Wall clock time and date at job start Tue Mar 31 2020 05:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.64224 * 2 1 4 4 C 1.54336 * 110.85016 * 236.83698 * 2 1 3 5 5 N 1.47024 * 107.26414 * 219.67251 * 4 2 1 6 6 C 1.36943 * 125.64558 * 178.84988 * 5 4 2 7 7 H 1.08002 * 119.99788 * 359.71061 * 6 5 4 8 8 C 1.38811 * 119.99622 * 179.97438 * 6 5 4 9 9 N 1.31614 * 120.00467 * 359.72375 * 8 6 5 10 10 Si 1.86801 * 119.99700 * 179.72266 * 8 6 5 11 11 H 1.48496 * 109.47031 * 59.99836 * 10 8 6 12 12 H 1.48497 * 109.47267 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47169 * 300.00118 * 10 8 6 14 14 C 1.47424 * 108.70428 * 358.58383 * 5 4 2 15 15 C 1.54907 * 104.83241 * 24.35838 * 14 5 4 16 16 H 1.09001 * 111.00141 * 204.91913 * 15 14 5 17 17 N 1.46493 * 111.00713 * 81.10285 * 15 14 5 18 18 C 1.34777 * 120.00332 * 86.45085 * 17 15 14 19 19 O 1.21279 * 119.99607 * 0.02562 * 18 17 15 20 20 C 1.50700 * 120.00228 * 180.02562 * 18 17 15 21 21 H 1.09000 * 110.00862 * 58.62564 * 20 18 17 22 22 C 1.53880 * 110.02841 * 297.19376 * 20 18 17 23 23 C 1.54156 * 108.70321 * 193.52992 * 22 20 18 24 24 S 1.82917 * 105.08753 * 27.90762 * 23 22 20 25 25 O 1.42101 * 109.35465 * 244.47461 * 24 23 22 26 26 O 1.42102 * 109.47482 * 111.31329 * 24 23 22 27 27 C 1.55045 * 110.02415 * 180.02562 * 20 18 17 28 28 H 1.09004 * 109.46780 * 296.85344 * 1 2 3 29 29 H 1.08995 * 109.47118 * 56.85877 * 1 2 3 30 30 H 1.08998 * 109.46887 * 176.86002 * 1 2 3 31 31 H 1.09003 * 109.47589 * 183.14164 * 3 2 1 32 32 H 1.09000 * 109.47312 * 303.14282 * 3 2 1 33 33 H 1.08999 * 109.47232 * 63.14277 * 3 2 1 34 34 H 1.08998 * 109.99389 * 100.19861 * 4 2 1 35 35 H 1.09003 * 109.77465 * 339.02545 * 4 2 1 36 36 H 0.96995 * 120.00147 * 180.02562 * 9 8 6 37 37 H 1.09001 * 110.36605 * 143.19805 * 14 5 4 38 38 H 1.08999 * 110.36611 * 265.51733 * 14 5 4 39 39 H 0.97009 * 120.00223 * 266.45369 * 17 15 14 40 40 H 1.09003 * 109.64483 * 313.38092 * 22 20 18 41 41 H 1.08999 * 109.64439 * 73.67304 * 22 20 18 42 42 H 1.09008 * 110.32082 * 269.00607 * 23 22 20 43 43 H 1.09000 * 110.32185 * 146.80805 * 23 22 20 44 44 H 1.08999 * 110.79070 * 279.99146 * 27 20 18 45 45 H 1.08998 * 110.79361 * 43.26509 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 6 2.0793 -0.7890 -1.2074 5 7 3.2445 -1.5519 -0.7364 6 6 4.0043 -2.3994 -1.4979 7 1 3.7611 -2.5550 -2.5386 8 6 5.0838 -3.0626 -0.9306 9 7 5.3803 -2.8729 0.3375 10 14 6.1155 -4.2246 -1.9673 11 1 6.7106 -3.4776 -3.1043 12 1 7.2000 -4.8017 -1.1331 13 1 5.2565 -5.3179 -2.4888 14 6 3.4633 -1.2486 0.6896 15 6 2.0790 -0.7934 1.2151 16 1 2.1851 -0.1483 2.0873 17 7 1.2275 -1.9462 1.5186 18 6 1.2979 -2.5362 2.7283 19 8 2.0659 -2.1124 3.5658 20 6 0.4224 -3.7225 3.0403 21 1 0.6166 -4.5263 2.3302 22 6 -1.0599 -3.3132 2.9823 23 6 -1.9062 -4.4283 3.6278 24 16 -0.7971 -5.2231 4.8461 25 8 -0.5588 -6.5692 4.4581 26 8 -1.2539 -4.9358 6.1606 27 6 0.6900 -4.2142 4.4861 28 1 -0.3633 0.4642 0.9169 29 1 -0.3633 0.5618 -0.8604 30 1 -0.3633 -1.0261 -0.0563 31 1 3.1577 1.4101 -0.0563 32 1 1.6717 1.9699 -0.8605 33 1 1.7630 1.9354 0.9168 34 1 2.3814 -0.1003 -1.9963 35 1 1.3155 -1.4713 -1.5804 36 1 6.1349 -3.3360 0.7338 37 1 3.7961 -2.1405 1.2204 38 1 4.1932 -0.4465 0.7992 39 1 0.6130 -2.2850 0.8488 40 1 -1.2043 -2.3809 3.5282 41 1 -1.3623 -3.1781 1.9438 42 1 -2.2195 -5.1504 2.8737 43 1 -2.7752 -4.0020 4.1289 44 1 1.5912 -4.8261 4.5261 45 1 0.7655 -3.3718 5.1736 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974797178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:49 Heat of formation + Delta-G solvation = -80.975085 kcal Electronic energy + Delta-G solvation = -27823.199783 eV Core-core repulsion = 23968.727525 eV Total energy + Delta-G solvation = -3854.472258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.06078 -38.31642 -37.20165 -36.24699 -35.82113 -33.91177 -33.10197 -30.76714 -30.29677 -28.35597 -27.08503 -25.78281 -25.58222 -23.54817 -22.50338 -20.47944 -19.77426 -19.02519 -18.77226 -17.55005 -17.07056 -16.76025 -16.03985 -15.78320 -15.75623 -14.94998 -14.68034 -14.53630 -14.14857 -13.93636 -13.83876 -13.70527 -13.22377 -12.85925 -12.72660 -12.47159 -12.35214 -12.25896 -12.18683 -12.09427 -11.96037 -11.82165 -11.39061 -11.32375 -11.24447 -11.05944 -10.98124 -10.80580 -10.57343 -10.47047 -10.28493 -10.02651 -9.87745 -9.74301 -9.51892 -8.72998 -8.46362 -6.86753 -5.67589 -3.11108 -0.16326 2.29358 2.86747 3.35101 3.37184 3.41919 3.42970 3.44026 3.82652 4.04329 4.29807 4.40037 4.44817 4.54799 4.70157 4.88367 5.06246 5.15467 5.20104 5.25129 5.27833 5.38668 5.47188 5.55460 5.59614 5.70644 5.74175 5.79144 5.94385 6.02486 6.09859 6.16604 6.32702 6.42371 6.52766 6.63223 6.65963 6.89989 7.42202 7.57154 7.79793 7.91084 8.34207 8.55014 9.17466 9.78988 10.42517 11.34889 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012168 B = 0.004034 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.546302 B = 6939.384815 C = 8408.062733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.129 4.129 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.228 4.228 7 H 0.076 0.924 8 C -0.007 4.007 9 N -0.917 5.917 10 Si 0.912 3.088 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.145 3.855 15 C 0.123 3.877 16 H 0.086 0.914 17 N -0.699 5.699 18 C 0.529 3.471 19 O -0.532 6.532 20 C -0.114 4.114 21 H 0.122 0.878 22 C -0.106 4.106 23 C -0.592 4.592 24 S 2.387 3.613 25 O -0.936 6.936 26 O -0.940 6.940 27 C -0.562 4.562 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.023 0.977 35 H 0.021 0.979 36 H 0.253 0.747 37 H 0.114 0.886 38 H 0.020 0.980 39 H 0.396 0.604 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.145 0.855 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.189 2.292 4.157 16.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.088 4.088 3 C -0.186 4.186 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.356 4.356 7 H 0.094 0.906 8 C -0.203 4.203 9 N -0.565 5.565 10 Si 0.743 3.257 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.020 3.980 15 C 0.018 3.982 16 H 0.104 0.896 17 N -0.349 5.349 18 C 0.312 3.688 19 O -0.408 6.408 20 C -0.137 4.137 21 H 0.140 0.860 22 C -0.145 4.145 23 C -0.721 4.721 24 S 2.571 3.429 25 O -0.933 6.933 26 O -0.937 6.937 27 C -0.692 4.692 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.132 0.868 38 H 0.038 0.962 39 H 0.231 0.769 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.163 0.837 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.598 1.711 5.435 16.607 hybrid contribution 0.517 -0.127 -1.630 1.715 sum -15.081 1.584 3.806 15.634 Atomic orbital electron populations 1.21725 0.94654 1.01110 1.01393 1.21844 0.94804 0.95795 0.96390 1.21692 1.01985 0.94064 1.00898 1.21406 0.90357 0.92926 0.93595 1.44458 1.30889 1.50016 1.07322 1.18979 1.06714 1.17003 0.92893 0.90626 1.24783 0.98721 1.00498 0.96328 1.69779 1.30083 1.45865 1.10797 0.86198 0.79861 0.80672 0.78993 1.21238 1.21574 1.21203 1.22320 0.89133 1.01432 0.85130 1.22544 0.93449 0.86003 0.96190 0.89629 1.45785 1.42168 1.32696 1.14226 1.19680 0.83181 0.83433 0.82493 1.90711 1.38668 1.63926 1.47505 1.22039 0.95329 0.99953 0.96395 0.86031 1.21883 0.90298 0.97989 1.04286 1.30494 1.13633 1.10841 1.17131 1.09101 0.79848 0.77057 0.76882 1.93633 1.84255 1.31329 1.84099 1.93611 1.79638 1.86081 1.34394 1.30559 1.19320 1.15668 1.03675 0.92759 0.92650 0.92984 0.91743 0.92672 0.93065 0.95868 0.96108 0.93577 0.86798 0.96235 0.76874 0.89061 0.88278 0.84240 0.84199 0.83716 0.83291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.07 37.16 0.30 -1.19 16 2 C -0.09 -1.32 0.80 -152.67 -0.12 -1.44 16 3 C -0.13 -1.80 8.39 37.16 0.31 -1.49 16 4 C 0.14 2.69 6.42 -3.06 -0.02 2.67 16 5 N -0.60 -14.33 3.39 -170.06 -0.58 -14.90 16 6 C -0.23 -6.08 10.27 -15.06 -0.15 -6.23 16 7 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 9 N -0.92 -26.50 10.09 55.49 0.56 -25.94 16 10 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 14 C 0.15 3.40 5.28 -2.53 -0.01 3.38 16 15 C 0.12 2.18 2.56 -65.78 -0.17 2.01 16 16 H 0.09 1.54 7.63 -51.93 -0.40 1.15 16 17 N -0.70 -10.60 4.64 -51.73 -0.24 -10.84 16 18 C 0.53 8.15 7.14 -10.99 -0.08 8.07 16 19 O -0.53 -10.33 15.52 5.56 0.09 -10.24 16 20 C -0.11 -1.22 2.96 -90.23 -0.27 -1.49 16 21 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 22 C -0.11 -0.75 5.69 -25.67 -0.15 -0.89 16 23 C -0.59 -3.52 7.26 37.76 0.27 -3.25 16 24 S 2.39 22.44 6.10 -107.50 -0.66 21.79 16 25 O -0.94 -12.18 18.15 -57.73 -1.05 -13.22 16 26 O -0.94 -11.92 18.15 -57.73 -1.05 -12.97 16 27 C -0.56 -5.83 6.20 38.24 0.24 -5.60 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.54 6.36 -51.93 -0.33 0.21 16 31 H 0.06 1.05 7.59 -51.93 -0.39 0.65 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.02 0.45 7.84 -51.93 -0.41 0.04 16 35 H 0.02 0.38 7.77 -51.93 -0.40 -0.02 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.11 3.12 5.87 -51.93 -0.30 2.82 16 38 H 0.02 0.50 7.81 -51.93 -0.41 0.10 16 39 H 0.40 5.11 6.89 -40.82 -0.28 4.82 16 40 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.14 0.63 8.14 -51.92 -0.42 0.21 16 43 H 0.14 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.14 1.53 8.14 -51.93 -0.42 1.10 16 45 H 0.15 1.56 7.63 -51.93 -0.40 1.16 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -36.97 366.34 -9.46 -46.43 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.09 Total: 3.39 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 0.06 Total: -5.74 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.26 Total: -51.68 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -2.01 Total: -36.44 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 22.44 SS G_CDS: -0.66 Total: 21.79 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.97 -9.46 -46.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974797178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.545 kcal (2) G-P(sol) polarization free energy of solvation -36.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds