Wall clock time and date at job start Tue Mar 31 2020 07:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47028 * 2 1 4 4 N 1.46498 * 109.46950 * 119.99875 * 2 1 3 5 5 C 1.34773 * 120.00049 * 274.99554 * 4 2 1 6 6 O 1.21279 * 120.00298 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00041 * 180.02562 * 5 4 2 8 8 H 1.09005 * 109.38391 * 299.79140 * 7 5 4 9 9 C 1.52629 * 109.30962 * 59.62914 * 7 5 4 10 10 C 1.52588 * 110.61812 * 190.19518 * 9 7 5 11 11 C 1.53035 * 109.90395 * 289.85864 * 10 9 7 12 12 S 1.81677 * 108.99920 * 63.70142 * 11 10 9 13 13 O 1.42100 * 108.66085 * 60.02724 * 12 11 10 14 14 O 1.42096 * 108.66400 * 191.27627 * 12 11 10 15 15 C 1.53035 * 109.38436 * 180.02562 * 7 5 4 16 16 C 1.52996 * 109.46988 * 239.99784 * 2 1 3 17 17 C 1.53945 * 113.74229 * 156.67390 * 16 2 1 18 18 N 1.47583 * 86.11716 * 222.04738 * 17 16 2 19 19 C 1.36932 * 134.49120 * 204.63831 * 18 17 16 20 20 H 1.07998 * 120.00269 * 173.48864 * 19 18 17 21 21 C 1.38813 * 120.00111 * 353.48381 * 19 18 17 22 22 N 1.31619 * 120.00239 * 5.07029 * 21 19 18 23 23 Si 1.86803 * 120.00229 * 185.06416 * 21 19 18 24 24 H 1.48495 * 109.46780 * 94.98875 * 23 21 19 25 25 H 1.48499 * 109.47367 * 214.98996 * 23 21 19 26 26 H 1.48500 * 109.47031 * 334.99100 * 23 21 19 27 27 C 1.47582 * 91.01204 * 24.64213 * 18 17 16 28 28 H 1.09002 * 109.46689 * 59.99898 * 1 2 3 29 29 H 1.08998 * 109.47528 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46901 * 300.00260 * 1 2 3 31 31 H 0.97000 * 119.99766 * 94.99574 * 4 2 1 32 32 H 1.09007 * 109.33571 * 69.85532 * 9 7 5 33 33 H 1.08991 * 109.17089 * 310.43654 * 9 7 5 34 34 H 1.09001 * 109.38207 * 169.75449 * 10 9 7 35 35 H 1.09001 * 109.38552 * 49.96703 * 10 9 7 36 36 H 1.08998 * 109.55256 * 183.55261 * 11 10 9 37 37 H 1.09000 * 109.55017 * 303.85009 * 11 10 9 38 38 H 1.08997 * 109.55544 * 56.44152 * 15 7 5 39 39 H 1.08999 * 109.54742 * 296.15150 * 15 7 5 40 40 H 1.09003 * 112.94551 * 288.41251 * 16 2 1 41 41 H 1.08998 * 113.77099 * 336.35383 * 17 16 2 42 42 H 1.09002 * 113.76521 * 107.74319 * 17 16 2 43 43 H 0.96997 * 120.00879 * 180.02562 * 22 21 19 44 44 H 1.09000 * 113.76239 * 221.05136 * 27 18 17 45 45 H 1.09002 * 113.76695 * 89.66091 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8584 1.1584 2.4117 7 6 2.6500 -0.7285 3.5875 8 1 1.9747 -1.5481 3.8334 9 6 4.0454 -1.2836 3.3149 10 6 4.4813 -2.2177 4.4400 11 6 4.7509 -1.4108 5.7121 12 16 3.2024 -0.6343 6.2593 13 8 2.2497 -1.6554 6.5220 14 8 3.5030 0.3141 7.2740 15 6 2.7000 0.2564 4.7577 16 6 2.0400 -0.7213 -1.2492 17 6 3.4666 -0.3146 -1.6608 18 7 2.9583 -0.3121 -3.0463 19 6 3.5328 -0.4679 -4.2795 20 1 2.9116 -0.5279 -5.1609 21 6 4.9136 -0.5487 -4.3968 22 7 5.6653 -0.5760 -3.3168 23 14 5.7049 -0.6188 -6.0875 24 1 6.1043 0.7495 -6.5041 25 1 6.9056 -1.4910 -6.0363 26 1 4.7337 -1.1704 -7.0661 27 6 1.5823 -0.0740 -2.5688 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.2490 -1.6318 1.1526 32 1 4.7535 -0.4583 3.2386 33 1 4.0341 -1.8345 2.3746 34 1 5.3905 -2.7409 4.1439 35 1 3.6922 -2.9444 4.6330 36 1 5.1220 -2.0744 6.4931 37 1 5.4923 -0.6392 5.5043 38 1 1.7139 0.6962 4.9069 39 1 3.4229 1.0431 4.5416 40 1 1.8827 -1.7992 -1.2115 41 1 3.7641 0.6700 -1.3001 42 1 4.2151 -1.0833 -1.4688 43 1 6.6302 -0.6320 -3.3986 44 1 0.8264 -0.6506 -3.1021 45 1 1.3263 0.9813 -2.4749 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970522485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:27 Heat of formation + Delta-G solvation = -63.148736 kcal Electronic energy + Delta-G solvation = -26877.179487 eV Core-core repulsion = 23023.480237 eV Total energy + Delta-G solvation = -3853.699249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.29133 -38.38184 -37.46060 -36.67524 -36.32614 -34.92321 -32.48659 -32.15119 -30.44589 -28.00963 -27.56798 -25.38132 -24.58628 -23.83257 -22.13334 -21.17990 -20.29013 -19.21857 -19.07312 -17.70256 -16.88302 -16.79395 -16.29275 -16.04922 -15.90361 -15.55770 -15.06329 -14.92499 -14.36345 -14.10101 -13.88831 -13.72889 -13.53300 -13.36384 -13.04481 -12.51188 -12.49334 -12.34467 -12.32142 -12.18177 -11.87586 -11.80939 -11.70526 -11.42416 -11.36539 -11.35349 -11.12057 -10.94809 -10.78354 -10.62153 -10.40501 -10.02149 -9.83646 -9.70847 -9.44636 -8.89762 -8.83787 -6.91432 -5.83530 -3.14484 -0.32140 2.29737 2.57738 3.14880 3.32631 3.35390 3.40943 3.42445 3.57213 4.00608 4.14965 4.26178 4.32472 4.40934 4.50389 4.71456 4.81764 4.97009 5.10517 5.11506 5.18586 5.21556 5.24864 5.40301 5.48105 5.49116 5.59868 5.62321 5.71939 5.75524 5.88183 5.97393 6.18292 6.30276 6.35579 6.52173 6.60273 6.73278 7.16476 7.28801 7.50699 7.55012 7.92866 8.22911 8.99729 9.65773 10.55583 11.34165 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019438 B = 0.002679 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.143593 B =10447.255809 C =11424.002270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.150 3.850 3 H 0.088 0.912 4 N -0.715 5.715 5 C 0.523 3.477 6 O -0.538 6.538 7 C -0.098 4.098 8 H 0.117 0.883 9 C -0.138 4.138 10 C -0.108 4.108 11 C -0.605 4.605 12 S 2.417 3.583 13 O -0.938 6.938 14 O -0.942 6.942 15 C -0.583 4.583 16 C -0.147 4.147 17 C 0.174 3.826 18 N -0.613 5.613 19 C -0.224 4.224 20 H 0.080 0.920 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.129 3.871 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.400 0.600 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.088 0.912 41 H 0.027 0.973 42 H 0.067 0.933 43 H 0.253 0.747 44 H 0.044 0.956 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.644 -4.236 17.848 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.045 3.955 3 H 0.106 0.894 4 N -0.365 5.365 5 C 0.307 3.693 6 O -0.414 6.414 7 C -0.120 4.120 8 H 0.135 0.865 9 C -0.176 4.176 10 C -0.146 4.146 11 C -0.735 4.735 12 S 2.600 3.400 13 O -0.935 6.935 14 O -0.940 6.940 15 C -0.713 4.713 16 C -0.167 4.167 17 C 0.048 3.952 18 N -0.339 5.339 19 C -0.352 4.352 20 H 0.098 0.902 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.002 3.998 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.235 0.765 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.106 0.894 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.004 -3.470 18.478 19.455 hybrid contribution 1.105 -0.180 -1.701 2.037 sum -3.899 -3.650 16.777 17.606 Atomic orbital electron populations 1.22139 0.95627 1.01814 1.02151 1.21128 0.93536 0.97611 0.83238 0.89398 1.46091 1.66662 1.14125 1.09614 1.20116 0.77760 0.87209 0.84220 1.90704 1.50110 1.15793 1.84828 1.21086 0.99684 0.98071 0.93170 0.86475 1.21804 0.94480 1.00716 1.00604 1.21282 1.04477 0.97745 0.91086 1.30264 1.21840 1.12743 1.08620 1.08049 0.78081 0.76551 0.77349 1.93587 1.58861 1.57466 1.83588 1.93604 1.84775 1.62250 1.53326 1.30154 1.14206 1.11469 1.15423 1.23845 1.00976 0.99674 0.92244 1.22196 0.91463 0.98166 0.83328 1.45936 1.02667 1.83135 1.02111 1.19033 0.89836 1.42881 0.83403 0.90222 1.24811 0.95868 1.02361 0.97300 1.69824 1.04141 1.56258 1.26429 0.86141 0.78970 0.77489 0.83442 1.21619 1.21702 1.20547 1.22509 0.89802 0.96756 0.90688 0.91361 0.92662 0.92804 0.76525 0.89537 0.88515 0.88737 0.89407 0.84710 0.84627 0.83944 0.84060 0.89364 0.95546 0.91467 0.93676 0.93761 0.94762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.29 37.16 0.35 -1.63 16 2 C 0.15 2.11 2.42 -67.93 -0.16 1.94 16 3 H 0.09 1.47 7.37 -51.93 -0.38 1.08 16 4 N -0.71 -8.25 4.88 -53.81 -0.26 -8.51 16 5 C 0.52 6.29 7.11 -10.99 -0.08 6.21 16 6 O -0.54 -8.55 15.60 5.56 0.09 -8.46 16 7 C -0.10 -0.79 2.36 -91.94 -0.22 -1.01 16 8 H 0.12 0.73 8.01 -51.93 -0.42 0.32 16 9 C -0.14 -0.89 4.90 -27.13 -0.13 -1.02 16 10 C -0.11 -0.53 5.73 -26.92 -0.15 -0.69 16 11 C -0.61 -2.96 6.34 37.18 0.24 -2.73 16 12 S 2.42 18.81 5.31 -107.50 -0.57 18.24 16 13 O -0.94 -10.06 17.94 -57.82 -1.04 -11.09 16 14 O -0.94 -10.89 18.11 -57.82 -1.05 -11.93 16 15 C -0.58 -4.62 4.94 37.18 0.18 -4.44 16 16 C -0.15 -2.44 3.50 -89.70 -0.31 -2.75 16 17 C 0.17 3.83 6.98 -2.97 -0.02 3.81 16 18 N -0.61 -15.19 3.70 -177.90 -0.66 -15.85 16 19 C -0.22 -6.17 10.70 -15.06 -0.16 -6.33 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 22 N -0.92 -26.56 11.51 55.49 0.64 -25.92 16 23 Si 0.91 21.73 29.56 -169.99 -5.02 16.71 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.13 2.48 7.56 -2.97 -0.02 2.46 16 28 H 0.07 0.83 7.43 -51.93 -0.39 0.45 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.40 3.61 7.89 -40.82 -0.32 3.29 16 32 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.10 0.60 7.23 -51.93 -0.38 0.22 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.38 8.01 -51.93 -0.42 -0.04 16 36 H 0.13 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.14 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.14 1.18 8.00 -51.93 -0.42 0.76 16 39 H 0.14 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.03 0.62 7.96 -51.93 -0.41 0.21 16 42 H 0.07 1.62 7.35 -51.93 -0.38 1.23 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.03 0.65 8.06 -51.93 -0.42 0.23 16 LS Contribution 371.91 15.07 5.60 5.60 Total: -1.00 -37.89 371.91 -10.14 -48.03 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.27 Total: -0.36 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -0.60 Total: -6.45 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.28 Total: -50.28 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -2.00 Total: -31.49 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 18.81 SS G_CDS: -0.57 Total: 18.24 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.89 -10.14 -48.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970522485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.119 kcal (2) G-P(sol) polarization free energy of solvation -37.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds