Wall clock time and date at job start Tue Mar 31 2020 05:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46937 * 110.56377 * 3 2 1 5 5 S 1.81398 * 109.46953 * 179.97438 * 4 3 2 6 6 O 1.42105 * 110.54054 * 68.37673 * 5 4 3 7 7 O 1.42100 * 110.54756 * 291.62414 * 5 4 3 8 8 N 1.65599 * 104.44985 * 179.97438 * 5 4 3 9 9 C 1.46507 * 120.00215 * 270.00225 * 8 5 4 10 10 C 1.50691 * 109.46974 * 264.99946 * 9 8 5 11 11 H 1.08003 * 120.00383 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99786 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00129 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00114 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46912 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47263 * 119.99692 * 14 12 10 17 17 H 1.48499 * 109.47214 * 239.99814 * 14 12 10 18 18 C 1.46507 * 119.99953 * 90.00067 * 8 5 4 19 19 C 1.53002 * 109.46871 * 265.00013 * 18 8 5 20 20 N 1.46908 * 109.46707 * 179.97438 * 19 18 8 21 21 C 1.47024 * 110.99261 * 46.32476 * 20 19 18 22 22 C 1.53103 * 109.24985 * 182.34870 * 21 20 19 23 23 O 1.43012 * 109.29295 * 303.21723 * 22 21 20 24 24 C 1.43011 * 113.74271 * 58.65008 * 23 22 21 25 25 C 1.47018 * 110.99661 * 170.00016 * 20 19 18 26 26 H 4.44653 * 5.63347 * 179.97438 * 4 1 2 27 27 H 1.08995 * 109.47544 * 350.55798 * 3 2 1 28 28 H 1.09008 * 109.46656 * 230.55785 * 3 2 1 29 29 H 1.09007 * 109.47295 * 59.99753 * 4 3 2 30 30 H 1.08997 * 109.47212 * 299.99633 * 4 3 2 31 31 H 1.08996 * 109.46527 * 25.00071 * 9 8 5 32 32 H 1.09002 * 109.47196 * 144.99713 * 9 8 5 33 33 H 0.97004 * 120.00513 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.46696 * 145.00132 * 18 8 5 35 35 H 1.08999 * 109.46956 * 24.99978 * 18 8 5 36 36 H 1.09003 * 109.46906 * 60.00255 * 19 18 8 37 37 H 1.08999 * 109.47302 * 299.99754 * 19 18 8 38 38 H 1.08998 * 109.47369 * 62.43595 * 21 20 19 39 39 H 1.08998 * 109.54483 * 302.29802 * 21 20 19 40 40 H 1.09002 * 109.50635 * 183.25881 * 22 21 20 41 41 H 1.09003 * 109.50698 * 63.17493 * 22 21 20 42 42 H 1.08997 * 109.50806 * 61.26171 * 24 23 22 43 43 H 1.08997 * 109.50924 * 181.35636 * 24 23 22 44 44 H 1.08994 * 109.50209 * 57.67478 * 25 20 19 45 45 H 1.08997 * 109.50514 * 297.54292 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.5076 -1.3506 5 16 4.9697 0.5091 -1.3503 6 8 5.4694 -0.8210 -1.3254 7 8 5.4675 1.4955 -0.4568 8 7 5.3826 1.0718 -2.8520 9 6 5.5664 0.1326 -3.9613 10 6 7.0266 -0.2177 -4.0862 11 1 7.7461 0.2161 -3.4075 12 6 7.4445 -1.0914 -5.0676 13 7 6.5685 -1.6194 -5.8944 14 14 9.2548 -1.5252 -5.2230 15 1 10.0281 -0.8029 -4.1810 16 1 9.4302 -2.9889 -5.0447 17 1 9.7454 -1.1280 -6.5672 18 6 5.5643 2.5089 -3.0713 19 6 4.2630 3.1119 -3.6045 20 7 4.4450 4.5531 -3.8238 21 6 5.7048 4.8231 -4.5320 22 6 5.8823 6.3359 -4.6873 23 8 4.7489 6.8769 -5.3713 24 6 3.5056 6.6328 -4.7080 25 6 3.3033 5.1231 -4.5539 26 1 -1.0502 -0.0003 0.0001 27 1 3.0098 -1.0128 0.1686 28 1 3.0090 0.6538 0.7937 29 1 2.7919 1.5212 -1.5191 30 1 2.7927 -0.1454 -2.1442 31 1 4.9905 -0.7728 -3.7698 32 1 5.2225 0.5927 -4.8877 33 1 6.8625 -2.2337 -6.5851 34 1 6.3623 2.6677 -3.7967 35 1 5.8284 2.9897 -2.1294 36 1 3.4651 2.9530 -2.8791 37 1 3.9990 2.6312 -4.5464 38 1 5.6751 4.3571 -5.5169 39 1 6.5389 4.4156 -3.9608 40 1 6.7857 6.5392 -5.2623 41 1 5.9667 6.7954 -3.7025 42 1 3.5203 7.1004 -3.7236 43 1 2.6901 7.0515 -5.2977 44 1 2.3849 4.9337 -3.9984 45 1 3.2350 4.6625 -5.5394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711065655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:56 Heat of formation + Delta-G solvation = -49.885617 kcal Electronic energy + Delta-G solvation = -27218.412921 eV Core-core repulsion = 23365.288804 eV Total energy + Delta-G solvation = -3853.124117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.63604 -36.90529 -36.54005 -35.44737 -35.26580 -34.92125 -32.55701 -31.29351 -31.12584 -29.56330 -27.18788 -25.61914 -24.66354 -24.08883 -22.80567 -21.57121 -20.19696 -18.50713 -18.19502 -17.17002 -16.60654 -16.54324 -16.15812 -15.96351 -15.83146 -15.18731 -15.14816 -14.92327 -14.64632 -14.38291 -14.18682 -13.90710 -13.46879 -13.16095 -12.91408 -12.72935 -12.40100 -12.16305 -12.06275 -11.90049 -11.58256 -11.51816 -11.44563 -11.39026 -11.09547 -10.87333 -10.74556 -10.69421 -10.56873 -10.44238 -10.27492 -10.24030 -10.02658 -9.81242 -9.67274 -8.48557 -8.39499 -8.14594 -6.10138 -4.13462 0.69133 2.64892 2.71197 3.16620 3.29166 3.37293 3.42898 3.72355 3.87454 4.19361 4.36373 4.41756 4.49102 4.73233 4.77949 4.92368 4.96421 5.02665 5.09039 5.17563 5.22150 5.25105 5.30411 5.41029 5.47491 5.54661 5.56460 5.67669 5.70647 5.74802 5.81611 5.85791 5.88354 5.98627 6.27536 6.40042 6.91295 6.93358 7.06072 7.11403 7.29390 7.47611 7.50037 7.87649 8.15707 8.89414 9.51935 10.98675 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.006733 B = 0.005559 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4157.667984 B = 5035.218079 C = 8244.747538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.002 4.002 4 C -0.644 4.644 5 S 2.605 3.395 6 O -0.931 6.931 7 O -0.967 6.967 8 N -0.980 5.980 9 C 0.255 3.745 10 C -0.523 4.523 11 H 0.062 0.938 12 C 0.062 3.938 13 N -0.897 5.897 14 Si 0.896 3.104 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.284 1.284 18 C 0.117 3.883 19 C 0.032 3.968 20 N -0.533 5.533 21 C 0.007 3.993 22 C 0.064 3.936 23 O -0.389 6.389 24 C 0.065 3.935 25 C 0.016 3.984 26 H 0.219 0.781 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.039 0.961 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.962 11.879 5.551 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.176 4.176 3 C -0.039 4.039 4 C -0.769 4.769 5 S 2.695 3.305 6 O -0.921 6.921 7 O -0.957 6.957 8 N -0.818 5.818 9 C 0.133 3.867 10 C -0.563 4.563 11 H 0.081 0.919 12 C -0.140 4.140 13 N -0.537 5.537 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.210 1.210 18 C -0.010 4.010 19 C -0.098 4.098 20 N -0.259 5.259 21 C -0.121 4.121 22 C -0.013 4.013 23 O -0.307 6.307 24 C -0.012 4.012 25 C -0.112 4.112 26 H 0.236 0.764 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.113 0.887 44 H 0.102 0.898 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.338 11.812 6.339 16.337 hybrid contribution -0.158 -0.877 -1.223 1.513 sum -9.496 10.936 5.116 15.360 Atomic orbital electron populations 1.24859 0.95834 1.01171 1.00598 1.22713 0.93981 1.00364 1.00518 1.18353 0.86791 1.03496 0.95301 1.30986 1.30602 1.10550 1.04771 1.05220 0.76717 0.74662 0.73862 1.93648 1.75722 1.37270 1.85496 1.93530 1.77017 1.61185 1.63976 1.57444 1.82306 1.13124 1.28946 1.19110 0.97630 0.86459 0.83457 1.21482 0.92927 1.26613 1.15259 0.91928 1.24923 0.98021 0.95591 0.95485 1.69919 1.33790 1.31124 1.18820 0.86464 0.84890 0.78472 0.77768 1.19572 1.20806 1.21042 1.21341 0.96338 0.80257 1.03019 1.22730 0.99645 0.86441 1.00971 1.62263 1.02140 1.13938 1.47533 1.22959 0.93661 0.97110 0.98393 1.22704 0.88865 0.92158 0.97558 1.87967 1.15054 1.77752 1.49934 1.22628 0.86634 0.94099 0.97815 1.22792 0.94776 0.96130 0.97525 0.76435 0.87996 0.88219 0.85326 0.84712 0.94293 0.94783 0.92744 0.89134 0.89057 0.91183 0.93396 0.93296 0.88373 0.88438 0.92268 0.92350 0.88736 0.89814 0.93749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.24 19.25 29.55 0.57 -1.67 16 2 C -0.17 -2.19 13.34 -37.12 -0.50 -2.69 16 3 C 0.00 -0.02 5.71 -29.52 -0.17 -0.19 16 4 C -0.64 -8.59 6.13 37.16 0.23 -8.36 16 5 S 2.61 46.67 5.37 -107.50 -0.58 46.09 16 6 O -0.93 -20.63 16.98 -57.54 -0.98 -21.61 16 7 O -0.97 -18.36 16.53 -57.54 -0.95 -19.31 16 8 N -0.98 -18.75 2.70 -115.66 -0.31 -19.06 16 9 C 0.26 6.01 5.01 -5.19 -0.03 5.98 16 10 C -0.52 -14.15 9.38 -34.44 -0.32 -14.47 16 11 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 13 N -0.90 -25.59 13.29 55.43 0.74 -24.85 16 14 Si 0.90 21.48 29.54 -169.99 -5.02 16.45 16 15 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 C 0.12 1.93 4.92 -4.04 -0.02 1.91 16 19 C 0.03 0.44 5.60 -3.82 -0.02 0.42 16 20 N -0.53 -6.82 4.88 -234.29 -1.14 -7.97 16 21 C 0.01 0.09 4.94 -3.70 -0.02 0.07 16 22 C 0.06 0.71 7.01 37.21 0.26 0.97 16 23 O -0.39 -4.79 10.83 -35.23 -0.38 -5.17 16 24 C 0.07 0.66 7.01 37.21 0.26 0.92 16 25 C 0.02 0.18 5.63 -3.71 -0.02 0.16 16 26 H 0.22 1.50 7.80 -54.08 -0.42 1.08 16 27 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.10 1.07 8.14 -51.92 -0.42 0.65 16 29 H 0.13 1.47 6.96 -51.92 -0.36 1.11 16 30 H 0.13 1.75 8.14 -51.93 -0.42 1.32 16 31 H 0.04 0.97 7.61 -51.93 -0.39 0.57 16 32 H 0.03 0.82 8.11 -51.93 -0.42 0.39 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.09 1.54 6.25 -51.93 -0.32 1.22 16 35 H 0.09 1.47 6.82 -51.93 -0.35 1.11 16 36 H 0.07 0.88 6.96 -51.93 -0.36 0.52 16 37 H 0.05 0.71 8.08 -51.93 -0.42 0.30 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 1.22 6.05 -51.93 -0.31 0.90 16 40 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 383.01 15.07 5.77 5.77 Total: -1.00 -33.87 383.01 -9.87 -43.74 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.15 Total: 1.26 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 0.13 Total: -15.34 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.72 Total: -51.88 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -2.31 Total: -46.09 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 46.67 SS G_CDS: -0.58 Total: 46.09 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.87 -9.87 -43.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711065655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.142 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds