Wall clock time and date at job start Tue Mar 31 2020 06:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.59073 * 2 1 4 4 C 1.53185 * 109.58994 * 239.71051 * 2 1 3 5 5 H 1.09000 * 109.49907 * 65.62928 * 4 2 1 6 6 N 1.46502 * 109.50114 * 305.53557 * 4 2 1 7 7 C 1.34770 * 120.00293 * 155.16186 * 6 4 2 8 8 O 1.21280 * 120.00287 * 359.97438 * 7 6 4 9 9 C 1.50704 * 119.99799 * 180.02562 * 7 6 4 10 10 C 1.53003 * 109.46866 * 179.97438 * 9 7 6 11 11 C 1.53043 * 113.15037 * 275.37387 * 10 9 7 12 12 S 1.81429 * 89.89083 * 211.85449 * 11 10 9 13 13 O 1.42102 * 112.75290 * 280.47790 * 12 11 10 14 14 O 1.42095 * 112.75812 * 136.72898 * 12 11 10 15 15 C 1.53044 * 113.15321 * 174.99992 * 10 9 7 16 16 C 1.53043 * 109.31619 * 185.58186 * 4 2 1 17 17 C 1.53040 * 109.52490 * 61.37058 * 16 4 2 18 18 C 1.53184 * 109.31474 * 298.61818 * 17 16 4 19 19 N 1.46922 * 108.76654 * 54.65413 * 18 17 16 20 20 C 1.36941 * 120.62921 * 126.36048 * 19 18 17 21 21 H 1.08008 * 120.00144 * 209.02547 * 20 19 18 22 22 C 1.38813 * 120.00044 * 29.03481 * 20 19 18 23 23 N 1.31616 * 120.00052 * 15.00882 * 22 20 19 24 24 Si 1.86800 * 119.99664 * 195.02099 * 22 20 19 25 25 H 1.48499 * 109.47289 * 89.99888 * 24 22 20 26 26 H 1.48500 * 109.46731 * 209.99371 * 24 22 20 27 27 H 1.48498 * 109.47492 * 329.99092 * 24 22 20 28 28 H 1.08993 * 109.47312 * 180.28510 * 1 2 3 29 29 H 1.09000 * 109.47675 * 300.28816 * 1 2 3 30 30 H 1.09005 * 109.46550 * 60.28727 * 1 2 3 31 31 H 0.97001 * 119.99414 * 335.15521 * 6 4 2 32 32 H 1.08996 * 109.47368 * 299.99375 * 9 7 6 33 33 H 1.09001 * 109.47021 * 60.00186 * 9 7 6 34 34 H 1.08997 * 112.49992 * 45.21473 * 10 9 7 35 35 H 1.08998 * 113.14840 * 327.10750 * 11 10 9 36 36 H 1.09004 * 113.15300 * 96.59801 * 11 10 9 37 37 H 1.08996 * 113.14691 * 263.40995 * 15 10 9 38 38 H 1.09006 * 113.14590 * 32.84894 * 15 10 9 39 39 H 1.09001 * 109.46182 * 181.38534 * 16 4 2 40 40 H 1.09002 * 109.45836 * 301.36097 * 16 4 2 41 41 H 1.09001 * 109.49721 * 58.58348 * 17 16 4 42 42 H 1.09004 * 109.49341 * 178.67789 * 17 16 4 43 43 H 1.09006 * 109.59702 * 294.86734 * 18 17 16 44 44 H 1.09004 * 109.58996 * 174.44050 * 18 17 16 45 45 H 0.96997 * 119.99694 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2462 5 1 1.7661 -0.1643 -2.1369 6 7 1.4514 -2.0664 -1.3096 7 6 1.3315 -2.6947 -2.4958 8 8 1.7134 -2.1520 -3.5109 9 6 0.7217 -4.0714 -2.5610 10 6 0.7036 -4.5528 -4.0132 11 6 -0.5157 -4.0592 -4.7955 12 16 -0.4942 -5.5813 -5.7826 13 8 0.4809 -5.5525 -6.8159 14 8 -1.7905 -6.1311 -5.9735 15 6 0.2118 -5.9943 -4.1632 16 6 3.5675 -0.8467 -1.1710 17 6 3.9565 -1.6660 0.0617 18 6 3.4649 -0.9486 1.3227 19 7 2.0225 -0.7010 1.1937 20 6 1.1535 -1.1161 2.1672 21 1 0.1357 -1.3704 1.9100 22 6 1.5805 -1.2100 3.4847 23 7 2.7036 -0.6323 3.8552 24 14 0.5614 -2.1566 4.7316 25 1 0.9958 -3.5765 4.7504 26 1 0.7519 -1.5629 6.0794 27 1 -0.8735 -2.0827 4.3565 28 1 -0.3633 -1.0276 0.0051 29 1 -0.3634 0.5183 0.8874 30 1 -0.3632 0.5094 -0.8926 31 1 1.1457 -2.5004 -0.4977 32 1 1.3130 -4.7597 -1.9571 33 1 -0.2980 -4.0356 -2.1777 34 1 1.6470 -4.3664 -4.5263 35 1 -1.4093 -3.9610 -4.1791 36 1 -0.3138 -3.1641 -5.3839 37 1 1.0230 -6.7199 -4.2217 38 1 -0.5411 -6.2692 -3.4244 39 1 3.9379 -1.3425 -2.0683 40 1 4.0062 0.1486 -1.0987 41 1 3.4977 -2.6530 0.0021 42 1 5.0408 -1.7702 0.1019 43 1 3.9902 0.0002 1.4318 44 1 3.6516 -1.5744 2.1955 45 1 3.0018 -0.6976 4.7759 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993498008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:40 Heat of formation + Delta-G solvation = -68.061606 kcal Electronic energy + Delta-G solvation = -27390.396412 eV Core-core repulsion = 23536.484125 eV Total energy + Delta-G solvation = -3853.912287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.96436 -38.16747 -37.55428 -36.76206 -36.24741 -33.97521 -32.49687 -31.81052 -30.05111 -28.64461 -26.93662 -26.24431 -25.07576 -22.48694 -21.43818 -20.82329 -20.07038 -19.09980 -18.77645 -17.26279 -16.76549 -16.62007 -16.45982 -16.24555 -15.48072 -15.36964 -14.92708 -14.66454 -13.99049 -13.85498 -13.60689 -13.43000 -13.28193 -13.08290 -12.95401 -12.66749 -12.51823 -12.48714 -12.40698 -11.92226 -11.57176 -11.43682 -11.30967 -11.27258 -11.03735 -10.85051 -10.78232 -10.66861 -10.57869 -10.57017 -10.17035 -10.07570 -9.72613 -9.54047 -9.37097 -8.61405 -8.50749 -6.75554 -5.88159 -3.34005 -0.11638 1.72131 2.89599 3.28573 3.35548 3.37477 3.37696 3.47920 3.74641 4.00164 4.37984 4.39228 4.64094 4.83805 4.92640 5.12145 5.19365 5.24806 5.27050 5.36729 5.42317 5.52264 5.57743 5.58973 5.69377 5.83079 5.90568 6.05722 6.15779 6.26898 6.35052 6.47434 6.61302 6.61852 6.72029 6.87800 6.89819 7.04828 7.31901 7.60502 7.70387 7.95437 8.34691 8.55761 9.10867 9.73818 10.30777 11.19597 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.002998 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.582660 B = 9338.849068 C =10082.106074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.038 0.962 4 C 0.134 3.866 5 H 0.075 0.925 6 N -0.700 5.700 7 C 0.507 3.493 8 O -0.555 6.555 9 C -0.121 4.121 10 C -0.049 4.049 11 C -0.592 4.592 12 S 2.406 3.594 13 O -0.916 6.916 14 O -0.932 6.932 15 C -0.600 4.600 16 C -0.121 4.121 17 C -0.139 4.139 18 C 0.170 3.830 19 N -0.586 5.586 20 C -0.257 4.257 21 H 0.071 0.929 22 C 0.006 3.994 23 N -0.900 5.900 24 Si 0.901 3.099 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.279 1.279 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.409 0.591 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.142 0.858 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.144 0.856 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.046 0.954 43 H 0.017 0.983 44 H 0.088 0.912 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.230 -8.201 -13.378 16.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.052 3.948 3 H 0.056 0.944 4 C 0.027 3.973 5 H 0.093 0.907 6 N -0.351 5.351 7 C 0.293 3.707 8 O -0.434 6.434 9 C -0.162 4.162 10 C -0.070 4.070 11 C -0.721 4.721 12 S 2.588 3.412 13 O -0.913 6.913 14 O -0.929 6.929 15 C -0.729 4.729 16 C -0.160 4.160 17 C -0.179 4.179 18 C 0.045 3.955 19 N -0.310 5.310 20 C -0.387 4.387 21 H 0.089 0.911 22 C -0.193 4.193 23 N -0.544 5.544 24 Si 0.731 3.269 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.205 1.205 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.245 0.755 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.140 0.860 35 H 0.160 0.840 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.162 0.838 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.035 0.965 44 H 0.106 0.894 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.200 -8.255 -14.992 17.622 hybrid contribution -0.175 -0.136 2.339 2.350 sum -4.375 -8.391 -12.653 15.800 Atomic orbital electron populations 1.21779 0.95673 1.01398 1.00413 1.20716 0.93317 0.93926 0.86874 0.94400 1.21524 0.92898 0.83148 0.99687 0.90690 1.46022 1.61355 1.18642 1.09093 1.20459 0.78998 0.87443 0.83814 1.90655 1.50636 1.67574 1.34534 1.21497 1.03447 0.95258 0.96020 1.21191 0.98202 0.90048 0.97573 1.31007 1.05760 1.21424 1.13889 1.08470 0.75204 0.80377 0.77122 1.93720 1.60687 1.84614 1.52263 1.93633 1.37351 1.75100 1.86804 1.31073 1.13186 1.04404 1.24238 1.21769 0.95531 1.00444 0.98209 1.22137 0.98910 0.99499 0.97330 1.20819 0.83109 0.97222 0.94360 1.44169 1.03128 1.64750 1.18940 1.19164 0.94833 1.38321 0.86364 0.91148 1.25104 0.97722 0.99513 0.96989 1.70014 1.23256 1.44151 1.16934 0.86324 0.79810 0.79728 0.81044 1.21475 1.21808 1.20454 0.92803 0.91817 0.94256 0.75488 0.88019 0.88318 0.85962 0.84025 0.85210 0.85612 0.83765 0.93150 0.92001 0.92900 0.93507 0.96456 0.89412 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 7.72 37.16 0.29 -2.02 16 2 C 0.16 2.98 3.20 -67.60 -0.22 2.77 16 3 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 4 C 0.13 2.24 2.32 -67.81 -0.16 2.08 16 5 H 0.08 1.28 7.58 -51.93 -0.39 0.88 16 6 N -0.70 -10.50 3.47 -53.69 -0.19 -10.68 16 7 C 0.51 7.08 7.79 -10.99 -0.09 7.00 16 8 O -0.55 -9.37 15.44 5.56 0.09 -9.28 16 9 C -0.12 -1.16 5.48 -27.88 -0.15 -1.31 16 10 C -0.05 -0.42 2.80 -90.57 -0.25 -0.68 16 11 C -0.59 -4.39 7.49 37.18 0.28 -4.11 16 12 S 2.41 17.43 7.55 -107.50 -0.81 16.62 16 13 O -0.92 -9.99 18.18 -57.30 -1.04 -11.03 16 14 O -0.93 -9.65 18.18 -57.30 -1.04 -10.69 16 15 C -0.60 -3.43 7.49 37.18 0.28 -3.15 16 16 C -0.12 -2.05 5.58 -26.69 -0.15 -2.20 16 17 C -0.14 -2.52 5.93 -26.62 -0.16 -2.68 16 18 C 0.17 3.75 5.29 -3.72 -0.02 3.73 16 19 N -0.59 -12.89 2.65 -164.78 -0.44 -13.32 16 20 C -0.26 -6.20 8.61 -15.06 -0.13 -6.33 16 21 H 0.07 1.63 6.20 -52.48 -0.33 1.31 16 22 C 0.01 0.15 4.96 -17.43 -0.09 0.07 16 23 N -0.90 -24.50 11.14 55.49 0.62 -23.88 16 24 Si 0.90 20.16 29.58 -169.99 -5.03 15.13 16 25 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 28 H 0.05 0.89 6.37 -51.93 -0.33 0.56 16 29 H 0.06 1.19 7.66 -51.93 -0.40 0.79 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.41 6.22 7.77 -40.82 -0.32 5.90 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.77 7.89 -51.93 -0.41 0.36 16 34 H 0.12 1.19 7.71 -51.93 -0.40 0.79 16 35 H 0.14 0.83 7.94 -51.93 -0.41 0.42 16 36 H 0.13 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.13 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.14 0.61 8.12 -51.93 -0.42 0.18 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.95 7.53 -51.93 -0.39 0.56 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 2.18 6.06 -51.93 -0.31 1.87 16 45 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 364.57 15.07 5.49 5.49 Total: -1.00 -33.49 364.57 -9.97 -43.46 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.05 Total: 5.04 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.56 Total: -6.84 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.00 Total: -47.89 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -2.00 Total: -31.01 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Atomic # 16 Polarization: 17.43 SS G_CDS: -0.81 Total: 16.62 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.49 -9.97 -43.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993498008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.606 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds