Wall clock time and date at job start Tue Mar 31 2020 06:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.99810 * 2 1 4 4 C 1.54319 * 109.88540 * 238.90371 * 2 1 3 5 5 H 1.08998 * 110.72198 * 144.40900 * 4 2 1 6 6 N 1.46502 * 110.71881 * 21.13764 * 4 2 1 7 7 C 1.36941 * 120.00171 * 154.99814 * 6 4 2 8 8 H 1.08004 * 119.99376 * 359.97438 * 7 6 4 9 9 C 1.38805 * 120.00187 * 180.02562 * 7 6 4 10 10 N 1.31625 * 120.00051 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00114 * 0.02562 * 9 7 6 12 12 H 1.48492 * 109.47334 * 89.99778 * 11 9 7 13 13 H 1.48497 * 109.47204 * 210.00064 * 11 9 7 14 14 H 1.48504 * 109.46747 * 329.99795 * 11 9 7 15 15 C 1.55154 * 102.94652 * 262.77735 * 4 2 1 16 16 C 1.55137 * 101.47971 * 324.33078 * 15 4 2 17 17 N 1.47020 * 109.88240 * 121.09598 * 2 1 3 18 18 C 1.34783 * 125.64611 * 300.43988 * 17 2 1 19 19 O 1.21274 * 120.00205 * 5.18124 * 18 17 2 20 20 C 1.50706 * 119.99624 * 184.90909 * 18 17 2 21 21 C 1.52588 * 109.23835 * 266.40155 * 20 18 17 22 22 C 1.53055 * 109.97601 * 169.67616 * 21 20 18 23 23 S 1.81671 * 108.96515 * 63.70503 * 22 21 20 24 24 O 1.42105 * 108.66186 * 191.35153 * 23 22 21 25 25 O 1.42105 * 108.66050 * 60.01561 * 23 22 21 26 26 C 1.81666 * 101.31033 * 305.68362 * 23 22 21 27 27 C 1.52589 * 109.23907 * 145.28941 * 20 18 17 28 28 H 1.09000 * 109.47269 * 300.35745 * 1 2 3 29 29 H 1.08996 * 109.46895 * 60.35965 * 1 2 3 30 30 H 1.08996 * 109.46783 * 180.35817 * 1 2 3 31 31 H 0.96996 * 120.00235 * 335.00353 * 6 4 2 32 32 H 0.96999 * 119.99565 * 179.97438 * 10 9 7 33 33 H 1.09000 * 111.00604 * 82.56715 * 15 4 2 34 34 H 1.08994 * 111.00395 * 206.42944 * 15 4 2 35 35 H 1.09002 * 110.49819 * 278.45054 * 16 15 4 36 36 H 1.09003 * 110.34139 * 156.06276 * 16 15 4 37 37 H 1.08996 * 109.24316 * 25.84417 * 20 18 17 38 38 H 1.08997 * 109.38892 * 289.87246 * 21 20 18 39 39 H 1.08997 * 109.38655 * 49.56324 * 21 20 18 40 40 H 1.08998 * 109.58030 * 303.84943 * 22 21 20 41 41 H 1.08997 * 109.63239 * 183.59152 * 22 21 20 42 42 H 1.09004 * 109.54832 * 294.44668 * 26 23 22 43 43 H 1.08992 * 109.55094 * 174.15077 * 26 23 22 44 44 H 1.08997 * 109.38760 * 310.43546 * 27 20 18 45 45 H 1.08996 * 109.38653 * 70.23238 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2426 5 1 2.9657 -0.2831 -1.6182 6 7 1.0293 -0.8026 -2.2875 7 6 1.3954 -0.9387 -3.6000 8 1 2.4403 -1.0065 -3.8649 9 6 0.4237 -0.9885 -4.5900 10 7 0.7757 -1.1189 -5.8516 11 14 -1.3833 -0.8692 -4.1320 12 1 -1.8027 0.5553 -4.1390 13 1 -2.1947 -1.6290 -5.1166 14 1 -1.5889 -1.4391 -2.7761 15 6 2.3519 -2.1695 -0.6924 16 6 2.8614 -1.8464 0.7369 17 7 2.0300 -0.7141 1.1839 18 6 1.7753 -0.3844 2.4657 19 8 1.0044 0.5170 2.7184 20 6 2.4440 -1.1401 3.5852 21 6 1.5308 -2.2740 4.0420 22 6 2.2882 -3.2048 4.9921 23 16 2.7443 -2.2786 6.4870 24 8 3.6641 -3.0564 7.2408 25 8 1.5571 -1.8062 7.1090 26 6 3.6294 -0.8622 5.7724 27 6 2.7291 -0.1823 4.7383 28 1 -0.3634 0.5194 0.8868 29 1 -0.3633 0.5082 -0.8932 30 1 -0.3633 -1.0276 0.0064 31 1 0.0910 -0.7413 -2.0496 32 1 0.0966 -1.1540 -6.5433 33 1 1.4453 -2.7736 -0.6604 34 1 3.1271 -2.6617 -1.2795 35 1 3.9124 -1.5587 0.7115 36 1 2.7179 -2.7048 1.3933 37 1 3.3837 -1.5586 3.2250 38 1 0.6655 -1.8567 4.5568 39 1 1.1948 -2.8402 3.1733 40 1 3.1895 -3.5726 4.5017 41 1 1.6519 -4.0467 5.2645 42 1 4.5427 -1.2090 5.2890 43 1 3.8792 -0.1526 6.5611 44 1 3.2274 0.7079 4.3545 45 1 1.7899 0.1043 5.2113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987109021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:18 Heat of formation + Delta-G solvation = -84.593734 kcal Electronic energy + Delta-G solvation = -27382.411993 eV Core-core repulsion = 23527.782819 eV Total energy + Delta-G solvation = -3854.629174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -40.62605 -38.36919 -37.41978 -36.49597 -36.39101 -34.44192 -32.39797 -31.88126 -30.94521 -29.87340 -28.27519 -25.59215 -24.16966 -23.67207 -22.80253 -21.77717 -19.73295 -19.23310 -18.90574 -18.08227 -17.32909 -17.26243 -16.79200 -16.08679 -15.97547 -15.63695 -15.11045 -14.52849 -14.44093 -14.28713 -13.98271 -13.78843 -13.51290 -13.29396 -13.07500 -12.84125 -12.65658 -12.52906 -12.39466 -12.28407 -12.22803 -12.14827 -11.94911 -11.75927 -11.53762 -11.48848 -11.26452 -11.16210 -10.95736 -10.63115 -10.49883 -10.45088 -10.15379 -9.78540 -9.60448 -9.06346 -8.64321 -7.42064 -5.89032 -3.26402 -0.41710 2.21866 2.45181 2.80209 3.22022 3.28829 3.31829 3.38152 3.50659 3.93196 4.04114 4.14508 4.16298 4.42815 4.48101 4.50090 4.69757 4.74345 4.79956 4.96262 5.05459 5.06541 5.11686 5.28127 5.28837 5.33004 5.38682 5.46102 5.55144 5.58129 5.65400 5.74396 5.80417 5.92462 6.06194 6.28090 6.38463 6.44781 6.48966 6.73008 7.51030 7.85355 8.07600 8.29703 9.06676 9.78928 9.97179 11.28738 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.029567 B = 0.002694 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.790183 B =10392.375342 C =10553.634016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.124 3.876 3 H 0.076 0.924 4 C 0.179 3.821 5 H 0.075 0.925 6 N -0.740 5.740 7 C -0.251 4.251 8 H 0.092 0.908 9 C 0.010 3.990 10 N -0.929 5.929 11 Si 0.879 3.121 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.277 1.277 15 C -0.154 4.154 16 C 0.093 3.907 17 N -0.608 5.608 18 C 0.535 3.465 19 O -0.534 6.534 20 C -0.125 4.125 21 C -0.102 4.102 22 C -0.601 4.601 23 S 2.414 3.586 24 O -0.944 6.944 25 O -0.933 6.933 26 C -0.601 4.601 27 C -0.094 4.094 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.368 0.632 32 H 0.261 0.739 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.093 0.907 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.044 -3.015 22.743 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.021 3.979 3 H 0.094 0.906 4 C 0.068 3.932 5 H 0.093 0.907 6 N -0.384 5.384 7 C -0.381 4.381 8 H 0.110 0.890 9 C -0.187 4.187 10 N -0.576 5.576 11 Si 0.708 3.292 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.203 1.203 15 C -0.195 4.195 16 C -0.030 4.030 17 N -0.341 5.341 18 C 0.323 3.677 19 O -0.411 6.411 20 C -0.146 4.146 21 C -0.140 4.140 22 C -0.730 4.730 23 S 2.596 3.404 24 O -0.941 6.941 25 O -0.930 6.930 26 C -0.731 4.731 27 C -0.132 4.132 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.204 0.796 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.155 0.845 41 H 0.158 0.842 42 H 0.153 0.847 43 H 0.157 0.843 44 H 0.111 0.889 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.546 -2.720 23.582 24.625 hybrid contribution -0.939 0.004 -0.766 1.212 sum 5.607 -2.716 22.817 23.652 Atomic orbital electron populations 1.22070 0.95043 1.02268 1.02774 1.21927 0.95139 0.96146 0.84729 0.90607 1.21149 0.93086 0.92237 0.86739 0.90671 1.42961 1.03526 1.88695 1.03212 1.19054 0.94875 1.43243 0.80894 0.89027 1.24654 0.97367 1.01565 0.95073 1.69692 1.32652 1.56364 0.98914 0.86660 0.86871 0.78083 0.77546 1.20800 1.21510 1.20276 1.23575 1.01916 1.01061 0.92924 1.22506 0.94723 0.88402 0.97350 1.48622 1.50007 1.30612 1.04903 1.19793 0.81954 0.83892 0.82092 1.90707 1.35622 1.31604 1.83143 1.21489 1.00809 0.96734 0.95617 1.21202 0.98128 0.94286 1.00400 1.30225 1.11219 1.12429 1.19116 1.08180 0.76389 0.78102 0.77757 1.93604 1.64505 1.68731 1.67270 1.93611 1.46390 1.80444 1.72568 1.30236 1.12424 1.19349 1.11060 1.21120 1.00414 0.98639 0.93072 0.91338 0.91070 0.92614 0.79579 0.92879 0.90734 0.90013 0.91226 0.91132 0.87970 0.88607 0.88750 0.84543 0.84224 0.84691 0.84306 0.88862 0.88433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 7.92 37.16 0.29 -2.38 16 2 C 0.12 1.90 3.51 -66.96 -0.23 1.66 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.18 3.04 3.48 -66.10 -0.23 2.81 16 5 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 6 N -0.74 -16.05 4.74 -51.66 -0.25 -16.29 16 7 C -0.25 -6.60 10.44 -15.06 -0.16 -6.76 16 8 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 9 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 10 N -0.93 -28.05 13.97 55.49 0.78 -27.27 16 11 Si 0.88 21.24 27.74 -169.99 -4.71 16.52 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 15 C -0.15 -2.13 6.78 -24.46 -0.17 -2.29 16 16 C 0.09 0.94 6.18 -2.41 -0.01 0.93 16 17 N -0.61 -7.56 3.08 -162.87 -0.50 -8.06 16 18 C 0.54 6.50 6.57 -10.98 -0.07 6.43 16 19 O -0.53 -8.38 15.17 5.56 0.08 -8.29 16 20 C -0.12 -0.96 1.69 -92.19 -0.16 -1.11 16 21 C -0.10 -0.70 5.01 -26.91 -0.13 -0.83 16 22 C -0.60 -2.82 6.35 37.19 0.24 -2.58 16 23 S 2.41 16.51 5.31 -107.50 -0.57 15.94 16 24 O -0.94 -9.55 18.10 -57.81 -1.05 -10.60 16 25 O -0.93 -10.03 17.93 -57.81 -1.04 -11.07 16 26 C -0.60 -2.86 6.35 37.18 0.24 -2.62 16 27 C -0.09 -0.67 4.54 -26.92 -0.12 -0.79 16 28 H 0.07 1.13 6.60 -51.93 -0.34 0.79 16 29 H 0.07 1.24 6.82 -51.93 -0.35 0.89 16 30 H 0.05 0.92 8.01 -51.93 -0.42 0.50 16 31 H 0.37 7.97 2.92 -40.82 -0.12 7.85 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.53 7.47 -51.93 -0.39 0.15 16 37 H 0.10 0.51 7.09 -51.93 -0.37 0.14 16 38 H 0.10 0.74 8.01 -51.93 -0.42 0.33 16 39 H 0.09 0.64 7.89 -51.93 -0.41 0.23 16 40 H 0.14 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 43 H 0.14 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 45 H 0.10 0.80 7.99 -51.93 -0.41 0.39 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -36.62 361.57 -9.47 -46.09 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -7.04 Total: 4.96 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -0.62 Total: -7.37 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.03 Total: -51.63 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -2.00 Total: -29.96 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.71 Total: 16.52 kcal Atomic # 16 Polarization: 16.51 SS G_CDS: -0.57 Total: 15.94 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.62 -9.47 -46.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987109021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.506 kcal (2) G-P(sol) polarization free energy of solvation -36.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds