Wall clock time and date at job start Tue Mar 31 2020 07:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47222 * 2 1 4 4 N 1.46494 * 109.46933 * 239.99486 * 2 1 3 5 5 C 1.34775 * 120.00114 * 85.00614 * 4 2 1 6 6 O 1.21285 * 119.99942 * 359.97438 * 5 4 2 7 7 C 1.50704 * 120.00227 * 180.02562 * 5 4 2 8 8 H 1.08995 * 109.38562 * 60.20331 * 7 5 4 9 9 C 1.52590 * 109.29644 * 300.46854 * 7 5 4 10 10 C 1.52579 * 110.64296 * 169.91155 * 9 7 5 11 11 C 1.53037 * 109.98998 * 69.98476 * 10 9 7 12 12 S 1.81678 * 108.99877 * 296.35404 * 11 10 9 13 13 O 1.42100 * 108.66341 * 168.62446 * 12 11 10 14 14 O 1.42103 * 108.66006 * 299.96931 * 12 11 10 15 15 C 1.53035 * 109.38269 * 179.97438 * 7 5 4 16 16 C 1.53004 * 109.46690 * 119.99800 * 2 1 3 17 17 C 1.53947 * 113.73994 * 281.81324 * 16 2 1 18 18 N 1.47813 * 86.03624 * 222.08763 * 17 16 2 19 19 C 1.36939 * 134.45463 * 204.64151 * 18 17 16 20 20 H 1.08001 * 119.99500 * 179.86584 * 19 18 17 21 21 C 1.38809 * 120.00185 * 359.87302 * 19 18 17 22 22 N 1.31622 * 119.99843 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99933 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47008 * 90.00390 * 23 21 19 25 25 H 1.48502 * 109.47112 * 209.99616 * 23 21 19 26 26 H 1.48490 * 109.47227 * 330.00284 * 23 21 19 27 27 C 1.47581 * 91.05193 * 24.55173 * 18 17 16 28 28 H 1.09004 * 109.47033 * 300.07884 * 1 2 3 29 29 H 1.08998 * 109.47153 * 60.07336 * 1 2 3 30 30 H 1.09001 * 109.47396 * 180.02562 * 1 2 3 31 31 H 0.97004 * 120.00332 * 264.99899 * 4 2 1 32 32 H 1.08998 * 109.24101 * 49.60921 * 9 7 5 33 33 H 1.09008 * 109.24237 * 290.20674 * 9 7 5 34 34 H 1.09005 * 109.38646 * 309.82660 * 10 9 7 35 35 H 1.09001 * 109.38840 * 190.14375 * 10 9 7 36 36 H 1.09003 * 109.55138 * 56.20603 * 11 10 9 37 37 H 1.08998 * 109.55672 * 176.40430 * 11 10 9 38 38 H 1.09000 * 109.55275 * 63.84470 * 15 7 5 39 39 H 1.08996 * 109.54942 * 303.55269 * 15 7 5 40 40 H 1.08996 * 112.94745 * 53.41080 * 16 2 1 41 41 H 1.09003 * 113.77302 * 336.35515 * 17 16 2 42 42 H 1.09005 * 113.76687 * 107.74931 * 17 16 2 43 43 H 0.96997 * 119.99441 * 179.97438 * 22 21 19 44 44 H 1.08994 * 113.77107 * 221.15030 * 27 18 17 45 45 H 1.09006 * 113.76632 * 89.75197 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8583 1.1583 -2.4117 7 6 2.6488 -0.7291 -3.5877 8 1 1.9730 -1.5482 -3.8333 9 6 4.0426 -1.2871 -3.3147 10 6 4.4787 -2.2196 -4.4409 11 6 4.7485 -1.4130 -5.7131 12 16 3.2002 -0.6353 -6.2597 13 8 3.5014 0.3144 -7.2729 14 8 2.2467 -1.6557 -6.5220 15 6 2.6991 0.2558 -4.7579 16 6 2.0399 -0.7212 1.2493 17 6 1.9744 0.1331 2.5283 18 7 3.3098 -0.4178 2.8417 19 6 4.0194 -0.6142 3.9963 20 1 5.0066 -1.0504 3.9557 21 6 3.4699 -0.2529 5.2187 22 7 2.2669 0.2791 5.2679 23 14 4.4376 -0.5215 6.7937 24 1 5.2536 0.6846 7.0851 25 1 3.4973 -0.7661 7.9168 26 1 5.3312 -1.6963 6.6314 27 6 3.5701 -0.6731 1.4116 28 1 -0.3633 0.5151 0.8893 29 1 -0.3633 0.5127 -0.8906 30 1 -0.3634 -1.0277 0.0005 31 1 2.2490 -1.6319 -1.1525 32 1 4.0306 -1.8395 -2.3751 33 1 4.7509 -0.4622 -3.2368 34 1 3.6903 -2.9471 -4.6341 35 1 5.3877 -2.7436 -4.1452 36 1 5.4905 -0.6419 -5.5057 37 1 5.1204 -2.0765 -6.4938 38 1 3.4226 1.0420 -4.5422 39 1 1.7133 0.6962 -4.9066 40 1 1.6174 -1.7192 1.3661 41 1 1.9752 1.2068 2.3400 42 1 1.1953 -0.1773 3.2246 43 1 1.8828 0.5312 6.1222 44 1 4.0626 -1.6259 1.2179 45 1 4.0406 0.1633 0.8946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970522487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:39 Heat of formation + Delta-G solvation = -62.971634 kcal Electronic energy + Delta-G solvation = -26815.767996 eV Core-core repulsion = 22962.076427 eV Total energy + Delta-G solvation = -3853.691570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.34026 -38.36225 -37.50720 -36.73423 -36.37200 -34.93080 -32.52033 -32.13785 -30.52047 -28.08598 -27.52596 -25.36659 -24.62049 -23.86248 -22.18511 -21.17135 -20.29454 -19.26889 -19.13564 -17.77666 -16.94349 -16.83197 -16.25017 -16.10669 -15.92980 -15.62197 -15.13541 -14.80991 -14.43475 -14.14885 -13.94887 -13.76008 -13.62018 -13.42911 -13.13776 -12.55012 -12.42667 -12.37294 -12.35363 -12.14265 -11.94208 -11.86696 -11.65039 -11.48605 -11.45350 -11.27311 -11.17772 -10.92862 -10.72375 -10.67689 -10.40684 -10.11406 -9.87168 -9.66202 -9.47033 -8.94548 -8.83328 -6.92394 -5.81106 -3.13497 -0.37579 2.24529 2.53244 3.10447 3.27235 3.35844 3.40524 3.42743 3.51196 3.93957 4.07823 4.19157 4.25401 4.40955 4.44181 4.65948 4.74553 4.93583 5.03349 5.07481 5.13293 5.15355 5.32594 5.34668 5.40258 5.49315 5.53774 5.59012 5.63260 5.76465 5.94064 6.01506 6.20642 6.28521 6.38553 6.51587 6.56087 6.73201 7.17522 7.30639 7.50066 7.52631 7.93829 8.18981 9.00261 9.66700 10.55209 11.36094 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.025921 B = 0.002449 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.930949 B =11432.509395 C =12084.959197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.149 3.851 3 H 0.088 0.912 4 N -0.716 5.716 5 C 0.522 3.478 6 O -0.536 6.536 7 C -0.099 4.099 8 H 0.118 0.882 9 C -0.137 4.137 10 C -0.108 4.108 11 C -0.606 4.606 12 S 2.417 3.583 13 O -0.942 6.942 14 O -0.937 6.937 15 C -0.583 4.583 16 C -0.147 4.147 17 C 0.175 3.825 18 N -0.612 5.612 19 C -0.225 4.225 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.126 3.874 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.399 0.601 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.089 0.911 41 H 0.028 0.972 42 H 0.075 0.925 43 H 0.254 0.746 44 H 0.040 0.960 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.778 -5.816 -21.516 22.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.045 3.955 3 H 0.106 0.894 4 N -0.366 5.366 5 C 0.306 3.694 6 O -0.413 6.413 7 C -0.121 4.121 8 H 0.136 0.864 9 C -0.175 4.175 10 C -0.146 4.146 11 C -0.735 4.735 12 S 2.599 3.401 13 O -0.939 6.939 14 O -0.934 6.934 15 C -0.712 4.712 16 C -0.167 4.167 17 C 0.050 3.950 18 N -0.338 5.338 19 C -0.352 4.352 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.000 4.000 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.234 0.766 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.107 0.893 41 H 0.046 0.954 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.203 -4.995 -22.020 22.612 hybrid contribution 1.109 -0.273 1.666 2.020 sum 2.312 -5.269 -20.354 21.151 Atomic orbital electron populations 1.22113 0.95376 1.01867 1.02329 1.21150 0.93871 0.97475 0.83002 0.89419 1.46133 1.66662 1.14087 1.09711 1.20121 0.77880 0.87247 0.84200 1.90714 1.50015 1.15809 1.84770 1.21081 0.99625 0.98117 0.93256 0.86438 1.21785 0.94602 1.00600 1.00511 1.21275 1.04449 0.97761 0.91124 1.30268 1.21900 1.12740 1.08600 1.08062 0.78060 0.76568 0.77374 1.93608 1.84750 1.62113 1.53415 1.93593 1.58738 1.57488 1.83569 1.30155 1.14262 1.11428 1.15396 1.23865 0.97548 1.00787 0.94516 1.22231 0.89644 0.93870 0.89303 1.45987 1.16345 1.71872 0.99627 1.19013 0.98467 1.34931 0.82817 0.90320 1.24786 0.97056 1.01065 0.97524 1.69806 1.15332 1.47191 1.24456 0.86127 0.78781 0.77786 0.83095 1.21611 1.21587 1.20640 1.22530 0.93041 0.97559 0.86918 0.91040 0.92839 0.92675 0.76645 0.88644 0.89663 0.89364 0.88828 0.84679 0.84680 0.84096 0.83876 0.89279 0.95437 0.90682 0.93586 0.94175 0.95113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.44 37.16 0.35 -1.74 16 2 C 0.15 2.11 2.29 -67.93 -0.16 1.95 16 3 H 0.09 1.46 7.48 -51.93 -0.39 1.07 16 4 N -0.72 -7.81 4.75 -53.81 -0.26 -8.07 16 5 C 0.52 5.94 7.11 -10.98 -0.08 5.86 16 6 O -0.54 -8.30 15.60 5.55 0.09 -8.21 16 7 C -0.10 -0.72 2.36 -91.96 -0.22 -0.94 16 8 H 0.12 0.67 8.01 -51.93 -0.42 0.25 16 9 C -0.14 -0.72 4.90 -27.16 -0.13 -0.85 16 10 C -0.11 -0.42 5.73 -26.93 -0.15 -0.58 16 11 C -0.61 -2.47 6.35 37.18 0.24 -2.24 16 12 S 2.42 17.45 5.31 -107.50 -0.57 16.88 16 13 O -0.94 -10.41 18.10 -57.80 -1.05 -11.46 16 14 O -0.94 -9.60 17.94 -57.80 -1.04 -10.64 16 15 C -0.58 -4.28 4.94 37.18 0.18 -4.09 16 16 C -0.15 -2.45 3.35 -89.69 -0.30 -2.75 16 17 C 0.18 3.92 6.98 -2.84 -0.02 3.90 16 18 N -0.61 -15.17 3.70 -177.69 -0.66 -15.83 16 19 C -0.22 -6.18 10.70 -15.06 -0.16 -6.35 16 20 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 22 N -0.92 -26.87 11.39 55.49 0.63 -26.24 16 23 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 C 0.13 2.36 8.38 -2.96 -0.02 2.34 16 28 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.40 3.28 7.88 -40.82 -0.32 2.96 16 32 H 0.10 0.44 7.22 -51.93 -0.38 0.07 16 33 H 0.08 0.43 8.09 -51.92 -0.42 0.01 16 34 H 0.09 0.31 8.01 -51.93 -0.42 -0.11 16 35 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.13 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.14 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.14 1.13 8.00 -51.93 -0.42 0.71 16 40 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.03 0.64 8.03 -51.93 -0.42 0.23 16 42 H 0.07 1.86 7.17 -51.93 -0.37 1.49 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.03 0.59 8.10 -51.93 -0.42 0.17 16 LS Contribution 373.06 15.07 5.62 5.62 Total: -1.00 -38.05 373.06 -10.13 -48.18 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -7.31 Total: -1.22 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -0.57 Total: -5.79 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.28 Total: -50.14 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -2.00 Total: -30.31 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 17.45 SS G_CDS: -0.57 Total: 16.88 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -38.05 -10.13 -48.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970522487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.791 kcal (2) G-P(sol) polarization free energy of solvation -38.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds