Wall clock time and date at job start Tue Mar 31 2020 05:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 110.30744 * 2 1 4 4 C 1.54390 * 110.34647 * 237.82479 * 2 1 3 5 5 N 1.48310 * 104.53933 * 217.33607 * 4 2 1 6 6 C 1.34776 * 127.76983 * 219.51441 * 5 4 2 7 7 O 1.21281 * 120.00362 * 174.90992 * 6 5 4 8 8 C 1.50700 * 119.99919 * 354.90804 * 6 5 4 9 9 H 1.08994 * 110.01379 * 26.95840 * 8 6 5 10 10 C 1.53875 * 110.02786 * 148.34355 * 8 6 5 11 11 C 1.54164 * 108.70575 * 166.47049 * 10 8 6 12 12 S 1.82925 * 105.08632 * 332.09082 * 11 10 8 13 13 O 1.42102 * 109.35305 * 115.52242 * 12 11 10 14 14 O 1.42102 * 109.35241 * 248.59431 * 12 11 10 15 15 C 1.55053 * 110.02530 * 265.58163 * 8 6 5 16 16 C 1.48140 * 104.39244 * 39.46139 * 5 4 2 17 17 C 1.54290 * 110.34436 * 122.17708 * 2 1 3 18 18 H 1.08999 * 110.33793 * 237.74286 * 17 2 1 19 19 N 1.46503 * 110.34043 * 359.97438 * 17 2 1 20 20 C 1.36933 * 119.99844 * 205.00492 * 19 17 2 21 21 H 1.07997 * 120.00233 * 359.97438 * 20 19 17 22 22 C 1.38817 * 119.99860 * 180.02562 * 20 19 17 23 23 N 1.31615 * 119.99561 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99922 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46880 * 60.00540 * 24 22 20 26 26 H 1.48505 * 109.47217 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47636 * 300.00483 * 24 22 20 28 28 H 1.08999 * 109.47069 * 59.30017 * 1 2 3 29 29 H 1.08998 * 109.47167 * 179.29566 * 1 2 3 30 30 H 1.08994 * 109.47518 * 299.29869 * 1 2 3 31 31 H 1.09002 * 109.46864 * 60.69986 * 3 2 1 32 32 H 1.08996 * 109.47296 * 180.70176 * 3 2 1 33 33 H 1.09006 * 109.46975 * 300.70129 * 3 2 1 34 34 H 1.09001 * 110.40463 * 336.04945 * 4 2 1 35 35 H 1.08999 * 110.40897 * 98.47551 * 4 2 1 36 36 H 1.09001 * 109.64553 * 286.32128 * 10 8 6 37 37 H 1.09004 * 109.64502 * 46.61857 * 10 8 6 38 38 H 1.08998 * 110.32252 * 90.98963 * 11 10 8 39 39 H 1.09000 * 110.31991 * 213.08955 * 11 10 8 40 40 H 1.08992 * 110.79184 * 316.54199 * 15 8 6 41 41 H 1.09006 * 110.78914 * 80.01069 * 15 8 6 42 42 H 1.08999 * 110.40854 * 201.68991 * 16 5 4 43 43 H 1.08999 * 110.51264 * 79.30806 * 16 5 4 44 44 H 0.96993 * 120.00011 * 25.00126 * 19 17 2 45 45 H 0.97005 * 119.99338 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0609 1.4349 0.0000 4 6 2.0667 -0.7708 -1.2253 5 7 3.2664 -1.4824 -0.7212 6 6 4.4424 -1.6678 -1.3529 7 8 5.3668 -2.1949 -0.7712 8 6 4.6087 -1.2200 -2.7822 9 1 3.9329 -0.3917 -2.9947 10 6 6.0646 -0.7903 -3.0338 11 6 6.2882 -0.6675 -4.5542 12 16 5.1038 -1.8415 -5.3059 13 8 4.1523 -1.1213 -6.0775 14 8 5.8183 -2.9212 -5.8914 15 6 4.3208 -2.4006 -3.7453 16 6 2.8801 -1.9416 0.6333 17 6 2.0663 -0.7704 1.2245 18 1 2.7095 -0.1270 1.8249 19 7 0.9554 -1.2785 2.0331 20 6 1.1370 -1.5257 3.3677 21 1 2.0993 -1.3466 3.8240 22 6 0.0845 -2.0077 4.1338 23 7 -1.0881 -2.2264 3.5775 24 14 0.3325 -2.3457 5.9541 25 1 0.7308 -1.0906 6.6408 26 1 -0.9350 -2.8496 6.5412 27 1 1.3986 -3.3646 6.1277 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3634 0.5029 0.8961 31 1 1.7153 1.9502 0.8962 32 1 3.1507 1.4191 -0.0126 33 1 1.6949 1.9578 -0.8837 34 1 1.3234 -1.4845 -1.5808 35 1 2.3400 -0.0775 -2.0207 36 1 6.2502 0.1723 -2.5572 37 1 6.7435 -1.5374 -2.6227 38 1 6.0767 0.3486 -4.8871 39 1 7.3111 -0.9437 -4.8099 40 1 4.7884 -3.3167 -3.3849 41 1 3.2477 -2.5388 -3.8781 42 1 3.7671 -2.1312 1.2376 43 1 2.2645 -2.8390 0.5712 44 1 0.0912 -1.4397 1.6233 45 1 -1.8234 -2.5635 4.1129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996016521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:57 Heat of formation + Delta-G solvation = -109.893864 kcal Electronic energy + Delta-G solvation = -27363.470227 eV Core-core repulsion = 23507.743957 eV Total energy + Delta-G solvation = -3855.726270 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.47255 -39.67137 -38.10595 -37.14357 -36.68313 -35.93941 -34.45227 -32.72241 -31.25565 -29.40238 -28.20871 -27.37445 -26.69264 -25.65498 -23.67798 -22.54656 -20.26720 -19.90809 -19.81334 -19.20781 -18.60325 -17.69954 -17.20817 -17.01873 -16.69462 -16.31958 -16.17750 -15.76932 -15.53723 -15.27675 -14.98124 -14.86567 -14.73489 -14.37350 -13.91684 -13.57935 -13.30006 -13.26944 -13.24665 -13.16225 -13.07982 -12.97423 -12.86561 -12.76040 -12.66802 -12.52468 -12.14824 -12.12157 -12.05370 -11.92476 -11.80834 -11.44703 -11.37142 -11.31230 -10.96334 -10.80709 -9.79065 -9.01511 -7.96303 -5.23976 -0.94644 1.33995 1.46965 1.48265 1.54253 1.65511 1.88391 2.55133 2.63765 3.03338 3.21419 3.35809 3.50246 3.52408 3.59433 3.74573 3.83197 3.96071 3.98330 4.02009 4.18294 4.37296 4.40184 4.43102 4.55123 4.59025 4.64786 4.80137 4.85049 4.90019 4.92699 4.94624 5.00223 5.06239 5.11665 5.13886 5.19948 5.36867 5.49857 5.50727 5.61313 6.26771 6.57262 7.04812 7.34800 8.08753 8.33705 9.26135 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.023495 B = 0.002826 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.474169 B = 9907.078825 C =10260.371868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 C -0.127 4.127 4 C 0.106 3.894 5 N -0.612 5.612 6 C 0.542 3.458 7 O -0.583 6.583 8 C -0.106 4.106 9 H 0.147 0.853 10 C -0.105 4.105 11 C -0.561 4.561 12 S 2.407 3.593 13 O -0.963 6.963 14 O -0.979 6.979 15 C -0.579 4.579 16 C 0.091 3.909 17 C 0.170 3.830 18 H 0.050 0.950 19 N -0.724 5.724 20 C -0.246 4.246 21 H 0.069 0.931 22 C -0.066 4.066 23 N -0.963 5.963 24 Si 0.965 3.035 25 H -0.279 1.279 26 H -0.295 1.295 27 H -0.283 1.283 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.169 0.831 39 H 0.161 0.839 40 H 0.139 0.861 41 H 0.159 0.841 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.385 0.615 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.249 8.320 -19.113 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.084 4.084 3 C -0.185 4.185 4 C -0.016 4.016 5 N -0.344 5.344 6 C 0.331 3.669 7 O -0.463 6.463 8 C -0.128 4.128 9 H 0.165 0.835 10 C -0.144 4.144 11 C -0.693 4.693 12 S 2.594 3.406 13 O -0.960 6.960 14 O -0.976 6.976 15 C -0.708 4.708 16 C -0.036 4.036 17 C 0.059 3.941 18 H 0.068 0.932 19 N -0.367 5.367 20 C -0.378 4.378 21 H 0.087 0.913 22 C -0.259 4.259 23 N -0.613 5.613 24 Si 0.795 3.205 25 H -0.205 1.205 26 H -0.221 1.221 27 H -0.210 1.210 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.106 0.894 38 H 0.187 0.813 39 H 0.179 0.821 40 H 0.157 0.843 41 H 0.177 0.823 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.222 0.778 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.695 7.738 -19.659 24.148 hybrid contribution -0.384 -0.765 2.399 2.547 sum 11.311 6.974 -17.260 21.782 Atomic orbital electron populations 1.21590 0.93334 1.01200 1.01994 1.21735 0.96408 0.96539 0.93763 1.21789 1.00619 0.93307 1.02745 1.22875 0.85968 0.95987 0.96738 1.49070 1.13475 1.54713 1.17133 1.20271 0.80142 0.78212 0.88234 1.90698 1.40494 1.46410 1.68712 1.22086 1.01487 0.98693 0.90546 0.83489 1.21864 0.93300 1.06069 0.93166 1.30338 1.16790 1.17416 1.04752 1.08453 0.77588 0.77023 0.77535 1.93593 1.61633 1.73100 1.67702 1.93572 1.73191 1.54852 1.76008 1.30719 1.15479 1.06783 1.17866 1.23142 0.98305 0.99134 0.82987 1.21280 0.89114 0.92178 0.91546 0.93199 1.42809 1.10439 1.77523 1.05909 1.19548 0.96210 1.35264 0.86800 0.91314 1.25417 0.95777 1.02821 1.01857 1.69771 1.02158 1.52892 1.36456 0.85343 0.76255 0.77964 0.80961 1.20508 1.22116 1.20954 0.89771 0.93940 0.93948 0.93675 0.92472 0.89449 0.89940 0.85984 0.86716 0.89388 0.81290 0.82148 0.84293 0.82263 0.93079 0.92683 0.77811 0.93952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.44 7.11 71.98 0.51 -2.93 16 2 C -0.08 -2.15 1.03 -51.28 -0.05 -2.21 16 3 C -0.13 -2.66 8.23 71.98 0.59 -2.07 16 4 C 0.11 2.14 5.98 86.50 0.52 2.66 16 5 N -0.61 -16.14 3.32 -807.55 -2.68 -18.82 16 6 C 0.54 13.54 6.98 87.66 0.61 14.15 16 7 O -0.58 -19.61 16.25 -3.03 -0.05 -19.66 16 8 C -0.11 -1.45 2.68 -10.54 -0.03 -1.48 16 9 H 0.15 1.00 6.40 -2.39 -0.02 0.99 16 10 C -0.11 -1.09 5.58 31.28 0.17 -0.92 16 11 C -0.56 -3.25 7.26 72.38 0.53 -2.73 16 12 S 2.41 30.77 6.10 -56.49 -0.34 30.43 16 13 O -0.96 -17.94 18.14 -127.47 -2.31 -20.26 16 14 O -0.98 -21.11 18.15 -127.47 -2.31 -23.43 16 15 C -0.58 -7.31 6.66 72.69 0.48 -6.83 16 16 C 0.09 3.23 6.79 86.53 0.59 3.81 16 17 C 0.17 6.19 3.35 45.90 0.15 6.35 16 18 H 0.05 1.94 7.66 -2.39 -0.02 1.92 16 19 N -0.72 -33.89 4.60 -318.64 -1.46 -35.36 16 20 C -0.25 -13.19 9.96 84.04 0.84 -12.36 16 21 H 0.07 3.62 7.83 -2.91 -0.02 3.59 16 22 C -0.07 -3.65 5.50 84.86 0.47 -3.19 16 23 N -0.96 -56.49 13.06 21.65 0.28 -56.20 16 24 Si 0.97 45.35 29.55 68.60 2.03 47.38 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 27 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.04 1.35 6.87 -2.39 -0.02 1.33 16 30 H 0.04 1.44 7.84 -2.39 -0.02 1.42 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.08 1.61 7.85 -2.39 -0.02 1.60 16 35 H 0.12 1.38 6.24 -2.39 -0.01 1.37 16 36 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 1.22 7.43 -2.39 -0.02 1.21 16 38 H 0.17 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.16 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.14 2.00 8.10 -2.39 -0.02 1.98 16 41 H 0.16 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.05 2.02 7.85 -2.39 -0.02 2.00 16 43 H 0.05 2.17 8.06 -2.39 -0.02 2.15 16 44 H 0.39 18.82 5.09 -92.71 -0.47 18.34 16 45 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 Total: -1.00 -80.59 368.27 -0.95 -81.54 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.52 Total: 22.10 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 5.38 Total: -7.72 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -3.86 Total: -110.39 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: -4.68 Total: -63.34 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: 30.77 SS G_CDS: -0.34 Total: 30.43 kcal Total: -80.59 -0.95 -81.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996016521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.352 kcal (2) G-P(sol) polarization free energy of solvation -80.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds