Wall clock time and date at job start Tue Mar 31 2020 06:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.99810 * 2 1 4 4 C 1.54319 * 109.88540 * 238.90371 * 2 1 3 5 5 H 1.08998 * 110.72198 * 144.40900 * 4 2 1 6 6 N 1.46502 * 110.71881 * 21.13764 * 4 2 1 7 7 C 1.36941 * 120.00171 * 154.99814 * 6 4 2 8 8 H 1.08004 * 119.99376 * 359.97438 * 7 6 4 9 9 C 1.38805 * 120.00187 * 180.02562 * 7 6 4 10 10 N 1.31625 * 120.00051 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00114 * 0.02562 * 9 7 6 12 12 H 1.48492 * 109.47334 * 89.99778 * 11 9 7 13 13 H 1.48497 * 109.47204 * 210.00064 * 11 9 7 14 14 H 1.48504 * 109.46747 * 329.99795 * 11 9 7 15 15 C 1.55154 * 102.94652 * 262.77735 * 4 2 1 16 16 C 1.55137 * 101.47971 * 324.33078 * 15 4 2 17 17 N 1.47020 * 109.88240 * 121.09598 * 2 1 3 18 18 C 1.34783 * 125.64611 * 300.43988 * 17 2 1 19 19 O 1.21274 * 120.00205 * 5.18124 * 18 17 2 20 20 C 1.50706 * 119.99624 * 184.90909 * 18 17 2 21 21 C 1.52588 * 109.23835 * 266.40155 * 20 18 17 22 22 C 1.53055 * 109.97601 * 169.67616 * 21 20 18 23 23 S 1.81671 * 108.96515 * 63.70503 * 22 21 20 24 24 O 1.42105 * 108.66186 * 191.35153 * 23 22 21 25 25 O 1.42105 * 108.66050 * 60.01561 * 23 22 21 26 26 C 1.81666 * 101.31033 * 305.68362 * 23 22 21 27 27 C 1.52589 * 109.23907 * 145.28941 * 20 18 17 28 28 H 1.09000 * 109.47269 * 300.35745 * 1 2 3 29 29 H 1.08996 * 109.46895 * 60.35965 * 1 2 3 30 30 H 1.08996 * 109.46783 * 180.35817 * 1 2 3 31 31 H 0.96996 * 120.00235 * 335.00353 * 6 4 2 32 32 H 0.96999 * 119.99565 * 179.97438 * 10 9 7 33 33 H 1.09000 * 111.00604 * 82.56715 * 15 4 2 34 34 H 1.08994 * 111.00395 * 206.42944 * 15 4 2 35 35 H 1.09002 * 110.49819 * 278.45054 * 16 15 4 36 36 H 1.09003 * 110.34139 * 156.06276 * 16 15 4 37 37 H 1.08996 * 109.24316 * 25.84417 * 20 18 17 38 38 H 1.08997 * 109.38892 * 289.87246 * 21 20 18 39 39 H 1.08997 * 109.38655 * 49.56324 * 21 20 18 40 40 H 1.08998 * 109.58030 * 303.84943 * 22 21 20 41 41 H 1.08997 * 109.63239 * 183.59152 * 22 21 20 42 42 H 1.09004 * 109.54832 * 294.44668 * 26 23 22 43 43 H 1.08992 * 109.55094 * 174.15077 * 26 23 22 44 44 H 1.08997 * 109.38760 * 310.43546 * 27 20 18 45 45 H 1.08996 * 109.38653 * 70.23238 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2426 5 1 2.9657 -0.2831 -1.6182 6 7 1.0293 -0.8026 -2.2875 7 6 1.3954 -0.9387 -3.6000 8 1 2.4403 -1.0065 -3.8649 9 6 0.4237 -0.9885 -4.5900 10 7 0.7757 -1.1189 -5.8516 11 14 -1.3833 -0.8692 -4.1320 12 1 -1.8027 0.5553 -4.1390 13 1 -2.1947 -1.6290 -5.1166 14 1 -1.5889 -1.4391 -2.7761 15 6 2.3519 -2.1695 -0.6924 16 6 2.8614 -1.8464 0.7369 17 7 2.0300 -0.7141 1.1839 18 6 1.7753 -0.3844 2.4657 19 8 1.0044 0.5170 2.7184 20 6 2.4440 -1.1401 3.5852 21 6 1.5308 -2.2740 4.0420 22 6 2.2882 -3.2048 4.9921 23 16 2.7443 -2.2786 6.4870 24 8 3.6641 -3.0564 7.2408 25 8 1.5571 -1.8062 7.1090 26 6 3.6294 -0.8622 5.7724 27 6 2.7291 -0.1823 4.7383 28 1 -0.3634 0.5194 0.8868 29 1 -0.3633 0.5082 -0.8932 30 1 -0.3633 -1.0276 0.0064 31 1 0.0910 -0.7413 -2.0496 32 1 0.0966 -1.1540 -6.5433 33 1 1.4453 -2.7736 -0.6604 34 1 3.1271 -2.6617 -1.2795 35 1 3.9124 -1.5587 0.7115 36 1 2.7179 -2.7048 1.3933 37 1 3.3837 -1.5586 3.2250 38 1 0.6655 -1.8567 4.5568 39 1 1.1948 -2.8402 3.1733 40 1 3.1895 -3.5726 4.5017 41 1 1.6519 -4.0467 5.2645 42 1 4.5427 -1.2090 5.2890 43 1 3.8792 -0.1526 6.5611 44 1 3.2274 0.7079 4.3545 45 1 1.7899 0.1043 5.2113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987109021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:17 Heat of formation + Delta-G solvation = -112.964301 kcal Electronic energy + Delta-G solvation = -27383.642233 eV Core-core repulsion = 23527.782819 eV Total energy + Delta-G solvation = -3855.859414 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.58574 -39.39616 -38.11055 -37.22585 -37.02373 -36.03738 -33.66884 -32.81678 -32.12698 -31.26149 -29.00717 -26.91620 -25.20629 -24.59534 -24.04189 -22.56557 -20.88919 -20.02944 -19.81657 -19.76008 -18.26501 -17.87681 -17.30285 -17.12216 -16.73611 -16.53112 -16.38824 -15.94764 -15.63049 -14.99788 -14.98681 -14.80606 -14.53307 -14.08448 -14.02374 -13.87158 -13.64439 -13.49669 -13.34967 -13.19890 -13.14350 -13.04599 -13.02994 -12.85666 -12.74318 -12.60820 -12.36999 -12.16122 -12.05956 -11.95018 -11.72909 -11.68477 -11.52424 -10.98260 -10.95061 -10.69781 -9.66445 -9.31526 -8.03065 -5.36006 -0.89475 1.35493 1.37579 1.44033 1.55806 1.78383 1.87837 2.46078 2.75125 2.96985 3.26542 3.36561 3.51208 3.55412 3.60131 3.69954 3.76912 3.86643 4.04477 4.08519 4.14196 4.21899 4.35069 4.38108 4.38623 4.51419 4.58020 4.61093 4.68932 4.76245 4.83774 4.88093 4.91632 5.03421 5.07459 5.12520 5.17833 5.27019 5.32169 5.48866 5.78067 6.21427 6.57764 7.06569 7.14292 7.82762 7.99834 9.18100 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.029567 B = 0.002694 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.790183 B =10392.375342 C =10553.634016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.130 3.870 3 H 0.069 0.931 4 C 0.167 3.833 5 H 0.071 0.929 6 N -0.747 5.747 7 C -0.224 4.224 8 H 0.067 0.933 9 C -0.058 4.058 10 N -0.981 5.981 11 Si 0.938 3.062 12 H -0.282 1.282 13 H -0.296 1.296 14 H -0.255 1.255 15 C -0.148 4.148 16 C 0.099 3.901 17 N -0.607 5.607 18 C 0.531 3.469 19 O -0.577 6.577 20 C -0.119 4.119 21 C -0.106 4.106 22 C -0.581 4.581 23 S 2.410 3.590 24 O -0.981 6.981 25 O -0.985 6.985 26 C -0.583 4.583 27 C -0.098 4.098 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.369 0.631 32 H 0.257 0.743 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.145 0.855 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.176 0.824 41 H 0.153 0.847 42 H 0.173 0.827 43 H 0.150 0.850 44 H 0.094 0.906 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.566 -4.375 24.627 26.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.026 3.974 3 H 0.087 0.913 4 C 0.058 3.942 5 H 0.089 0.911 6 N -0.392 5.392 7 C -0.355 4.355 8 H 0.085 0.915 9 C -0.250 4.250 10 N -0.631 5.631 11 Si 0.767 3.233 12 H -0.208 1.208 13 H -0.223 1.223 14 H -0.179 1.179 15 C -0.188 4.188 16 C -0.023 4.023 17 N -0.341 5.341 18 C 0.321 3.679 19 O -0.456 6.456 20 C -0.140 4.140 21 C -0.144 4.144 22 C -0.712 4.712 23 S 2.598 3.402 24 O -0.979 6.979 25 O -0.983 6.983 26 C -0.714 4.714 27 C -0.136 4.136 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.205 0.795 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.129 0.871 37 H 0.163 0.837 38 H 0.096 0.904 39 H 0.122 0.878 40 H 0.194 0.806 41 H 0.171 0.829 42 H 0.190 0.810 43 H 0.168 0.832 44 H 0.113 0.887 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.097 -4.103 25.583 27.145 hybrid contribution -1.323 0.492 -1.358 1.959 sum 6.774 -3.611 24.224 25.411 Atomic orbital electron populations 1.21979 0.96012 1.01789 1.01749 1.21619 0.94283 0.96039 0.85499 0.91304 1.21388 0.91691 0.94848 0.86277 0.91126 1.42976 1.04689 1.88933 1.02552 1.19048 0.93601 1.39999 0.82867 0.91533 1.25353 1.01607 1.03024 0.95042 1.69852 1.33746 1.59410 1.00106 0.85668 0.81770 0.77887 0.78013 1.20803 1.22256 1.17940 1.23397 1.01794 0.98119 0.95535 1.22695 0.95486 0.88879 0.95214 1.48658 1.50194 1.30938 1.04262 1.20632 0.81263 0.83488 0.82520 1.90696 1.37552 1.33685 1.83702 1.21595 1.02181 0.96442 0.93793 1.21223 0.97828 0.94428 1.00970 1.30072 1.12946 1.11675 1.16544 1.07955 0.75261 0.78461 0.78535 1.93559 1.65039 1.69863 1.69393 1.93549 1.48442 1.81408 1.74876 1.30087 1.12771 1.17861 1.10688 1.21107 1.00106 0.99010 0.93414 0.91750 0.92629 0.92741 0.79510 0.93400 0.91857 0.89651 0.88308 0.87104 0.83746 0.90429 0.87815 0.80609 0.82920 0.80959 0.83218 0.88743 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.01 7.92 71.98 0.57 -4.44 16 2 C 0.13 3.78 3.51 45.34 0.16 3.94 16 3 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 4 C 0.17 5.41 3.48 46.18 0.16 5.58 16 5 H 0.07 2.35 8.09 -2.39 -0.02 2.33 16 6 N -0.75 -31.91 4.74 -317.34 -1.51 -33.42 16 7 C -0.22 -11.89 10.44 84.03 0.88 -11.01 16 8 H 0.07 3.81 8.06 -2.91 -0.02 3.79 16 9 C -0.06 -3.31 5.50 84.86 0.47 -2.85 16 10 N -0.98 -60.81 13.97 21.65 0.30 -60.50 16 11 Si 0.94 44.26 27.74 68.60 1.90 46.16 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 14 H -0.25 -10.89 6.52 99.48 0.65 -10.24 16 15 C -0.15 -3.63 6.78 32.07 0.22 -3.42 16 16 C 0.10 1.48 6.18 86.94 0.54 2.02 16 17 N -0.61 -13.07 3.08 -787.60 -2.42 -15.49 16 18 C 0.53 11.38 6.57 87.66 0.58 11.95 16 19 O -0.58 -17.53 15.17 -3.01 -0.05 -17.58 16 20 C -0.12 -1.32 1.69 -11.81 -0.02 -1.34 16 21 C -0.11 -1.05 5.01 30.48 0.15 -0.89 16 22 C -0.58 -2.86 6.35 72.00 0.46 -2.41 16 23 S 2.41 27.76 5.31 -56.49 -0.30 27.46 16 24 O -0.98 -18.03 18.10 -127.40 -2.31 -20.34 16 25 O -0.99 -21.12 17.93 -127.40 -2.28 -23.41 16 26 C -0.58 -3.39 6.35 72.00 0.46 -2.93 16 27 C -0.10 -1.11 4.54 30.47 0.14 -0.97 16 28 H 0.06 2.10 6.60 -2.39 -0.02 2.08 16 29 H 0.05 1.92 6.82 -2.39 -0.02 1.90 16 30 H 0.05 1.72 8.01 -2.39 -0.02 1.70 16 31 H 0.37 15.61 2.92 -92.71 -0.27 15.34 16 32 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.11 0.88 7.47 -2.39 -0.02 0.86 16 37 H 0.14 0.39 7.09 -2.39 -0.02 0.37 16 38 H 0.08 1.08 8.01 -2.39 -0.02 1.06 16 39 H 0.10 0.91 7.89 -2.39 -0.02 0.89 16 40 H 0.18 -0.44 8.14 -2.39 -0.02 -0.46 16 41 H 0.15 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.17 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.09 1.09 8.09 -2.39 -0.02 1.08 16 45 H 0.08 1.21 7.99 -2.39 -0.02 1.19 16 Total: -1.00 -84.49 361.57 -1.25 -85.75 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.66 Total: 18.13 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: 4.75 Total: -6.77 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -3.63 Total: -109.41 kcal Atomic # 8 Polarization: -56.68 SS G_CDS: -4.64 Total: -61.32 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.90 Total: 46.16 kcal Atomic # 16 Polarization: 27.76 SS G_CDS: -0.30 Total: 27.46 kcal Total: -84.49 -1.25 -85.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987109021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.219 kcal (2) G-P(sol) polarization free energy of solvation -84.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds