Wall clock time and date at job start Tue Mar 31 2020 05:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 110.30744 * 2 1 4 4 C 1.54390 * 110.34647 * 237.82479 * 2 1 3 5 5 N 1.48310 * 104.53933 * 217.33607 * 4 2 1 6 6 C 1.34776 * 127.76983 * 219.51441 * 5 4 2 7 7 O 1.21281 * 120.00362 * 174.90992 * 6 5 4 8 8 C 1.50700 * 119.99919 * 354.90804 * 6 5 4 9 9 H 1.08994 * 110.01379 * 26.95840 * 8 6 5 10 10 C 1.53875 * 110.02786 * 148.34355 * 8 6 5 11 11 C 1.54164 * 108.70575 * 166.47049 * 10 8 6 12 12 S 1.82925 * 105.08632 * 332.09082 * 11 10 8 13 13 O 1.42102 * 109.35305 * 115.52242 * 12 11 10 14 14 O 1.42102 * 109.35241 * 248.59431 * 12 11 10 15 15 C 1.55053 * 110.02530 * 265.58163 * 8 6 5 16 16 C 1.48140 * 104.39244 * 39.46139 * 5 4 2 17 17 C 1.54290 * 110.34436 * 122.17708 * 2 1 3 18 18 H 1.08999 * 110.33793 * 237.74286 * 17 2 1 19 19 N 1.46503 * 110.34043 * 359.97438 * 17 2 1 20 20 C 1.36933 * 119.99844 * 205.00492 * 19 17 2 21 21 H 1.07997 * 120.00233 * 359.97438 * 20 19 17 22 22 C 1.38817 * 119.99860 * 180.02562 * 20 19 17 23 23 N 1.31615 * 119.99561 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99922 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46880 * 60.00540 * 24 22 20 26 26 H 1.48505 * 109.47217 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47636 * 300.00483 * 24 22 20 28 28 H 1.08999 * 109.47069 * 59.30017 * 1 2 3 29 29 H 1.08998 * 109.47167 * 179.29566 * 1 2 3 30 30 H 1.08994 * 109.47518 * 299.29869 * 1 2 3 31 31 H 1.09002 * 109.46864 * 60.69986 * 3 2 1 32 32 H 1.08996 * 109.47296 * 180.70176 * 3 2 1 33 33 H 1.09006 * 109.46975 * 300.70129 * 3 2 1 34 34 H 1.09001 * 110.40463 * 336.04945 * 4 2 1 35 35 H 1.08999 * 110.40897 * 98.47551 * 4 2 1 36 36 H 1.09001 * 109.64553 * 286.32128 * 10 8 6 37 37 H 1.09004 * 109.64502 * 46.61857 * 10 8 6 38 38 H 1.08998 * 110.32252 * 90.98963 * 11 10 8 39 39 H 1.09000 * 110.31991 * 213.08955 * 11 10 8 40 40 H 1.08992 * 110.79184 * 316.54199 * 15 8 6 41 41 H 1.09006 * 110.78914 * 80.01069 * 15 8 6 42 42 H 1.08999 * 110.40854 * 201.68991 * 16 5 4 43 43 H 1.08999 * 110.51264 * 79.30806 * 16 5 4 44 44 H 0.96993 * 120.00011 * 25.00126 * 19 17 2 45 45 H 0.97005 * 119.99338 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0609 1.4349 0.0000 4 6 2.0667 -0.7708 -1.2253 5 7 3.2664 -1.4824 -0.7212 6 6 4.4424 -1.6678 -1.3529 7 8 5.3668 -2.1949 -0.7712 8 6 4.6087 -1.2200 -2.7822 9 1 3.9329 -0.3917 -2.9947 10 6 6.0646 -0.7903 -3.0338 11 6 6.2882 -0.6675 -4.5542 12 16 5.1038 -1.8415 -5.3059 13 8 4.1523 -1.1213 -6.0775 14 8 5.8183 -2.9212 -5.8914 15 6 4.3208 -2.4006 -3.7453 16 6 2.8801 -1.9416 0.6333 17 6 2.0663 -0.7704 1.2245 18 1 2.7095 -0.1270 1.8249 19 7 0.9554 -1.2785 2.0331 20 6 1.1370 -1.5257 3.3677 21 1 2.0993 -1.3466 3.8240 22 6 0.0845 -2.0077 4.1338 23 7 -1.0881 -2.2264 3.5775 24 14 0.3325 -2.3457 5.9541 25 1 0.7308 -1.0906 6.6408 26 1 -0.9350 -2.8496 6.5412 27 1 1.3986 -3.3646 6.1277 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3634 0.5029 0.8961 31 1 1.7153 1.9502 0.8962 32 1 3.1507 1.4191 -0.0126 33 1 1.6949 1.9578 -0.8837 34 1 1.3234 -1.4845 -1.5808 35 1 2.3400 -0.0775 -2.0207 36 1 6.2502 0.1723 -2.5572 37 1 6.7435 -1.5374 -2.6227 38 1 6.0767 0.3486 -4.8871 39 1 7.3111 -0.9437 -4.8099 40 1 4.7884 -3.3167 -3.3849 41 1 3.2477 -2.5388 -3.8781 42 1 3.7671 -2.1312 1.2376 43 1 2.2645 -2.8390 0.5712 44 1 0.0912 -1.4397 1.6233 45 1 -1.8234 -2.5635 4.1129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996016521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:58 Heat of formation + Delta-G solvation = -83.097152 kcal Electronic energy + Delta-G solvation = -27362.308235 eV Core-core repulsion = 23507.743957 eV Total energy + Delta-G solvation = -3854.564278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.35542 -38.51560 -37.39009 -36.41966 -35.93086 -34.28966 -33.10326 -31.05348 -30.51861 -28.02020 -27.10703 -26.29599 -25.86274 -24.02127 -22.56062 -21.45522 -19.30728 -19.15811 -18.56643 -17.84489 -17.31468 -17.00569 -16.28686 -16.11071 -15.62209 -15.22922 -14.89506 -14.59692 -14.42077 -14.08254 -13.88099 -13.79528 -13.62679 -13.08920 -12.79481 -12.64604 -12.61052 -12.51627 -12.36761 -12.20960 -11.92628 -11.83407 -11.74449 -11.43973 -11.37242 -11.19528 -11.00794 -10.96162 -10.80610 -10.67128 -10.56544 -10.26070 -9.97817 -9.77469 -9.67798 -9.07109 -8.54919 -7.10590 -5.88283 -3.18122 -0.36170 2.05513 2.52138 2.92862 3.23210 3.38588 3.43747 3.44210 3.62346 3.93855 4.13966 4.16844 4.36929 4.44171 4.50439 4.58708 4.71959 4.91804 5.03468 5.08464 5.15667 5.24426 5.41065 5.43173 5.51108 5.56422 5.61682 5.68641 5.71834 5.83941 5.92743 6.09280 6.18145 6.21111 6.25797 6.34525 6.45118 6.54995 6.76124 6.86908 7.61667 7.65535 8.12961 8.30557 9.42572 9.96022 10.30945 11.33759 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.023495 B = 0.002826 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.474169 B = 9907.078825 C =10260.371868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 C -0.132 4.132 4 C 0.105 3.895 5 N -0.613 5.613 6 C 0.546 3.454 7 O -0.541 6.541 8 C -0.110 4.110 9 H 0.113 0.887 10 C -0.102 4.102 11 C -0.589 4.589 12 S 2.392 3.608 13 O -0.934 6.934 14 O -0.936 6.936 15 C -0.577 4.577 16 C 0.081 3.919 17 C 0.176 3.824 18 H 0.064 0.936 19 N -0.715 5.715 20 C -0.249 4.249 21 H 0.070 0.930 22 C -0.008 4.008 23 N -0.931 5.931 24 Si 0.908 3.092 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.391 0.609 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.209 6.195 -17.011 20.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C -0.190 4.190 4 C -0.018 4.018 5 N -0.346 5.346 6 C 0.332 3.668 7 O -0.419 6.419 8 C -0.133 4.133 9 H 0.131 0.869 10 C -0.140 4.140 11 C -0.719 4.719 12 S 2.575 3.425 13 O -0.931 6.931 14 O -0.933 6.933 15 C -0.707 4.707 16 C -0.044 4.044 17 C 0.064 3.936 18 H 0.082 0.918 19 N -0.357 5.357 20 C -0.380 4.380 21 H 0.088 0.912 22 C -0.204 4.204 23 N -0.578 5.578 24 Si 0.738 3.262 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.229 0.771 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.637 5.608 -17.502 21.235 hybrid contribution -0.156 -0.124 1.734 1.746 sum 10.481 5.483 -15.767 19.711 Atomic orbital electron populations 1.21686 0.92931 1.02436 1.01777 1.21774 0.96820 0.95368 0.95078 1.21817 1.00276 0.95001 1.01877 1.22697 0.86828 0.95403 0.96900 1.49061 1.12317 1.54534 1.18637 1.19392 0.81369 0.79357 0.86657 1.90713 1.39151 1.44720 1.67286 1.21963 0.99390 0.97463 0.94435 0.86895 1.21811 0.94756 1.05621 0.91861 1.30489 1.17159 1.17187 1.07038 1.09043 0.77908 0.77519 0.78022 1.93634 1.60227 1.72828 1.66420 1.93626 1.72473 1.52554 1.74645 1.30693 1.14337 1.07226 1.18403 1.23661 0.99831 1.00179 0.80703 1.21116 0.90325 0.91897 0.90290 0.91824 1.42697 1.09340 1.77229 1.06479 1.19227 0.96568 1.37022 0.85150 0.91158 1.24734 0.95726 1.01702 0.98242 1.69638 1.01605 1.51128 1.35471 0.86268 0.76758 0.78091 0.85054 1.21196 1.21662 1.21161 0.93562 0.91880 0.90829 0.91921 0.93082 0.92951 0.90640 0.90673 0.88445 0.87965 0.84295 0.83976 0.83614 0.83739 0.90733 0.90619 0.77142 0.93306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 7.11 37.15 0.26 -1.63 16 2 C -0.09 -1.23 1.03 -153.11 -0.16 -1.39 16 3 C -0.13 -1.59 8.23 37.16 0.31 -1.28 16 4 C 0.10 1.23 5.98 -2.32 -0.01 1.22 16 5 N -0.61 -8.56 3.32 -169.18 -0.56 -9.12 16 6 C 0.55 7.30 6.98 -10.99 -0.08 7.23 16 7 O -0.54 -9.17 16.25 5.56 0.09 -9.08 16 8 C -0.11 -0.95 2.68 -90.23 -0.24 -1.19 16 9 H 0.11 0.72 6.40 -51.93 -0.33 0.39 16 10 C -0.10 -0.72 5.58 -25.67 -0.14 -0.86 16 11 C -0.59 -2.98 7.26 37.77 0.27 -2.71 16 12 S 2.39 18.21 6.10 -107.50 -0.66 17.55 16 13 O -0.93 -9.96 18.14 -57.73 -1.05 -11.01 16 14 O -0.94 -10.58 18.15 -57.73 -1.05 -11.63 16 15 C -0.58 -4.34 6.66 38.24 0.25 -4.09 16 16 C 0.08 1.41 6.79 -2.41 -0.02 1.39 16 17 C 0.18 3.17 3.35 -66.53 -0.22 2.95 16 18 H 0.06 1.21 7.66 -51.93 -0.40 0.81 16 19 N -0.71 -16.19 4.60 -52.07 -0.24 -16.43 16 20 C -0.25 -6.48 9.96 -15.06 -0.15 -6.63 16 21 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 23 N -0.93 -26.53 13.06 55.49 0.72 -25.81 16 24 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 1.01 6.87 -51.93 -0.36 0.65 16 30 H 0.07 1.25 7.84 -51.93 -0.41 0.84 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.86 7.85 -51.93 -0.41 0.45 16 35 H 0.07 0.66 6.24 -51.93 -0.32 0.34 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.82 7.43 -51.93 -0.39 0.44 16 38 H 0.14 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.14 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.15 1.12 8.10 -51.93 -0.42 0.70 16 41 H 0.14 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.40 7.85 -51.93 -0.41 1.00 16 43 H 0.08 1.43 8.06 -51.93 -0.42 1.01 16 44 H 0.39 9.20 5.09 -40.82 -0.21 8.99 16 45 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 368.27 15.07 5.55 5.55 Total: -1.00 -35.28 368.27 -9.22 -44.50 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.99 Total: 6.18 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -0.02 Total: -7.29 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.08 Total: -51.36 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -2.00 Total: -31.71 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 18.21 SS G_CDS: -0.66 Total: 17.55 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.28 -9.22 -44.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996016521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.596 kcal (2) G-P(sol) polarization free energy of solvation -35.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds