Wall clock time and date at job start Tue Mar 31 2020 07:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46963 * 2 1 4 4 N 1.46505 * 109.47109 * 239.99810 * 2 1 3 5 5 C 1.34774 * 119.99954 * 84.99939 * 4 2 1 6 6 O 1.21289 * 119.99950 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00199 * 179.97438 * 5 4 2 8 8 H 1.08994 * 109.38421 * 59.99912 * 7 5 4 9 9 C 1.52584 * 109.38581 * 179.78904 * 7 5 4 10 10 C 1.52588 * 110.64412 * 190.14085 * 9 7 5 11 11 C 1.53035 * 109.99020 * 290.01869 * 10 9 7 12 12 S 1.81667 * 108.99931 * 63.64353 * 11 10 9 13 13 O 1.42100 * 108.66326 * 60.03467 * 12 11 10 14 14 O 1.42100 * 108.66256 * 191.27854 * 12 11 10 15 15 C 1.53041 * 109.38348 * 300.21188 * 7 5 4 16 16 C 1.52995 * 109.47124 * 120.00123 * 2 1 3 17 17 C 1.53503 * 114.20769 * 299.99778 * 16 2 1 18 18 N 1.47066 * 87.98596 * 220.34643 * 17 16 2 19 19 C 1.36938 * 136.05640 * 207.07967 * 18 17 16 20 20 H 1.08004 * 119.99749 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99984 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99909 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99701 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47245 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46754 * 120.00489 * 23 21 19 26 26 H 1.48495 * 109.46700 * 240.00164 * 23 21 19 27 27 C 1.47060 * 87.88579 * 27.11915 * 18 17 16 28 28 H 1.08998 * 109.46963 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46849 * 300.00003 * 1 2 3 30 30 H 1.08997 * 109.46991 * 60.00690 * 1 2 3 31 31 H 0.97003 * 120.00187 * 265.00061 * 4 2 1 32 32 H 1.08999 * 109.24445 * 310.44581 * 9 7 5 33 33 H 1.09003 * 109.24403 * 69.88656 * 9 7 5 34 34 H 1.09004 * 109.38262 * 50.17684 * 10 9 7 35 35 H 1.08999 * 109.38968 * 169.95676 * 10 9 7 36 36 H 1.09003 * 109.55395 * 183.50139 * 11 10 9 37 37 H 1.09003 * 109.54657 * 303.69021 * 11 10 9 38 38 H 1.09000 * 109.54619 * 296.04631 * 15 7 5 39 39 H 1.08996 * 109.54631 * 56.33770 * 15 7 5 40 40 H 1.08999 * 113.41467 * 73.19995 * 16 2 1 41 41 H 1.09000 * 113.46355 * 105.56595 * 17 16 2 42 42 H 1.09003 * 113.46309 * 335.13041 * 17 16 2 43 43 H 0.97003 * 119.99575 * 179.97438 * 22 21 19 44 44 H 1.09006 * 113.47077 * 87.66003 * 27 18 17 45 45 H 1.08996 * 113.47134 * 218.09481 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1471 -0.0184 -2.3572 6 8 1.8582 1.1583 -2.4118 7 6 2.6500 -0.7286 -3.5875 8 1 1.9769 -1.5505 -3.8312 9 6 2.6954 0.2522 -4.7555 10 6 2.9579 -0.4838 -6.0661 11 6 4.3945 -1.0106 -6.0916 12 16 4.5995 -2.2341 -4.7645 13 8 3.6853 -3.2997 -4.9833 14 8 5.9835 -2.5233 -4.6225 15 6 4.0509 -1.2823 -3.3173 16 6 2.0400 -0.7213 1.2492 17 6 1.5899 -0.0846 2.5714 18 7 2.9391 -0.3445 3.0959 19 6 3.4927 -0.5603 4.3296 20 1 2.8668 -0.5604 5.2098 21 6 4.8583 -0.7788 4.4490 22 7 5.6211 -0.7781 3.3764 23 14 5.6133 -1.0738 6.1320 24 1 4.5498 -1.0245 7.1672 25 1 6.2658 -2.4075 6.1548 26 1 6.6247 -0.0231 6.4117 27 6 3.4321 -0.2699 1.7124 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 2.2491 -1.6319 -1.1526 32 1 1.7417 0.7758 -4.8222 33 1 3.4918 0.9767 -4.5854 34 1 2.2643 -1.3199 -6.1567 35 1 2.8102 0.2007 -6.9013 36 1 4.5937 -1.4803 -7.0548 37 1 5.0887 -0.1843 -5.9383 38 1 4.7408 -0.4576 -3.1386 39 1 4.0235 -1.9330 -2.4433 40 1 1.9118 -1.8029 1.2075 41 1 0.8096 -0.6494 3.0816 42 1 1.3548 0.9762 2.4845 43 1 6.5754 -0.9305 3.4599 44 1 3.6878 0.7416 1.3966 45 1 4.2182 -0.9920 1.4921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970522486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:33 Heat of formation + Delta-G solvation = -59.141535 kcal Electronic energy + Delta-G solvation = -26968.956313 eV Core-core repulsion = 23115.430829 eV Total energy + Delta-G solvation = -3853.525484 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.29997 -38.52553 -37.44206 -36.64071 -36.30296 -34.92303 -32.79735 -32.09313 -30.22169 -28.06581 -27.60301 -25.31387 -24.48448 -23.93586 -22.22632 -20.98907 -20.29512 -19.23329 -19.10474 -17.64891 -16.86066 -16.78159 -16.49637 -16.07590 -15.88536 -15.63813 -14.92515 -14.67035 -14.36700 -14.33182 -13.88560 -13.76101 -13.42200 -13.35612 -13.12344 -12.55844 -12.44347 -12.32475 -12.29571 -12.07459 -11.86152 -11.75785 -11.74039 -11.45128 -11.35026 -11.28449 -11.20447 -10.96562 -10.81242 -10.69012 -10.40921 -10.01713 -9.81574 -9.67646 -9.25676 -8.90118 -8.85157 -6.91838 -5.80551 -3.13105 -0.32243 2.26457 2.59186 3.13507 3.33840 3.36987 3.42125 3.44918 3.58461 4.09029 4.10940 4.23723 4.35352 4.41966 4.45583 4.71608 4.83921 4.93413 5.05202 5.15533 5.20526 5.21295 5.28775 5.33821 5.47594 5.49899 5.63092 5.66912 5.73220 5.83433 5.89421 5.98562 6.17699 6.31629 6.36223 6.49615 6.60676 6.73257 7.16944 7.29497 7.50491 7.54623 7.93976 8.21567 9.00313 9.66860 10.60074 11.37063 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014479 B = 0.003073 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.310248 B = 9108.631989 C =10516.806125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.153 3.847 3 H 0.088 0.912 4 N -0.715 5.715 5 C 0.525 3.475 6 O -0.538 6.538 7 C -0.096 4.096 8 H 0.117 0.883 9 C -0.124 4.124 10 C -0.109 4.109 11 C -0.606 4.606 12 S 2.422 3.578 13 O -0.934 6.934 14 O -0.938 6.938 15 C -0.603 4.603 16 C -0.154 4.154 17 C 0.131 3.869 18 N -0.611 5.611 19 C -0.218 4.218 20 H 0.082 0.918 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.913 3.087 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.162 3.838 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.400 0.600 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.092 0.908 41 H 0.041 0.959 42 H 0.034 0.966 43 H 0.253 0.747 44 H 0.024 0.976 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.327 -0.431 -21.011 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.106 0.894 4 N -0.365 5.365 5 C 0.309 3.691 6 O -0.415 6.415 7 C -0.119 4.119 8 H 0.134 0.866 9 C -0.162 4.162 10 C -0.147 4.147 11 C -0.736 4.736 12 S 2.604 3.396 13 O -0.932 6.932 14 O -0.935 6.935 15 C -0.732 4.732 16 C -0.175 4.175 17 C 0.004 3.996 18 N -0.336 5.336 19 C -0.346 4.346 20 H 0.100 0.900 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.743 3.257 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.037 3.963 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.234 0.766 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.110 0.890 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.042 0.958 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.941 -0.533 -20.803 21.937 hybrid contribution 0.540 0.313 1.063 1.233 sum -6.401 -0.220 -19.740 20.753 Atomic orbital electron populations 1.22126 0.95521 1.01859 1.02136 1.21042 0.93571 0.97464 0.83077 0.89362 1.46120 1.66509 1.14156 1.09711 1.20103 0.77593 0.87162 0.84241 1.90706 1.50331 1.15625 1.84849 1.21068 0.94622 1.00457 0.95712 0.86551 1.21568 1.05878 0.97725 0.91000 1.21299 0.92127 1.01887 0.99374 1.30279 1.06253 1.17961 1.19071 1.07989 0.75348 0.77441 0.78861 1.93594 1.65666 1.49563 1.84344 1.93624 1.31496 1.83097 1.85248 1.30377 1.05615 1.15743 1.21456 1.23652 1.01589 0.99788 0.92429 1.22309 0.90208 0.96762 0.90355 1.45553 1.02883 1.82323 1.02878 1.18986 0.91140 1.41635 0.82804 0.90037 1.24802 0.95877 1.02272 0.97502 1.69832 1.04605 1.55468 1.26781 0.86030 0.79113 0.77514 0.83015 1.20425 1.21629 1.21706 1.22104 0.92548 0.97923 0.83765 0.92635 0.91350 0.92764 0.76591 0.88490 0.89867 0.89609 0.89103 0.84768 0.84658 0.83803 0.83917 0.88999 0.94087 0.94876 0.93660 0.95843 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.29 37.16 0.35 -1.62 16 2 C 0.15 2.20 2.47 -67.93 -0.17 2.03 16 3 H 0.09 1.47 7.33 -51.93 -0.38 1.09 16 4 N -0.71 -8.63 4.95 -53.80 -0.27 -8.89 16 5 C 0.52 6.29 7.11 -10.99 -0.08 6.22 16 6 O -0.54 -8.28 15.45 5.55 0.09 -8.20 16 7 C -0.10 -0.78 2.35 -91.96 -0.22 -0.99 16 8 H 0.12 0.73 8.01 -51.93 -0.42 0.31 16 9 C -0.12 -0.85 4.37 -27.16 -0.12 -0.96 16 10 C -0.11 -0.53 5.73 -26.92 -0.15 -0.68 16 11 C -0.61 -2.93 6.35 37.18 0.24 -2.69 16 12 S 2.42 19.23 5.31 -107.50 -0.57 18.66 16 13 O -0.93 -10.03 17.94 -57.82 -1.04 -11.07 16 14 O -0.94 -11.42 18.10 -57.82 -1.05 -12.46 16 15 C -0.60 -4.57 5.55 37.18 0.21 -4.36 16 16 C -0.15 -2.65 3.66 -90.10 -0.33 -2.98 16 17 C 0.13 2.57 7.34 -8.51 -0.06 2.51 16 18 N -0.61 -15.52 3.78 -184.77 -0.70 -16.21 16 19 C -0.22 -6.11 10.75 -15.06 -0.16 -6.27 16 20 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 22 N -0.92 -27.19 11.51 55.49 0.64 -26.56 16 23 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 C 0.16 3.70 6.97 -8.51 -0.06 3.64 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.40 4.00 7.96 -40.82 -0.32 3.67 16 32 H 0.10 0.73 7.73 -51.93 -0.40 0.32 16 33 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.09 0.38 8.01 -51.93 -0.42 -0.04 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.14 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.14 1.03 7.45 -51.93 -0.39 0.64 16 40 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.03 0.64 8.10 -51.93 -0.42 0.22 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.02 0.56 7.93 -51.93 -0.41 0.15 16 45 H 0.07 1.76 7.12 -51.93 -0.37 1.39 16 LS Contribution 371.82 15.07 5.60 5.60 Total: -1.00 -38.21 371.82 -10.24 -48.45 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.26 Total: 0.13 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -0.66 Total: -6.50 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.33 Total: -51.66 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -2.00 Total: -31.73 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 19.23 SS G_CDS: -0.57 Total: 18.66 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.21 -10.24 -48.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970522486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.696 kcal (2) G-P(sol) polarization free energy of solvation -38.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds