0302 45 1 4.0663 -2.0126 0.3830 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602373371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:00 Heat of formation + Delta-G solvation = -96.000425 kcal Electronic energy + Delta-G solvation = -27480.777239 eV Core-core repulsion = 23625.653433 eV Total energy + Delta-G solvation = -3855.123806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.38189 -38.03958 -37.30513 -36.55416 -36.27432 -33.72369 -33.01165 -32.13105 -30.96141 -30.11095 -26.96198 -25.90767 -24.37659 -23.11534 -22.43938 -21.27498 -20.26575 -19.16195 -18.83952 -17.90444 -17.15185 -16.93607 -16.35904 -16.26047 -15.83237 -15.35016 -14.76630 -14.61920 -14.49179 -14.17562 -13.79578 -13.44856 -13.31811 -13.16243 -12.86428 -12.75535 -12.57083 -12.50335 -12.37675 -12.30827 -12.23958 -11.73764 -11.66004 -11.46179 -11.34501 -10.99651 -10.95449 -10.70199 -10.50374 -10.44706 -10.23870 -9.88210 -9.64035 -9.27062 -9.19509 -9.00478 -8.44726 -8.02366 -6.09875 -4.15906 -0.29330 2.17874 2.76862 3.21660 3.23273 3.30915 3.34256 3.40978 3.68610 3.93873 4.04797 4.15542 4.26741 4.35357 4.42019 4.53812 4.90950 5.12046 5.16431 5.19434 5.31351 5.41870 5.45406 5.48327 5.64883 5.70784 5.85471 5.93129 5.98860 6.09100 6.18460 6.38135 6.40521 6.59046 6.73974 6.90191 7.03467 7.12265 7.31885 7.59755 7.84437 7.95947 8.15359 8.33367 8.77954 8.87582 9.49614 10.95559 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.026202 B = 0.002730 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.367796 B =10255.626940 C =10621.510454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.569 4.569 3 H 0.149 0.851 4 C 0.177 3.823 5 H 0.108 0.892 6 N -0.738 5.738 7 C 0.708 3.292 8 O -0.600 6.600 9 N -0.616 5.616 10 C 0.110 3.890 11 C -0.125 4.125 12 C 0.050 3.950 13 C -0.512 4.512 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.124 4.124 22 C 0.129 3.871 23 C -0.129 4.129 24 C -0.586 4.586 25 S 2.386 3.614 26 O -0.931 6.931 27 O -0.938 6.938 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.401 0.599 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.038 0.962 36 H 0.028 0.972 37 H 0.260 0.740 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.141 0.859 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.197 -2.703 15.044 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.680 4.680 3 H 0.167 0.833 4 C 0.069 3.931 5 H 0.126 0.874 6 N -0.396 5.396 7 C 0.410 3.590 8 O -0.480 6.480 9 N -0.352 5.352 10 C -0.013 4.013 11 C -0.164 4.164 12 C 0.031 3.969 13 C -0.550 4.550 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.163 4.163 22 C 0.007 3.993 23 C -0.168 4.168 24 C -0.715 4.715 25 S 2.569 3.431 26 O -0.928 6.928 27 O -0.935 6.935 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.239 0.761 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.125 0.875 44 H 0.160 0.840 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.521 -1.977 16.122 18.342 hybrid contribution -0.333 -0.971 -1.942 2.197 sum 8.188 -2.948 14.179 16.637 Atomic orbital electron populations 1.21348 0.89061 1.03669 1.03629 1.30805 1.07705 1.13524 1.15979 0.83313 1.21080 0.94062 0.93176 0.84823 0.87382 1.45153 1.40693 1.20472 1.33325 1.15793 0.81852 0.82114 0.79247 1.90862 1.41678 1.42312 1.73127 1.47442 1.26690 1.27762 1.33278 1.21838 0.89211 0.89884 1.00350 1.21961 1.02624 1.01407 0.90385 1.18611 0.92131 0.91545 0.94581 1.21208 1.10339 1.28272 0.95184 0.92712 1.24953 0.95511 0.96249 0.97238 1.69824 1.14171 1.35397 1.33714 0.86616 0.77171 0.79184 0.85153 1.20767 1.21241 1.19957 1.22032 1.01035 1.00074 0.93137 1.21596 1.01740 0.86844 0.89132 1.22438 1.02206 0.96131 0.95988 1.30570 1.12440 1.18996 1.09541 1.09320 0.76729 0.78670 0.78408 1.93612 1.52637 1.77919 1.68592 1.93615 1.60754 1.67827 1.71344 0.91110 0.91487 0.90363 0.76111 0.92519 0.91805 0.87746 0.94310 0.95432 0.92963 0.92074 0.93011 0.92341 0.90288 0.88754 0.87461 0.84047 0.84107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 7.87 37.16 0.29 -0.83 16 2 C -0.57 -5.16 3.68 -26.12 -0.10 -5.26 16 3 H 0.15 1.43 8.14 -51.93 -0.42 1.01 16 4 C 0.18 1.60 2.69 -66.87 -0.18 1.42 16 5 H 0.11 1.05 7.65 -51.93 -0.40 0.66 16 6 N -0.74 -8.39 3.67 -57.63 -0.21 -8.60 16 7 C 0.71 11.15 7.54 -86.91 -0.65 10.49 16 8 O -0.60 -11.21 15.49 5.29 0.08 -11.13 16 9 N -0.62 -10.12 2.98 -178.76 -0.53 -10.65 16 10 C 0.11 1.75 6.40 -3.94 -0.03 1.73 16 11 C -0.13 -2.55 5.14 -26.83 -0.14 -2.69 16 12 C 0.05 1.12 2.07 -91.73 -0.19 0.93 16 13 C -0.51 -13.13 8.56 -34.44 -0.29 -13.43 16 14 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 15 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 16 N -0.89 -23.55 11.30 55.43 0.63 -22.92 16 17 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 C -0.12 -2.42 5.30 -26.61 -0.14 -2.56 16 22 C 0.13 2.24 6.42 -3.71 -0.02 2.22 16 23 C -0.13 -0.75 5.95 -25.20 -0.15 -0.90 16 24 C -0.59 -3.00 7.31 38.24 0.28 -2.72 16 25 S 2.39 20.44 5.96 -107.50 -0.64 19.79 16 26 O -0.93 -10.59 17.27 -57.73 -1.00 -11.59 16 27 O -0.94 -11.43 18.15 -57.73 -1.05 -12.48 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.86 7.00 -51.93 -0.36 0.50 16 31 H 0.40 3.89 6.05 -40.82 -0.25 3.64 16 32 H 0.06 0.72 5.58 -51.93 -0.29 0.43 16 33 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 34 H 0.10 2.39 6.03 -51.93 -0.31 2.08 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 1.38 7.04 -51.93 -0.37 1.01 16 42 H 0.09 0.44 8.12 -51.93 -0.42 0.02 16 43 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.14 0.49 8.14 -51.92 -0.42 0.07 16 45 H 0.14 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 361.12 15.07 5.44 5.44 Total: -1.00 -33.79 361.12 -10.73 -44.52 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.01 Total: 2.47 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -1.42 Total: -10.10 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: -0.12 Total: -42.18 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -1.96 Total: -35.20 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 20.44 SS G_CDS: -0.64 Total: 19.79 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.79 -10.73 -44.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602373371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.481 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds