Wall clock time and date at job start Tue Mar 31 2020 05:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46635 * 2 1 4 4 H 1.08998 * 109.59702 * 331.67775 * 3 2 1 5 5 C 1.51312 * 109.87345 * 211.18350 * 3 2 1 6 6 O 1.21287 * 120.36181 * 128.63938 * 5 3 2 7 7 N 1.34243 * 119.28724 * 308.82100 * 5 3 2 8 8 C 1.46698 * 120.37032 * 356.66506 * 7 5 3 9 9 C 1.53039 * 109.06685 * 288.97206 * 8 7 5 10 10 C 1.52451 * 110.17342 * 88.67869 * 9 8 7 11 11 N 1.46064 * 111.51342 * 297.33707 * 10 9 8 12 12 S 1.65610 * 119.80820 * 242.93950 * 11 10 9 13 13 O 1.42105 * 104.27432 * 206.06950 * 12 11 10 14 14 O 1.42089 * 104.27546 * 333.92800 * 12 11 10 15 15 C 1.81403 * 104.44758 * 89.99823 * 12 11 10 16 16 C 1.52998 * 109.46917 * 174.54213 * 15 12 11 17 17 C 1.50699 * 115.54960 * 40.25712 * 16 15 12 18 18 H 1.07997 * 120.00546 * 274.23755 * 17 16 15 19 19 C 1.37878 * 119.99956 * 94.23707 * 17 16 15 20 20 N 1.31515 * 120.00058 * 354.63691 * 19 17 16 21 21 Si 1.86798 * 120.00229 * 174.63381 * 19 17 16 22 22 H 1.48499 * 109.47354 * 89.99906 * 21 19 17 23 23 H 1.48503 * 109.47598 * 210.00030 * 21 19 17 24 24 H 1.48505 * 109.47016 * 330.00226 * 21 19 17 25 25 C 1.53005 * 117.50038 * 254.55208 * 16 15 12 26 26 C 1.52995 * 117.49791 * 185.92739 * 16 15 12 27 27 H 1.08991 * 109.47562 * 300.00002 * 1 2 3 28 28 H 1.08999 * 109.47154 * 60.00667 * 1 2 3 29 29 H 1.09003 * 109.46727 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47323 * 239.99808 * 2 1 3 31 31 H 1.08999 * 109.47154 * 119.99333 * 2 1 3 32 32 H 0.97006 * 119.81291 * 176.93094 * 7 5 3 33 33 H 1.09000 * 109.54110 * 48.84343 * 8 7 5 34 34 H 1.08999 * 109.53816 * 169.09731 * 8 7 5 35 35 H 1.09002 * 109.35133 * 208.88987 * 9 8 7 36 36 H 1.08998 * 109.35541 * 328.46311 * 9 8 7 37 37 H 1.08996 * 109.07150 * 57.85687 * 10 9 8 38 38 H 1.09001 * 109.07015 * 176.80926 * 10 9 8 39 39 H 1.08996 * 109.46932 * 294.54355 * 15 12 11 40 40 H 1.09001 * 109.47154 * 54.54841 * 15 12 11 41 41 H 0.97003 * 120.00035 * 185.00028 * 20 19 17 42 42 H 1.08997 * 117.49917 * 359.97438 * 25 16 15 43 43 H 1.08996 * 117.49621 * 145.02186 * 25 16 15 44 44 H 1.09006 * 117.49948 * 214.97972 * 26 16 15 45 45 H 1.08995 * 117.50204 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3095 2.0885 -0.4872 5 6 3.3592 1.5219 -0.7368 6 8 3.5203 2.3378 -1.6196 7 7 4.3483 0.6769 -0.4054 8 6 4.1786 -0.2634 0.7077 9 6 4.1937 0.5142 2.0258 10 6 2.7838 0.9715 2.3825 11 7 2.2492 1.8904 1.3808 12 16 1.8778 3.4471 1.8067 13 8 0.8740 3.8343 0.8784 14 8 1.5996 3.3729 3.1981 15 6 3.4089 4.3744 1.5123 16 6 3.1543 5.8654 1.7422 17 6 2.2752 6.2007 2.9194 18 1 1.2012 6.2098 2.8062 19 6 2.8420 6.4959 4.1411 20 7 4.1416 6.3825 4.3077 21 14 1.7641 7.0569 5.5598 22 1 1.3110 5.8742 6.3351 23 1 2.5417 7.9608 6.4451 24 1 0.5825 7.7818 5.0271 25 6 3.0556 6.7639 0.5077 26 6 4.2896 6.8355 1.4094 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 5.1813 0.6909 -0.9023 33 1 3.2271 -0.7846 0.6029 34 1 4.9943 -0.9864 0.7017 35 1 4.5769 -0.1274 2.8193 36 1 4.8410 1.3852 1.9240 37 1 2.1329 0.0998 2.4494 38 1 2.8061 1.4729 3.3500 39 1 4.1814 4.0276 2.1986 40 1 3.7377 4.2162 0.4851 41 1 4.5320 6.5195 5.1851 42 1 3.1724 6.2928 -0.4683 43 1 2.3546 7.5976 0.5468 44 1 4.4005 7.7165 2.0417 45 1 5.2181 6.4115 1.0270 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922015705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:47 Heat of formation + Delta-G solvation = -65.523882 kcal Electronic energy + Delta-G solvation = -29125.936166 eV Core-core repulsion = 25272.133923 eV Total energy + Delta-G solvation = -3853.802243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.61676 -37.40519 -36.66665 -36.29544 -35.12837 -34.83540 -33.21337 -32.00079 -31.02351 -28.18631 -27.17244 -25.64172 -25.33620 -23.40450 -21.08355 -20.63294 -20.34971 -19.42274 -18.68456 -17.45622 -17.33133 -16.70389 -16.24223 -15.82395 -15.09737 -14.83628 -14.67010 -14.44562 -14.16014 -13.92614 -13.72547 -13.64181 -13.45593 -13.01251 -12.74170 -12.46950 -12.35807 -12.13722 -11.79139 -11.67598 -11.64169 -11.44810 -11.17101 -10.99934 -10.91929 -10.83451 -10.74608 -10.64099 -10.49263 -10.31606 -10.15179 -10.01508 -9.66565 -9.14896 -8.98352 -8.81336 -8.46042 -8.05310 -6.13414 -4.28532 1.03113 2.45538 3.20942 3.32839 3.39019 3.40368 3.43532 4.29253 4.39982 4.49309 4.57515 4.69115 4.72865 4.85830 4.95135 5.03231 5.10359 5.15627 5.23526 5.26259 5.40121 5.48725 5.54485 5.60504 5.65765 5.78051 5.82301 5.88256 5.95902 6.08298 6.12904 6.18617 6.36910 6.46710 6.66524 6.72328 6.76533 6.82025 7.03451 7.12074 7.25895 7.53856 7.78212 8.15461 8.21182 8.78900 9.46927 10.93116 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016351 B = 0.005157 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.031552 B = 5428.360789 C = 5763.447201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.138 4.138 3 C 0.129 3.871 4 H 0.135 0.865 5 C 0.506 3.494 6 O -0.535 6.535 7 N -0.722 5.722 8 C 0.083 3.917 9 C -0.165 4.165 10 C 0.106 3.894 11 N -0.999 5.999 12 S 2.616 3.384 13 O -0.964 6.964 14 O -0.937 6.937 15 C -0.557 4.557 16 C 0.043 3.957 17 C -0.536 4.536 18 H 0.067 0.933 19 C 0.093 3.907 20 N -0.869 5.869 21 Si 0.890 3.110 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.269 1.269 25 C -0.206 4.206 26 C -0.132 4.132 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.398 0.602 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.121 0.879 40 H 0.099 0.901 41 H 0.264 0.736 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.078 -17.600 -5.594 18.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.176 4.176 3 C 0.019 3.981 4 H 0.153 0.847 5 C 0.290 3.710 6 O -0.409 6.409 7 N -0.375 5.375 8 C -0.040 4.040 9 C -0.205 4.205 10 C -0.019 4.019 11 N -0.834 5.834 12 S 2.714 3.286 13 O -0.955 6.955 14 O -0.927 6.927 15 C -0.689 4.689 16 C 0.041 3.959 17 C -0.573 4.573 18 H 0.085 0.915 19 C -0.113 4.113 20 N -0.504 5.504 21 Si 0.716 3.284 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.193 1.193 25 C -0.244 4.244 26 C -0.171 4.171 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.234 0.766 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.123 0.877 39 H 0.139 0.861 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.259 -16.842 -5.502 17.720 hybrid contribution 0.902 0.227 0.464 1.039 sum 1.161 -16.615 -5.038 17.401 Atomic orbital electron populations 1.21840 0.94375 1.01894 1.03105 1.22200 0.97549 0.94447 1.03398 1.21484 0.94215 0.99563 0.82852 0.84712 1.21402 0.86772 0.79927 0.82935 1.90786 1.82253 1.35978 1.31930 1.45977 1.17916 1.38534 1.35110 1.22281 1.04498 0.91631 0.85619 1.22426 0.98442 1.01789 0.97822 1.21196 0.93546 0.95026 0.92127 1.58162 1.80420 1.30425 1.14416 1.05053 0.77491 0.71810 0.74231 1.93476 1.55305 1.81449 1.65268 1.93527 1.83502 1.84265 1.31446 1.30004 1.19856 1.11334 1.07746 1.18195 1.00126 0.83729 0.93887 1.20569 0.92451 1.51078 0.93223 0.91494 1.24909 0.94837 0.93038 0.98542 1.69998 1.10246 1.46949 1.23165 0.86599 0.80749 0.79029 0.82005 1.19648 1.20985 1.19339 1.23198 1.02651 1.04317 0.94195 1.22437 0.90726 1.02706 1.01191 0.91891 0.92041 0.92258 0.90634 0.88700 0.76624 0.88301 0.89733 0.89260 0.90384 0.90619 0.87702 0.86102 0.88239 0.92649 0.91197 0.89690 0.89167 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.73 37.16 0.36 -1.15 16 2 C -0.14 -1.32 3.94 -26.72 -0.11 -1.43 16 3 C 0.13 1.80 2.58 -68.69 -0.18 1.63 16 4 H 0.14 2.17 6.42 -51.93 -0.33 1.84 16 5 C 0.51 7.33 6.86 -10.92 -0.07 7.26 16 6 O -0.53 -9.98 17.95 5.55 0.10 -9.88 16 7 N -0.72 -7.47 5.29 -60.04 -0.32 -7.79 16 8 C 0.08 0.61 6.34 -3.91 -0.02 0.58 16 9 C -0.16 -1.50 5.92 -26.99 -0.16 -1.66 16 10 C 0.11 1.26 5.53 -4.56 -0.03 1.24 16 11 N -1.00 -15.34 2.82 -108.73 -0.31 -15.64 16 12 S 2.62 55.90 4.61 -107.50 -0.50 55.40 16 13 O -0.96 -22.70 16.50 -57.54 -0.95 -23.64 16 14 O -0.94 -22.53 15.59 -57.54 -0.90 -23.42 16 15 C -0.56 -12.42 6.28 37.16 0.23 -12.19 16 16 C 0.04 1.10 1.82 -155.66 -0.28 0.82 16 17 C -0.54 -15.11 6.93 -34.44 -0.24 -15.35 16 18 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 19 C 0.09 2.60 5.35 -17.82 -0.10 2.51 16 20 N -0.87 -24.32 12.31 55.43 0.68 -23.63 16 21 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 C -0.21 -4.87 9.88 -26.73 -0.26 -5.13 16 26 C -0.13 -3.21 8.95 -26.73 -0.24 -3.45 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.62 8.12 -51.93 -0.42 0.19 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.61 7.72 -51.93 -0.40 0.21 16 31 H 0.10 0.73 3.43 -51.93 -0.18 0.55 16 32 H 0.40 3.63 8.93 -40.82 -0.36 3.27 16 33 H 0.10 0.62 3.66 -51.93 -0.19 0.43 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 37 H 0.08 0.68 6.35 -51.93 -0.33 0.35 16 38 H 0.10 1.43 6.75 -51.93 -0.35 1.08 16 39 H 0.12 2.64 8.14 -51.93 -0.42 2.22 16 40 H 0.10 2.08 7.95 -51.92 -0.41 1.67 16 41 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 42 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 43 H 0.08 1.97 8.14 -51.93 -0.42 1.54 16 44 H 0.09 2.31 7.92 -51.93 -0.41 1.90 16 45 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -35.36 362.56 -9.57 -44.93 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.74 Total: 7.68 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: -1.09 Total: -26.33 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.06 Total: -47.06 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: -1.75 Total: -56.95 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 55.90 SS G_CDS: -0.50 Total: 55.40 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.36 -9.57 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922015705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.598 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds