Wall clock time and date at job start Tue Mar 31 2020 06:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58209 * 2 1 4 4 C 1.53190 * 109.58575 * 120.28588 * 2 1 3 5 5 H 1.08999 * 109.50012 * 294.54635 * 4 2 1 6 6 N 1.46495 * 109.49827 * 54.60957 * 4 2 1 7 7 C 1.34782 * 120.00137 * 204.99781 * 6 4 2 8 8 O 1.21272 * 119.99825 * 0.02562 * 7 6 4 9 9 C 1.50700 * 119.99797 * 180.02562 * 7 6 4 10 10 C 1.53009 * 109.46800 * 179.97438 * 9 7 6 11 11 C 1.53040 * 113.14971 * 275.37595 * 10 9 7 12 12 S 1.81435 * 89.88773 * 211.85088 * 11 10 9 13 13 O 1.42094 * 112.75303 * 280.48128 * 12 11 10 14 14 O 1.42102 * 112.74902 * 136.72963 * 12 11 10 15 15 C 1.53042 * 113.15143 * 175.00135 * 10 9 7 16 16 C 1.53037 * 109.31073 * 174.56426 * 4 2 1 17 17 C 1.53046 * 109.53832 * 298.63171 * 16 4 2 18 18 C 1.53188 * 109.30969 * 61.36910 * 17 16 4 19 19 N 1.46925 * 109.70292 * 239.64499 * 2 1 3 20 20 C 1.36940 * 120.63106 * 6.55603 * 19 2 1 21 21 H 1.08007 * 119.99895 * 330.20097 * 20 19 2 22 22 C 1.38813 * 120.00268 * 150.19646 * 20 19 2 23 23 N 1.31615 * 119.99584 * 344.45268 * 22 20 19 24 24 Si 1.86797 * 120.00188 * 164.45786 * 22 20 19 25 25 H 1.48496 * 109.46928 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47242 * 119.99777 * 24 22 20 27 27 H 1.48505 * 109.46683 * 240.00012 * 24 22 20 28 28 H 1.09005 * 109.46821 * 299.99937 * 1 2 3 29 29 H 1.09003 * 109.47236 * 59.99753 * 1 2 3 30 30 H 1.08997 * 109.47531 * 179.97438 * 1 2 3 31 31 H 0.97009 * 120.00232 * 25.00682 * 6 4 2 32 32 H 1.08990 * 109.47297 * 300.00073 * 9 7 6 33 33 H 1.08999 * 109.47150 * 60.00707 * 9 7 6 34 34 H 1.09004 * 112.49148 * 45.21598 * 10 9 7 35 35 H 1.08993 * 113.15468 * 327.11307 * 11 10 9 36 36 H 1.09001 * 113.14857 * 96.60145 * 11 10 9 37 37 H 1.08999 * 113.14957 * 263.41222 * 15 10 9 38 38 H 1.09010 * 113.14493 * 32.88905 * 15 10 9 39 39 H 1.09002 * 109.46316 * 58.65183 * 16 4 2 40 40 H 1.09001 * 109.46128 * 178.63107 * 16 4 2 41 41 H 1.08998 * 109.49311 * 181.31588 * 17 16 4 42 42 H 1.08997 * 109.49649 * 301.41464 * 17 16 4 43 43 H 1.08996 * 109.58968 * 65.15331 * 18 17 16 44 44 H 1.08994 * 109.58691 * 185.58029 * 18 17 16 45 45 H 0.97000 * 119.99726 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7279 1.2463 5 1 1.7634 -0.1658 2.1372 6 7 1.4540 -2.0675 1.3079 7 6 1.3308 -2.6958 2.4939 8 8 1.7077 -2.1519 3.5102 9 6 0.7248 -4.0741 2.5571 10 6 0.7031 -4.5556 4.0093 11 6 2.0204 -5.1979 4.4500 12 16 1.1059 -6.3022 5.5618 13 8 0.7295 -5.6696 6.7773 14 8 1.5758 -7.6424 5.5139 15 6 -0.0075 -5.8993 4.1872 16 6 3.5678 -0.8434 1.1728 17 6 3.9603 -1.6609 -0.0600 18 6 3.4685 -0.9436 -1.3211 19 7 2.0254 -0.6990 -1.1936 20 6 1.1585 -1.1143 -2.1690 21 1 0.1444 -1.3826 -1.9117 22 6 1.5831 -1.1905 -3.4884 23 7 2.6930 -0.5876 -3.8583 24 14 0.5790 -2.1483 -4.7389 25 1 -0.6157 -2.7285 -4.0746 26 1 0.1463 -1.2373 -5.8288 27 1 1.4085 -3.2412 -5.3071 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.1523 -2.5025 0.4950 32 1 -0.2933 -4.0415 2.1694 33 1 1.3208 -4.7609 1.9560 34 1 0.3480 -3.7885 4.6976 35 1 2.5299 -5.7267 3.6446 36 1 2.6783 -4.5074 4.9779 37 1 -1.0481 -5.7964 4.4946 38 1 0.1112 -6.5634 3.3309 39 1 4.0045 0.1528 1.1021 40 1 3.9380 -1.3394 2.0701 41 1 5.0448 -1.7625 -0.0988 42 1 3.5036 -2.6489 -0.0019 43 1 3.9920 0.0063 -1.4288 44 1 3.6575 -1.5683 -2.1940 45 1 2.9899 -0.6411 -4.7802 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993498005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:32 Heat of formation + Delta-G solvation = -92.477592 kcal Electronic energy + Delta-G solvation = -27414.902098 eV Core-core repulsion = 23559.931054 eV Total energy + Delta-G solvation = -3854.971044 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.14865 -39.39758 -38.31917 -37.61408 -36.96769 -35.52144 -33.99763 -33.37343 -31.47117 -29.71896 -27.74729 -27.45903 -26.79880 -23.93348 -22.57660 -22.28472 -21.05119 -20.23333 -19.71292 -18.26583 -18.23232 -17.44031 -17.25551 -17.04858 -16.89408 -16.40880 -16.29372 -15.73439 -15.67943 -15.23747 -14.78891 -14.68592 -14.39135 -14.17643 -14.00372 -13.83855 -13.52360 -13.30515 -13.23128 -13.20517 -12.91704 -12.86029 -12.70036 -12.42310 -12.28766 -12.20273 -12.15838 -12.01756 -11.87645 -11.65291 -11.48797 -11.34265 -11.15065 -11.00361 -10.66972 -10.49058 -9.81964 -8.58982 -7.79836 -5.26908 -0.71152 1.17333 1.50733 1.54508 1.62422 1.83424 2.41432 2.56104 2.83780 3.15940 3.33599 3.37184 3.61172 3.72764 3.97658 4.04016 4.10605 4.18023 4.23267 4.38152 4.41588 4.45931 4.59920 4.62721 4.68628 4.76381 4.82465 4.85202 4.97124 5.01446 5.02027 5.07078 5.15698 5.22511 5.25972 5.36996 5.48937 5.57259 5.71766 5.77685 5.82508 6.46378 6.80657 7.21425 7.44588 7.91517 8.45354 9.27012 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.017716 B = 0.003002 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.127611 B = 9325.611439 C = 9917.240218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 H 0.023 0.977 4 C 0.144 3.856 5 H 0.076 0.924 6 N -0.701 5.701 7 C 0.505 3.495 8 O -0.586 6.586 9 C -0.116 4.116 10 C -0.062 4.062 11 C -0.594 4.594 12 S 2.427 3.573 13 O -0.957 6.957 14 O -0.964 6.964 15 C -0.569 4.569 16 C -0.115 4.115 17 C -0.124 4.124 18 C 0.179 3.821 19 N -0.595 5.595 20 C -0.245 4.245 21 H 0.084 0.916 22 C -0.051 4.051 23 N -0.938 5.938 24 Si 0.959 3.041 25 H -0.258 1.258 26 H -0.304 1.304 27 H -0.297 1.297 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.410 0.590 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.160 0.840 36 H 0.118 0.882 37 H 0.147 0.853 38 H 0.171 0.829 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.059 0.941 43 H -0.011 1.011 44 H 0.054 0.946 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.149 -10.370 13.897 18.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 H 0.041 0.959 4 C 0.037 3.963 5 H 0.094 0.906 6 N -0.352 5.352 7 C 0.293 3.707 8 O -0.467 6.467 9 C -0.157 4.157 10 C -0.083 4.083 11 C -0.723 4.723 12 S 2.613 3.387 13 O -0.954 6.954 14 O -0.961 6.961 15 C -0.700 4.700 16 C -0.154 4.154 17 C -0.163 4.163 18 C 0.054 3.946 19 N -0.319 5.319 20 C -0.375 4.375 21 H 0.101 0.899 22 C -0.246 4.246 23 N -0.584 5.584 24 Si 0.789 3.211 25 H -0.182 1.182 26 H -0.232 1.232 27 H -0.224 1.224 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.246 0.754 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.127 0.873 35 H 0.178 0.822 36 H 0.137 0.863 37 H 0.165 0.835 38 H 0.188 0.812 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.008 0.992 44 H 0.073 0.927 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.747 -10.631 15.528 19.408 hybrid contribution -0.014 0.684 -2.461 2.554 sum -4.761 -9.947 13.067 17.099 Atomic orbital electron populations 1.21692 0.94067 1.01993 1.00671 1.20835 0.94626 0.93173 0.86430 0.95941 1.21215 0.92650 0.84214 0.98190 0.90594 1.46000 1.61697 1.17807 1.09679 1.21224 0.78132 0.88653 0.82668 1.90649 1.51940 1.68741 1.35371 1.21582 1.04724 0.92553 0.96873 1.21234 0.92383 0.95847 0.98842 1.31107 1.09052 1.15324 1.16841 1.07675 0.80641 0.74026 0.76310 1.93659 1.80977 1.77852 1.42900 1.93588 1.78379 1.35067 1.89077 1.30888 1.15442 1.04184 1.19535 1.21711 0.95874 1.00188 0.97605 1.21933 0.99546 0.99243 0.95581 1.20557 0.83408 0.95585 0.95079 1.44350 1.02838 1.65379 1.19363 1.19550 0.95721 1.35920 0.86291 0.89886 1.25807 0.98935 1.00912 0.98941 1.70194 1.26035 1.45737 1.16483 0.85327 0.78745 0.77844 0.79224 1.18187 1.23154 1.22407 0.91931 0.93666 0.91921 0.75358 0.85676 0.86093 0.87307 0.82228 0.86320 0.83476 0.81157 0.92204 0.92557 0.92334 0.92267 0.99244 0.92737 0.94565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 7.74 71.98 0.56 -3.53 16 2 C 0.16 5.70 3.19 44.97 0.14 5.85 16 3 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 4 C 0.14 4.58 2.32 45.07 0.10 4.68 16 5 H 0.08 2.45 7.58 -2.39 -0.02 2.43 16 6 N -0.70 -19.13 3.46 -442.18 -1.53 -20.66 16 7 C 0.51 12.63 7.79 87.66 0.68 13.32 16 8 O -0.59 -18.64 15.44 -3.00 -0.05 -18.68 16 9 C -0.12 -1.75 5.48 29.85 0.16 -1.59 16 10 C -0.06 -0.86 2.80 -10.76 -0.03 -0.89 16 11 C -0.59 -7.74 7.49 72.00 0.54 -7.20 16 12 S 2.43 31.69 7.55 -56.49 -0.43 31.27 16 13 O -0.96 -20.42 18.18 -127.88 -2.32 -22.75 16 14 O -0.96 -18.93 18.18 -127.88 -2.32 -21.25 16 15 C -0.57 -4.16 7.49 72.00 0.54 -3.62 16 16 C -0.12 -3.73 5.58 30.62 0.17 -3.56 16 17 C -0.12 -4.32 5.93 30.67 0.18 -4.14 16 18 C 0.18 7.97 5.28 86.36 0.46 8.43 16 19 N -0.60 -25.95 2.64 -675.24 -1.78 -27.73 16 20 C -0.24 -11.57 8.58 84.03 0.72 -10.85 16 21 H 0.08 3.68 6.24 -2.91 -0.02 3.66 16 22 C -0.05 -2.59 4.94 84.86 0.42 -2.17 16 23 N -0.94 -52.46 11.23 21.65 0.24 -52.22 16 24 Si 0.96 41.29 29.58 68.60 2.03 43.32 16 25 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 26 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 27 H -0.30 -13.01 7.11 99.48 0.71 -12.30 16 28 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.04 1.61 7.66 -2.39 -0.02 1.60 16 30 H 0.06 1.89 6.40 -2.39 -0.02 1.88 16 31 H 0.41 11.19 7.78 -92.70 -0.72 10.47 16 32 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.12 1.36 7.89 -2.39 -0.02 1.34 16 34 H 0.11 1.86 7.71 -2.38 -0.02 1.84 16 35 H 0.16 1.48 7.94 -2.39 -0.02 1.46 16 36 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.15 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.17 0.49 8.12 -2.38 -0.02 0.47 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.06 2.00 7.53 -2.39 -0.02 1.98 16 43 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 44 H 0.05 2.77 6.14 -2.39 -0.01 2.75 16 45 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 Total: -1.00 -73.44 364.77 -1.24 -74.68 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.28 Total: 19.31 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 4.65 Total: -5.27 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -3.07 Total: -100.61 kcal Atomic # 8 Polarization: -57.99 SS G_CDS: -4.70 Total: -62.69 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 31.69 SS G_CDS: -0.43 Total: 31.27 kcal Total: -73.44 -1.24 -74.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993498005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.801 kcal (2) G-P(sol) polarization free energy of solvation -73.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds