Wall clock time and date at job start Tue Mar 31 2020 05:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 110.64313 * 2 1 4 4 C 1.54327 * 110.71915 * 123.14433 * 2 1 3 5 5 N 1.47025 * 107.27079 * 96.17114 * 4 2 1 6 6 C 1.36936 * 125.64549 * 178.90293 * 5 4 2 7 7 H 1.08002 * 120.00281 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00187 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99670 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00427 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46991 * 60.00301 * 10 8 6 12 12 H 1.48497 * 109.47456 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47302 * 300.00250 * 10 8 6 14 14 C 1.47424 * 108.70368 * 358.93729 * 5 4 2 15 15 C 1.55160 * 110.72078 * 236.85924 * 2 1 3 16 16 H 1.08999 * 111.00302 * 35.20850 * 15 2 1 17 17 N 1.46502 * 111.00500 * 159.06863 * 15 2 1 18 18 C 1.34782 * 119.99701 * 205.00253 * 17 15 2 19 19 O 1.21286 * 119.99757 * 359.97438 * 18 17 15 20 20 C 1.50697 * 119.99917 * 179.97438 * 18 17 15 21 21 H 1.09006 * 110.28151 * 325.69844 * 20 18 17 22 22 C 1.54159 * 110.32070 * 87.81317 * 20 18 17 23 23 C 1.54012 * 108.63294 * 146.73161 * 22 20 18 24 24 C 1.55049 * 106.69662 * 312.94918 * 23 22 20 25 25 S 1.82918 * 110.31722 * 203.58266 * 20 18 17 26 26 O 1.42091 * 109.35561 * 352.37101 * 25 20 18 27 27 O 1.42102 * 109.34948 * 125.44185 * 25 20 18 28 28 H 1.09002 * 109.47153 * 60.69891 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.70082 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.70063 * 1 2 3 31 31 H 1.09001 * 109.47150 * 59.30094 * 3 2 1 32 32 H 1.09001 * 109.46992 * 179.29916 * 3 2 1 33 33 H 1.08997 * 109.47184 * 299.29916 * 3 2 1 34 34 H 1.09008 * 109.88100 * 215.58517 * 4 2 1 35 35 H 1.08991 * 109.88317 * 336.59355 * 4 2 1 36 36 H 0.96999 * 120.00422 * 179.97438 * 9 8 6 37 37 H 1.09000 * 110.36236 * 142.97152 * 14 5 4 38 38 H 1.08997 * 110.36512 * 265.18110 * 14 5 4 39 39 H 0.96996 * 120.00097 * 24.99677 * 17 15 2 40 40 H 1.08997 * 109.64921 * 266.66635 * 22 20 18 41 41 H 1.09005 * 109.64818 * 26.95781 * 22 20 18 42 42 H 1.09001 * 110.03203 * 193.61562 * 23 22 20 43 43 H 1.09004 * 109.99380 * 72.26602 * 23 22 20 44 44 H 1.08996 * 110.78960 * 284.11856 * 24 23 22 45 45 H 1.09005 * 110.78787 * 160.65364 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4317 0.0000 4 6 2.0760 -0.7892 1.2086 5 7 2.3716 -2.1520 0.7426 6 6 2.8945 -3.1608 1.5067 7 1 3.1258 -2.9860 2.5471 8 6 3.1272 -4.4083 0.9442 9 7 2.8458 -4.6213 -0.3238 10 14 3.8399 -5.7848 1.9867 11 1 2.9270 -6.0684 3.1232 12 1 3.9908 -7.0070 1.1569 13 1 5.1677 -5.3734 2.5091 14 6 2.0125 -2.2521 -0.6838 15 6 2.0790 -0.7934 -1.2152 16 1 1.4395 -0.6627 -2.0882 17 7 3.4595 -0.4057 -1.5151 18 6 3.9479 -0.5626 -2.7615 19 8 3.2444 -1.0251 -3.6346 20 6 5.3678 -0.1633 -3.0702 21 1 5.6510 0.7100 -2.4824 22 6 6.3277 -1.3352 -2.7845 23 6 7.4877 -1.2790 -3.7960 24 6 6.8503 -1.0678 -5.1935 25 16 5.5556 0.1849 -4.8561 26 8 4.3612 -0.1778 -5.5348 27 8 6.0997 1.4865 -5.0274 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 0.5247 0.8837 30 1 -0.3634 -1.0276 0.0126 31 1 1.7065 1.9567 0.8837 32 1 3.1591 1.4095 0.0126 33 1 1.7269 1.9490 -0.8962 34 1 2.9869 -0.3181 1.5781 35 1 1.3273 -0.8198 2.0001 36 1 3.0087 -5.4929 -0.7171 37 1 2.7292 -2.8809 -1.2120 38 1 1.0046 -2.6520 -0.7940 39 1 4.0221 -0.0361 -0.8167 40 1 6.7186 -1.2499 -1.7706 41 1 5.7945 -2.2800 -2.8912 42 1 8.0449 -2.2157 -3.7775 43 1 8.1498 -0.4464 -3.5579 44 1 6.4068 -1.9934 -5.5603 45 1 7.5859 -0.6832 -5.9001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977604439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:26 Heat of formation + Delta-G solvation = -74.940433 kcal Electronic energy + Delta-G solvation = -28280.576620 eV Core-core repulsion = 24426.366044 eV Total energy + Delta-G solvation = -3854.210576 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -39.89241 -38.16267 -37.00217 -36.22702 -35.72569 -33.87743 -33.08299 -30.76768 -30.51280 -28.07403 -26.83811 -25.75610 -25.58641 -23.40881 -21.83063 -20.90289 -19.92371 -19.03476 -18.48708 -17.43477 -16.93953 -16.74809 -16.25623 -15.71618 -15.27798 -14.84395 -14.61337 -14.33765 -14.04300 -13.89627 -13.78688 -13.54524 -13.22611 -12.98660 -12.59596 -12.35478 -12.21962 -12.03245 -11.99345 -11.90549 -11.89812 -11.76924 -11.31723 -11.26213 -11.18977 -11.03134 -10.81295 -10.74205 -10.44744 -10.35272 -10.26194 -10.00059 -9.85515 -9.72931 -9.51657 -8.73039 -8.40993 -6.86130 -5.67870 -3.11073 -0.04511 2.45695 2.81613 3.28916 3.35089 3.40434 3.41795 3.62026 4.04863 4.27182 4.43903 4.46910 4.53316 4.69326 4.81324 4.96607 5.00523 5.22253 5.26023 5.30180 5.39663 5.47499 5.57928 5.59334 5.70490 5.77746 5.86426 5.91395 5.99938 6.08299 6.15764 6.23023 6.37411 6.46874 6.57338 6.66671 6.70254 6.93737 7.44049 7.57245 7.79803 7.89947 8.33562 8.53325 9.17366 9.78653 10.43153 11.34563 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012100 B = 0.004744 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.465273 B = 5900.812860 C = 7442.010718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 C -0.132 4.132 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.225 4.225 7 H 0.076 0.924 8 C -0.008 4.008 9 N -0.918 5.918 10 Si 0.912 3.088 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.147 3.853 15 C 0.120 3.880 16 H 0.092 0.908 17 N -0.690 5.690 18 C 0.531 3.469 19 O -0.504 6.504 20 C -0.594 4.594 21 H 0.153 0.847 22 C -0.102 4.102 23 C -0.118 4.118 24 C -0.591 4.591 25 S 2.406 3.594 26 O -0.893 6.893 27 O -0.941 6.941 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.021 0.979 35 H 0.024 0.976 36 H 0.253 0.747 37 H 0.113 0.887 38 H 0.022 0.978 39 H 0.398 0.602 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.142 0.858 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.581 10.587 -4.929 13.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 C -0.190 4.190 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.353 4.353 7 H 0.093 0.907 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.743 3.257 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.021 3.979 15 C 0.015 3.985 16 H 0.110 0.890 17 N -0.341 5.341 18 C 0.313 3.687 19 O -0.379 6.379 20 C -0.704 4.704 21 H 0.171 0.829 22 C -0.141 4.141 23 C -0.156 4.156 24 C -0.720 4.720 25 S 2.585 3.415 26 O -0.890 6.890 27 O -0.938 6.938 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.042 0.958 36 H 0.064 0.936 37 H 0.131 0.869 38 H 0.040 0.960 39 H 0.233 0.767 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.105 0.895 44 H 0.160 0.840 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.649 10.668 -6.146 13.992 hybrid contribution 1.096 -1.131 1.686 2.307 sum 7.746 9.536 -4.461 13.070 Atomic orbital electron populations 1.21691 0.93468 1.02516 1.00951 1.21858 0.96117 0.94573 0.96367 1.21732 1.00387 0.95474 1.01388 1.21403 0.96437 0.86779 0.93657 1.44453 1.74192 1.06665 1.07377 1.18983 1.34138 0.89303 0.92873 0.90663 1.24776 1.01753 0.97545 0.96365 1.69790 1.53600 1.22334 1.10859 0.86201 0.78825 0.81643 0.79054 1.21256 1.21611 1.21313 1.22399 1.00237 0.90261 0.85013 1.22706 0.80984 0.98278 0.96582 0.88978 1.45694 1.14685 1.63789 1.09895 1.18971 0.85854 0.79947 0.83914 1.90941 1.58452 1.43221 1.45310 1.30734 1.02303 1.09227 1.28114 0.82917 1.21926 0.93701 0.96639 1.01846 1.22232 0.98185 1.05564 0.89638 1.30679 1.17459 1.18601 1.05300 1.08910 0.77526 0.77057 0.78046 1.93708 1.42579 1.83653 1.69080 1.93604 1.80365 1.35499 1.84342 0.92995 0.92683 0.91735 0.92681 0.92974 0.92750 0.96120 0.95845 0.93622 0.86917 0.96002 0.76722 0.88199 0.88550 0.88125 0.89518 0.84015 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.41 37.16 0.31 -1.61 16 2 C -0.09 -1.42 0.80 -152.67 -0.12 -1.54 16 3 C -0.13 -1.70 8.11 37.16 0.30 -1.40 16 4 C 0.14 2.76 6.41 -3.06 -0.02 2.74 16 5 N -0.60 -14.40 3.40 -169.76 -0.58 -14.97 16 6 C -0.22 -5.96 10.27 -15.06 -0.15 -6.12 16 7 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -26.09 10.09 55.49 0.56 -25.53 16 10 Si 0.91 21.44 29.55 -169.99 -5.02 16.41 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.15 3.46 5.28 -2.27 -0.01 3.45 16 15 C 0.12 2.25 2.70 -65.52 -0.18 2.07 16 16 H 0.09 1.79 7.44 -51.93 -0.39 1.40 16 17 N -0.69 -11.48 4.54 -51.48 -0.23 -11.71 16 18 C 0.53 8.98 6.87 -10.98 -0.08 8.91 16 19 O -0.50 -10.56 13.98 -18.01 -0.25 -10.81 16 20 C -0.59 -7.14 3.60 -27.28 -0.10 -7.24 16 21 H 0.15 1.34 8.14 -51.93 -0.42 0.92 16 22 C -0.10 -1.08 5.95 -25.60 -0.15 -1.23 16 23 C -0.12 -0.91 6.48 -25.12 -0.16 -1.07 16 24 C -0.59 -5.04 7.31 38.24 0.28 -4.76 16 25 S 2.41 30.03 5.91 -107.50 -0.64 29.40 16 26 O -0.89 -15.48 15.48 -66.98 -1.04 -16.52 16 27 O -0.94 -13.37 18.15 -57.73 -1.05 -14.42 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.09 7.50 -51.93 -0.39 0.70 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.63 6.43 -51.93 -0.33 0.30 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.02 0.39 7.80 -51.92 -0.41 -0.02 16 35 H 0.02 0.46 7.84 -51.93 -0.41 0.06 16 36 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.11 3.07 5.87 -51.93 -0.31 2.76 16 38 H 0.02 0.57 7.76 -51.93 -0.40 0.16 16 39 H 0.40 5.79 7.16 -40.82 -0.29 5.50 16 40 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.10 1.24 7.85 -51.93 -0.41 0.83 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.14 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.14 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 363.30 15.07 5.47 5.47 Total: -1.00 -35.85 363.30 -10.05 -45.90 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -7.10 Total: 4.92 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -0.18 Total: -8.13 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.25 Total: -52.22 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -2.34 Total: -41.75 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 30.03 SS G_CDS: -0.64 Total: 29.40 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.85 -10.05 -45.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977604439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.039 kcal (2) G-P(sol) polarization free energy of solvation -35.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds