Wall clock time and date at job start Tue Mar 31 2020 05:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00212 * 2 1 4 4 H 1.48502 * 109.47326 * 270.00506 * 3 2 1 5 5 H 1.48506 * 109.46904 * 30.00172 * 3 2 1 6 6 H 1.48500 * 109.47210 * 149.99921 * 3 2 1 7 7 C 1.38813 * 119.99456 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99695 * 163.07578 * 7 2 1 9 9 N 1.36931 * 120.00294 * 343.06276 * 7 2 1 10 10 C 1.46925 * 120.63425 * 331.85646 * 9 7 2 11 11 C 1.53190 * 108.77726 * 233.58024 * 10 9 7 12 12 C 1.53041 * 109.31054 * 305.36603 * 11 10 9 13 13 N 1.46506 * 109.45650 * 181.38578 * 12 11 10 14 14 C 1.34773 * 120.00126 * 154.97670 * 13 12 11 15 15 O 1.21279 * 119.99810 * 359.97438 * 14 13 12 16 16 C 1.50694 * 120.00185 * 179.97438 * 14 13 12 17 17 C 1.53006 * 109.47420 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.04680 * 53.59493 * 17 16 14 19 19 C 1.54367 * 110.26172 * 292.03413 * 17 16 14 20 20 C 1.54165 * 108.77244 * 193.60370 * 19 17 16 21 21 S 1.82919 * 105.08901 * 27.91531 * 20 19 17 22 22 O 1.42104 * 109.35170 * 244.47883 * 21 20 19 23 23 O 1.42101 * 109.47262 * 111.31228 * 21 20 19 24 24 C 1.55045 * 110.02938 * 174.99599 * 17 16 14 25 25 C 1.53033 * 109.53106 * 61.37244 * 12 11 10 26 26 C 1.46929 * 120.62818 * 151.82445 * 9 7 2 27 27 H 0.96997 * 119.99841 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.58526 * 113.79119 * 10 9 7 29 29 H 1.08997 * 109.70161 * 353.44423 * 10 9 7 30 30 H 1.08997 * 109.49942 * 185.40934 * 11 10 9 31 31 H 1.08997 * 109.49636 * 65.31493 * 11 10 9 32 32 H 1.09000 * 109.46036 * 301.35116 * 12 11 10 33 33 H 0.97001 * 119.99855 * 334.96988 * 13 12 11 34 34 H 1.09001 * 109.47360 * 59.99307 * 16 14 13 35 35 H 1.09002 * 109.47164 * 299.99642 * 16 14 13 36 36 H 1.08996 * 109.60582 * 73.73558 * 19 17 16 37 37 H 1.09000 * 109.61721 * 313.47840 * 19 17 16 38 38 H 1.09011 * 110.31818 * 269.01180 * 20 19 17 39 39 H 1.08995 * 110.31968 * 146.82192 * 20 19 17 40 40 H 1.09003 * 110.78750 * 43.45750 * 24 17 16 41 41 H 1.08999 * 110.79097 * 280.19017 * 24 17 16 42 42 H 1.09004 * 109.50104 * 58.57669 * 25 12 11 43 43 H 1.08995 * 109.50422 * 178.67716 * 25 12 11 44 44 H 1.09001 * 109.59121 * 246.20745 * 26 9 7 45 45 H 1.09004 * 109.58629 * 6.49598 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2728 9 7 1.3700 -2.3625 0.3444 10 6 0.2260 -2.3409 1.2661 11 6 0.4973 -3.3208 2.4119 12 6 0.8118 -4.7021 1.8327 13 7 1.0394 -5.6497 2.9266 14 6 0.8355 -6.9673 2.7301 15 8 0.4632 -7.3685 1.6478 16 6 1.0701 -7.9421 3.8551 17 6 0.7672 -9.3618 3.3714 18 1 1.3346 -9.5770 2.4660 19 6 -0.7437 -9.5229 3.0994 20 6 -1.0638 -11.0237 2.9510 21 16 0.1996 -11.8818 3.9577 22 8 1.0210 -12.6719 3.1090 23 8 -0.4195 -12.4716 5.0927 24 6 1.1242 -10.3873 4.4781 25 6 2.0673 -4.6178 0.9617 26 6 1.8137 -3.6528 -0.2008 27 1 -0.4850 0.8400 0.0004 28 1 -0.6771 -2.6410 0.7347 29 1 0.0967 -1.3358 1.6677 30 1 -0.3832 -3.3861 3.0509 31 1 1.3471 -2.9698 2.9973 32 1 -0.0283 -5.0417 1.2269 33 1 1.3369 -5.3287 3.7923 34 1 0.4157 -7.6962 4.6914 35 1 2.1096 -7.8817 4.1773 36 1 -1.0079 -8.9993 2.1807 37 1 -1.3117 -9.1077 3.9319 38 1 -0.9850 -11.3260 1.9067 39 1 -2.0618 -11.2375 3.3335 40 1 0.7811 -10.0399 5.4527 41 1 2.1966 -10.5817 4.4940 42 1 2.9022 -4.2544 1.5609 43 1 2.3044 -5.6063 0.5684 44 1 1.0400 -4.0599 -0.8518 45 1 2.7331 -3.5125 -0.7692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701295366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:07 Heat of formation + Delta-G solvation = -96.974188 kcal Electronic energy + Delta-G solvation = -26419.767798 eV Core-core repulsion = 22564.601766 eV Total energy + Delta-G solvation = -3855.166031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.09190 -37.85229 -37.36430 -36.71927 -36.29700 -34.47827 -32.34678 -31.40144 -30.22911 -29.63499 -28.44668 -25.25378 -24.42894 -22.41957 -22.15905 -21.12487 -20.21716 -19.38475 -19.14620 -17.59777 -17.08813 -16.74521 -16.55127 -16.00088 -15.76182 -15.40155 -14.90751 -14.73052 -14.42066 -13.98255 -13.89483 -13.60910 -13.60484 -13.14450 -12.94919 -12.58153 -12.54148 -12.48683 -12.37957 -12.34564 -12.17136 -11.75268 -11.52760 -11.26474 -11.18399 -11.00323 -10.93066 -10.75456 -10.69872 -10.53958 -10.34739 -10.09612 -9.94025 -9.74968 -9.51424 -8.80521 -8.50997 -6.73686 -5.84735 -3.26952 -0.31526 2.14889 2.63204 3.13037 3.28770 3.33902 3.40842 3.42795 3.63020 3.91401 4.17989 4.22316 4.41288 4.45092 4.50903 4.71436 4.86992 4.95423 5.08764 5.23448 5.27862 5.29637 5.36097 5.38689 5.44431 5.52547 5.68271 5.79579 5.79688 6.00497 6.19673 6.26138 6.45738 6.47991 6.51863 6.73512 6.82837 6.92903 7.25035 7.51857 7.62465 7.74904 8.26684 8.39480 9.15620 9.78738 10.35591 11.24289 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.044056 B = 0.002039 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.395278 B =13731.294267 C =13780.747264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.150 3.850 13 N -0.723 5.723 14 C 0.507 3.493 15 O -0.541 6.541 16 C -0.130 4.130 17 C -0.071 4.071 18 H 0.106 0.894 19 C -0.116 4.116 20 C -0.587 4.587 21 S 2.386 3.614 22 O -0.938 6.938 23 O -0.943 6.943 24 C -0.588 4.588 25 C -0.138 4.138 26 C 0.147 3.853 27 H 0.254 0.746 28 H 0.020 0.980 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.396 0.604 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.020 0.980 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 -18.806 11.911 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.047 3.953 13 N -0.373 5.373 14 C 0.293 3.707 15 O -0.418 6.418 16 C -0.171 4.171 17 C -0.091 4.091 18 H 0.124 0.876 19 C -0.154 4.154 20 C -0.717 4.717 21 S 2.570 3.430 22 O -0.936 6.936 23 O -0.940 6.940 24 C -0.718 4.718 25 C -0.179 4.179 26 C 0.020 3.980 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.230 0.770 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.038 0.962 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.424 -19.922 11.313 22.914 hybrid contribution 0.454 1.901 0.316 1.980 sum 0.030 -18.021 11.629 21.448 Atomic orbital electron populations 1.70023 1.05270 1.25584 1.53895 1.25061 0.95300 0.98471 1.00844 0.86300 0.79125 0.83580 0.77779 1.21348 1.21549 1.20505 1.19171 0.92577 0.84733 1.41761 0.91670 1.44088 1.35829 1.01677 1.49947 1.20735 0.88903 0.97923 0.87682 1.22533 1.00491 0.94784 1.00831 1.21060 0.98531 0.88271 0.87471 1.46384 1.68418 1.06625 1.15888 1.20527 0.77469 0.83266 0.89480 1.90692 1.46354 1.78232 1.26557 1.21653 1.04637 0.92680 0.98105 1.21676 0.96837 0.93627 0.96983 0.87614 1.22176 0.94693 0.92345 1.06215 1.30456 1.16959 1.08572 1.15698 1.09120 0.78640 0.78271 0.76959 1.93628 1.66795 1.65885 1.67242 1.93611 1.75917 1.74895 1.49615 1.30760 1.14400 1.18394 1.08252 1.22366 0.97108 0.99519 0.98878 1.20876 0.97922 0.86560 0.92626 0.93573 0.96143 0.89033 0.92785 0.92189 0.90001 0.77043 0.88332 0.88091 0.87093 0.90041 0.84397 0.84471 0.84279 0.84273 0.92371 0.92751 0.96217 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.57 11.19 55.49 0.62 -24.95 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.25 -6.76 9.58 -15.06 -0.14 -6.90 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -14.38 2.99 -172.31 -0.52 -14.89 16 10 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16 11 C -0.15 -2.50 5.55 -26.61 -0.15 -2.65 16 12 C 0.15 2.38 2.42 -67.89 -0.16 2.22 16 13 N -0.72 -8.47 5.08 -53.77 -0.27 -8.75 16 14 C 0.51 5.74 7.58 -10.99 -0.08 5.66 16 15 O -0.54 -8.12 13.98 5.56 0.08 -8.04 16 16 C -0.13 -0.85 5.20 -27.88 -0.15 -1.00 16 17 C -0.07 -0.47 2.22 -88.82 -0.20 -0.67 16 18 H 0.11 0.81 7.92 -51.93 -0.41 0.40 16 19 C -0.12 -0.78 5.37 -25.41 -0.14 -0.92 16 20 C -0.59 -3.35 7.26 37.77 0.27 -3.07 16 21 S 2.39 16.90 6.10 -107.50 -0.66 16.24 16 22 O -0.94 -10.35 18.15 -57.73 -1.05 -11.40 16 23 O -0.94 -9.83 18.15 -57.73 -1.05 -10.88 16 24 C -0.59 -2.74 6.65 38.24 0.25 -2.48 16 25 C -0.14 -2.38 5.65 -26.61 -0.15 -2.53 16 26 C 0.15 3.06 6.52 -3.70 -0.02 3.03 16 27 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.09 2.32 6.07 -51.93 -0.31 2.00 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 33 H 0.40 3.53 8.60 -40.82 -0.35 3.18 16 34 H 0.10 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.11 1.01 6.64 -51.93 -0.34 0.67 16 37 H 0.08 0.42 8.06 -51.93 -0.42 0.00 16 38 H 0.14 0.74 8.14 -51.92 -0.42 0.32 16 39 H 0.14 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.14 0.38 8.10 -51.93 -0.42 -0.04 16 41 H 0.14 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 LS Contribution 367.39 15.07 5.54 5.54 Total: -1.00 -36.18 367.39 -10.37 -46.55 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.26 Total: -0.08 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.77 Total: -5.44 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.17 Total: -48.59 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -2.02 Total: -30.32 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Atomic # 16 Polarization: 16.90 SS G_CDS: -0.66 Total: 16.24 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.18 -10.37 -46.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701295366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.428 kcal (2) G-P(sol) polarization free energy of solvation -36.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds