Wall clock time and date at job start Tue Mar 31 2020 06:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58209 * 2 1 4 4 C 1.53190 * 109.58575 * 120.28588 * 2 1 3 5 5 H 1.08999 * 109.50012 * 294.54635 * 4 2 1 6 6 N 1.46495 * 109.49827 * 54.60957 * 4 2 1 7 7 C 1.34782 * 120.00137 * 204.99781 * 6 4 2 8 8 O 1.21272 * 119.99825 * 0.02562 * 7 6 4 9 9 C 1.50700 * 119.99797 * 180.02562 * 7 6 4 10 10 C 1.53009 * 109.46800 * 179.97438 * 9 7 6 11 11 C 1.53040 * 113.14971 * 275.37595 * 10 9 7 12 12 S 1.81435 * 89.88773 * 211.85088 * 11 10 9 13 13 O 1.42094 * 112.75303 * 280.48128 * 12 11 10 14 14 O 1.42102 * 112.74902 * 136.72963 * 12 11 10 15 15 C 1.53042 * 113.15143 * 175.00135 * 10 9 7 16 16 C 1.53037 * 109.31073 * 174.56426 * 4 2 1 17 17 C 1.53046 * 109.53832 * 298.63171 * 16 4 2 18 18 C 1.53188 * 109.30969 * 61.36910 * 17 16 4 19 19 N 1.46925 * 109.70292 * 239.64499 * 2 1 3 20 20 C 1.36940 * 120.63106 * 6.55603 * 19 2 1 21 21 H 1.08007 * 119.99895 * 330.20097 * 20 19 2 22 22 C 1.38813 * 120.00268 * 150.19646 * 20 19 2 23 23 N 1.31615 * 119.99584 * 344.45268 * 22 20 19 24 24 Si 1.86797 * 120.00188 * 164.45786 * 22 20 19 25 25 H 1.48496 * 109.46928 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47242 * 119.99777 * 24 22 20 27 27 H 1.48505 * 109.46683 * 240.00012 * 24 22 20 28 28 H 1.09005 * 109.46821 * 299.99937 * 1 2 3 29 29 H 1.09003 * 109.47236 * 59.99753 * 1 2 3 30 30 H 1.08997 * 109.47531 * 179.97438 * 1 2 3 31 31 H 0.97009 * 120.00232 * 25.00682 * 6 4 2 32 32 H 1.08990 * 109.47297 * 300.00073 * 9 7 6 33 33 H 1.08999 * 109.47150 * 60.00707 * 9 7 6 34 34 H 1.09004 * 112.49148 * 45.21598 * 10 9 7 35 35 H 1.08993 * 113.15468 * 327.11307 * 11 10 9 36 36 H 1.09001 * 113.14857 * 96.60145 * 11 10 9 37 37 H 1.08999 * 113.14957 * 263.41222 * 15 10 9 38 38 H 1.09010 * 113.14493 * 32.88905 * 15 10 9 39 39 H 1.09002 * 109.46316 * 58.65183 * 16 4 2 40 40 H 1.09001 * 109.46128 * 178.63107 * 16 4 2 41 41 H 1.08998 * 109.49311 * 181.31588 * 17 16 4 42 42 H 1.08997 * 109.49649 * 301.41464 * 17 16 4 43 43 H 1.08996 * 109.58968 * 65.15331 * 18 17 16 44 44 H 1.08994 * 109.58691 * 185.58029 * 18 17 16 45 45 H 0.97000 * 119.99726 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7279 1.2463 5 1 1.7634 -0.1658 2.1372 6 7 1.4540 -2.0675 1.3079 7 6 1.3308 -2.6958 2.4939 8 8 1.7077 -2.1519 3.5102 9 6 0.7248 -4.0741 2.5571 10 6 0.7031 -4.5556 4.0093 11 6 2.0204 -5.1979 4.4500 12 16 1.1059 -6.3022 5.5618 13 8 0.7295 -5.6696 6.7773 14 8 1.5758 -7.6424 5.5139 15 6 -0.0075 -5.8993 4.1872 16 6 3.5678 -0.8434 1.1728 17 6 3.9603 -1.6609 -0.0600 18 6 3.4685 -0.9436 -1.3211 19 7 2.0254 -0.6990 -1.1936 20 6 1.1585 -1.1143 -2.1690 21 1 0.1444 -1.3826 -1.9117 22 6 1.5831 -1.1905 -3.4884 23 7 2.6930 -0.5876 -3.8583 24 14 0.5790 -2.1483 -4.7389 25 1 -0.6157 -2.7285 -4.0746 26 1 0.1463 -1.2373 -5.8288 27 1 1.4085 -3.2412 -5.3071 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.1523 -2.5025 0.4950 32 1 -0.2933 -4.0415 2.1694 33 1 1.3208 -4.7609 1.9560 34 1 0.3480 -3.7885 4.6976 35 1 2.5299 -5.7267 3.6446 36 1 2.6783 -4.5074 4.9779 37 1 -1.0481 -5.7964 4.4946 38 1 0.1112 -6.5634 3.3309 39 1 4.0045 0.1528 1.1021 40 1 3.9380 -1.3394 2.0701 41 1 5.0448 -1.7625 -0.0988 42 1 3.5036 -2.6489 -0.0019 43 1 3.9920 0.0063 -1.4288 44 1 3.6575 -1.5683 -2.1940 45 1 2.9899 -0.6411 -4.7802 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993498005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:33 Heat of formation + Delta-G solvation = -68.512648 kcal Electronic energy + Delta-G solvation = -27413.862900 eV Core-core repulsion = 23559.931054 eV Total energy + Delta-G solvation = -3853.931846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.96452 -38.16502 -37.55109 -36.76088 -36.24300 -33.97232 -32.50227 -31.80284 -30.05869 -28.64842 -26.93159 -26.24618 -25.07043 -22.49841 -21.43155 -20.82480 -20.07299 -19.09605 -18.77863 -17.26147 -16.79583 -16.59213 -16.44913 -16.24627 -15.53639 -15.26310 -14.92793 -14.71485 -14.05803 -13.80340 -13.57945 -13.38272 -13.27072 -13.14844 -12.95435 -12.67125 -12.51523 -12.48391 -12.41822 -11.91558 -11.56890 -11.40205 -11.32821 -11.28390 -11.05811 -10.84942 -10.77349 -10.67000 -10.57492 -10.56274 -10.17537 -10.08150 -9.73772 -9.53995 -9.36463 -8.61881 -8.51073 -6.74618 -5.88806 -3.34660 -0.11227 1.72531 2.89531 3.28054 3.35916 3.37719 3.37881 3.48226 3.75203 3.99924 4.38023 4.39341 4.64477 4.84274 4.92889 5.12480 5.19060 5.24621 5.26861 5.37682 5.41888 5.52563 5.56594 5.59940 5.68508 5.83496 5.90078 6.05960 6.16048 6.26742 6.35334 6.46685 6.60648 6.61168 6.71606 6.87529 6.90413 7.04969 7.30404 7.58673 7.70642 7.95390 8.34580 8.55729 9.10522 9.73520 10.31051 11.19138 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.017716 B = 0.003002 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.127611 B = 9325.611439 C = 9917.240218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.038 0.962 4 C 0.134 3.866 5 H 0.075 0.925 6 N -0.700 5.700 7 C 0.507 3.493 8 O -0.555 6.555 9 C -0.121 4.121 10 C -0.049 4.049 11 C -0.592 4.592 12 S 2.406 3.594 13 O -0.916 6.916 14 O -0.932 6.932 15 C -0.600 4.600 16 C -0.121 4.121 17 C -0.139 4.139 18 C 0.172 3.828 19 N -0.586 5.586 20 C -0.258 4.258 21 H 0.071 0.929 22 C 0.007 3.993 23 N -0.898 5.898 24 Si 0.900 3.100 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.290 1.290 28 H 0.039 0.961 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.409 0.591 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.142 0.858 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.144 0.856 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.052 0.948 43 H 0.018 0.982 44 H 0.085 0.915 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.427 -8.657 13.296 16.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.052 3.948 3 H 0.056 0.944 4 C 0.027 3.973 5 H 0.093 0.907 6 N -0.351 5.351 7 C 0.293 3.707 8 O -0.434 6.434 9 C -0.162 4.162 10 C -0.070 4.070 11 C -0.721 4.721 12 S 2.588 3.412 13 O -0.913 6.913 14 O -0.929 6.929 15 C -0.729 4.729 16 C -0.159 4.159 17 C -0.179 4.179 18 C 0.046 3.954 19 N -0.310 5.310 20 C -0.387 4.387 21 H 0.088 0.912 22 C -0.193 4.193 23 N -0.542 5.542 24 Si 0.730 3.270 25 H -0.203 1.203 26 H -0.218 1.218 27 H -0.216 1.216 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.245 0.755 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.140 0.860 35 H 0.160 0.840 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.162 0.838 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.036 0.964 44 H 0.103 0.897 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.012 -8.890 14.865 17.581 hybrid contribution -0.555 0.053 -2.304 2.371 sum -3.567 -8.837 12.561 15.767 Atomic orbital electron populations 1.21775 0.95645 1.01384 1.00455 1.20718 0.93327 0.93927 0.86863 0.94419 1.21524 0.92888 0.83128 0.99726 0.90656 1.46027 1.61506 1.18537 1.09054 1.20460 0.79030 0.87382 0.83840 1.90653 1.50684 1.67602 1.34452 1.21496 1.03430 0.95346 0.95950 1.21192 0.91447 0.94813 0.99556 1.31007 1.09039 1.15590 1.16448 1.08475 0.80639 0.75399 0.76674 1.93717 1.80144 1.77410 1.40031 1.93635 1.77252 1.33323 1.88658 1.31071 1.15109 1.06112 1.20595 1.21766 0.95560 1.00435 0.98165 1.22134 0.98885 0.99511 0.97337 1.20783 0.83185 0.97168 0.94252 1.44167 1.03059 1.64902 1.18849 1.19175 0.95253 1.38123 0.86155 0.91182 1.25117 0.97789 0.99338 0.97031 1.70033 1.24013 1.43394 1.16769 0.86281 0.79551 0.79592 0.81621 1.20261 1.21757 1.21624 0.94219 0.91803 0.92819 0.75485 0.88061 0.88282 0.85954 0.84012 0.85219 0.85619 0.83764 0.91998 0.93185 0.93517 0.92892 0.96415 0.89674 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 7.74 37.16 0.29 -2.02 16 2 C 0.16 2.98 3.19 -67.60 -0.22 2.77 16 3 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 4 C 0.13 2.23 2.32 -67.82 -0.16 2.08 16 5 H 0.08 1.28 7.58 -51.93 -0.39 0.89 16 6 N -0.70 -10.49 3.46 -53.70 -0.19 -10.68 16 7 C 0.51 7.07 7.79 -10.98 -0.09 6.99 16 8 O -0.55 -9.36 15.44 5.56 0.09 -9.27 16 9 C -0.12 -1.16 5.48 -27.88 -0.15 -1.31 16 10 C -0.05 -0.42 2.80 -90.57 -0.25 -0.68 16 11 C -0.59 -4.52 7.49 37.18 0.28 -4.24 16 12 S 2.41 17.61 7.55 -107.50 -0.81 16.80 16 13 O -0.92 -10.00 18.18 -57.30 -1.04 -11.04 16 14 O -0.93 -9.77 18.18 -57.30 -1.04 -10.81 16 15 C -0.60 -3.41 7.49 37.18 0.28 -3.13 16 16 C -0.12 -2.03 5.58 -26.69 -0.15 -2.18 16 17 C -0.14 -2.50 5.93 -26.61 -0.16 -2.66 16 18 C 0.17 3.76 5.28 -3.71 -0.02 3.74 16 19 N -0.59 -12.88 2.64 -164.78 -0.44 -13.31 16 20 C -0.26 -6.20 8.58 -15.06 -0.13 -6.33 16 21 H 0.07 1.63 6.24 -52.48 -0.33 1.30 16 22 C 0.01 0.17 4.94 -17.43 -0.09 0.08 16 23 N -0.90 -24.47 11.23 55.49 0.62 -23.85 16 24 Si 0.90 20.14 29.58 -169.99 -5.03 15.11 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.19 7.66 -51.93 -0.40 0.79 16 30 H 0.05 0.89 6.40 -51.93 -0.33 0.56 16 31 H 0.41 6.22 7.78 -40.82 -0.32 5.90 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 0.81 7.89 -51.93 -0.41 0.40 16 34 H 0.12 1.17 7.71 -51.93 -0.40 0.77 16 35 H 0.14 0.89 7.94 -51.93 -0.41 0.48 16 36 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.13 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.14 0.61 8.12 -51.92 -0.42 0.19 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.95 7.53 -51.93 -0.39 0.56 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 2.11 6.14 -51.93 -0.32 1.79 16 45 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -33.52 364.77 -9.96 -43.48 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.06 Total: 4.98 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -0.56 Total: -6.90 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.00 Total: -47.84 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -2.00 Total: -31.13 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Atomic # 16 Polarization: 17.61 SS G_CDS: -0.81 Total: 16.80 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.52 -9.96 -43.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993498005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.034 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds