Wall clock time and date at job start Tue Mar 31 2020 04:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99937 * 2 1 4 4 H 1.48500 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47009 * 300.00058 * 3 2 1 6 6 H 1.48504 * 109.46910 * 59.99872 * 3 2 1 7 7 C 1.38810 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00043 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99945 * 180.02562 * 9 7 2 11 11 C 1.53031 * 109.45883 * 205.00496 * 10 9 7 12 12 C 1.53191 * 109.31498 * 178.62777 * 11 10 9 13 13 N 1.46935 * 108.77547 * 54.62682 * 12 11 10 14 14 C 1.34778 * 120.62522 * 126.37104 * 13 12 11 15 15 O 1.21276 * 120.00520 * 4.64946 * 14 13 12 16 16 C 1.50701 * 119.99581 * 184.65241 * 14 13 12 17 17 H 1.08998 * 109.62813 * 330.00451 * 16 14 13 18 18 C 1.53037 * 109.54890 * 209.76347 * 16 14 13 19 19 C 1.52587 * 109.90423 * 176.44185 * 18 16 14 20 20 C 1.52591 * 110.64257 * 70.03760 * 19 18 16 21 21 C 1.53036 * 109.98576 * 290.01837 * 20 19 18 22 22 S 1.81665 * 109.00236 * 63.64507 * 21 20 19 23 23 O 1.42102 * 108.66449 * 60.03257 * 22 21 20 24 24 O 1.42101 * 108.66532 * 191.27918 * 22 21 20 25 25 C 1.46921 * 118.73810 * 306.65072 * 13 12 11 26 26 C 1.52766 * 109.01202 * 53.30784 * 25 13 12 27 27 H 0.97003 * 119.99536 * 0.02562 * 1 2 3 28 28 H 0.96991 * 119.99993 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.45532 * 324.97549 * 10 9 7 30 30 H 1.09001 * 109.50524 * 58.67529 * 11 10 9 31 31 H 1.09005 * 109.52275 * 298.58822 * 11 10 9 32 32 H 1.09000 * 109.58302 * 294.84980 * 12 11 10 33 33 H 1.08993 * 109.70957 * 174.48729 * 12 11 10 34 34 H 1.08997 * 109.38315 * 56.33682 * 18 16 14 35 35 H 1.09004 * 109.38548 * 296.54680 * 18 16 14 36 36 H 1.09000 * 109.24633 * 190.33944 * 19 18 16 37 37 H 1.09006 * 109.24078 * 309.74331 * 19 18 16 38 38 H 1.08996 * 109.38684 * 50.17080 * 20 19 18 39 39 H 1.08997 * 109.38935 * 169.96363 * 20 19 18 40 40 H 1.09001 * 109.55079 * 183.50164 * 21 20 19 41 41 H 1.09001 * 109.55048 * 303.79048 * 21 20 19 42 42 H 1.09004 * 109.58543 * 173.14054 * 25 13 12 43 43 H 1.08999 * 109.58685 * 293.56353 * 25 13 12 44 44 H 1.08995 * 109.56432 * 185.55179 * 26 25 13 45 45 H 1.09002 * 109.36018 * 65.49396 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.1805 -4.7521 -0.6104 12 6 1.9619 -6.0695 -0.6403 13 7 2.4412 -6.3658 0.7167 14 6 2.1722 -7.5527 1.2960 15 8 1.6026 -8.4192 0.6671 16 6 2.5793 -7.8030 2.7252 17 1 3.4744 -7.2259 2.9574 18 6 2.8653 -9.2934 2.9227 19 6 3.3631 -9.5430 4.3433 20 6 2.2352 -9.3432 5.3514 21 6 1.8720 -7.8594 5.4427 22 16 1.2291 -7.3079 3.8356 23 8 0.0747 -8.0742 3.5203 24 8 1.1416 -5.8896 3.8432 25 6 3.2139 -5.3415 1.4324 26 6 2.4231 -4.0344 1.4369 27 1 -0.4849 0.8401 -0.0004 28 1 0.3557 -2.3880 -0.0005 29 1 2.9685 -3.5504 -0.5904 30 1 0.9016 -4.4716 -1.6261 31 1 0.2811 -4.8763 -0.0073 32 1 2.8123 -5.9746 -1.3155 33 1 1.3118 -6.8748 -0.9821 34 1 3.6266 -9.6130 2.2112 35 1 1.9511 -9.8626 2.7544 36 1 3.7359 -10.5645 4.4191 37 1 4.1726 -8.8483 4.5676 38 1 1.3608 -9.9108 5.0332 39 1 2.5586 -9.6958 6.3308 40 1 1.1097 -7.7169 6.2087 41 1 2.7602 -7.2815 5.6980 42 1 3.3875 -5.6654 2.4586 43 1 4.1684 -5.1861 0.9296 44 1 3.0287 -3.2430 1.8784 45 1 1.5123 -4.1651 2.0212 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996662933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:12 Heat of formation + Delta-G solvation = -92.272699 kcal Electronic energy + Delta-G solvation = -27956.803688 eV Core-core repulsion = 24101.841529 eV Total energy + Delta-G solvation = -3854.962159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -40.38521 -37.99148 -37.20350 -36.83142 -36.20487 -34.53344 -32.72857 -31.86984 -30.78291 -29.33706 -28.30149 -25.24161 -24.20143 -23.03451 -22.46501 -21.42682 -20.50385 -19.36796 -18.80200 -17.64301 -17.14122 -17.03423 -16.76536 -16.00962 -15.80123 -15.16217 -14.81943 -14.76862 -14.35464 -14.21170 -13.83313 -13.75368 -13.59199 -13.38259 -13.33679 -12.98487 -12.46177 -12.27151 -12.18926 -12.13821 -12.08304 -11.89964 -11.71884 -11.60148 -11.36725 -10.95571 -10.89969 -10.85248 -10.78062 -10.58775 -10.42494 -10.17099 -9.88960 -9.76893 -9.64961 -8.88102 -8.61513 -6.93739 -5.73931 -3.03013 -0.40527 2.29465 2.46297 2.74520 3.42973 3.44348 3.49189 3.52069 3.57565 3.99279 4.04450 4.13029 4.31949 4.45496 4.52269 4.60066 4.72035 4.94485 5.04878 5.09867 5.28937 5.32492 5.34319 5.35293 5.40148 5.48277 5.54972 5.57596 5.64593 5.71968 5.77268 5.93955 5.96908 6.24741 6.36005 6.43307 6.54812 6.66574 6.91557 7.16586 7.30577 7.71473 7.95349 8.44159 9.55348 10.13475 10.48274 11.48741 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020268 B = 0.003345 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.142940 B = 8369.119254 C = 8915.075508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.143 4.143 12 C 0.115 3.885 13 N -0.597 5.597 14 C 0.530 3.470 15 O -0.521 6.521 16 C -0.606 4.606 17 H 0.158 0.842 18 C -0.091 4.091 19 C -0.140 4.140 20 C -0.113 4.113 21 C -0.605 4.605 22 S 2.419 3.581 23 O -0.916 6.916 24 O -0.911 6.911 25 C 0.103 3.897 26 C -0.157 4.157 27 H 0.254 0.746 28 H 0.385 0.615 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.381 -21.285 10.840 25.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.068 3.932 11 C -0.182 4.182 12 C -0.007 4.007 13 N -0.330 5.330 14 C 0.315 3.685 15 O -0.398 6.398 16 C -0.715 4.715 17 H 0.175 0.825 18 C -0.130 4.130 19 C -0.178 4.178 20 C -0.152 4.152 21 C -0.734 4.734 22 S 2.596 3.404 23 O -0.913 6.913 24 O -0.908 6.908 25 C -0.020 4.020 26 C -0.198 4.198 27 H 0.064 0.936 28 H 0.218 0.782 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.414 -21.148 10.246 24.960 hybrid contribution 1.065 0.893 0.428 1.454 sum 9.479 -20.255 10.673 24.780 Atomic orbital electron populations 1.69682 1.05107 1.25502 1.57645 1.24754 0.95495 0.97677 1.03067 0.86137 0.78717 0.84277 0.77153 1.20604 1.21946 1.21915 1.19269 0.90964 0.84080 1.42618 0.91126 1.42432 1.05873 0.99650 1.88414 1.20174 0.94343 0.86120 0.92528 1.22254 0.99416 0.93959 1.02545 1.21734 0.99045 0.98428 0.81462 1.48198 1.53366 1.14278 1.17175 1.19111 0.80185 0.82766 0.86473 1.90723 1.41967 1.43455 1.63609 1.30569 1.21912 1.09159 1.09851 0.82483 1.21212 1.04816 0.89269 0.97685 1.21746 0.98451 1.04331 0.93253 1.21339 1.00192 0.91706 1.01922 1.30297 1.13644 1.07106 1.22377 1.08477 0.77027 0.76085 0.78792 1.93619 1.42421 1.72788 1.82444 1.93690 1.85180 1.26474 1.85449 1.21935 0.94965 0.89242 0.95884 1.22674 1.01247 0.94037 1.01807 0.93564 0.78173 0.93438 0.90188 0.91562 0.91012 0.89087 0.89203 0.88692 0.89208 0.90538 0.89488 0.89234 0.84389 0.84569 0.90961 0.90919 0.90423 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -18.21 5.12 -53.39 -0.27 -18.48 16 10 C 0.18 3.51 2.73 -67.89 -0.19 3.32 16 11 C -0.14 -2.45 5.55 -26.62 -0.15 -2.60 16 12 C 0.12 1.69 6.42 -3.71 -0.02 1.67 16 13 N -0.60 -8.59 2.98 -173.03 -0.52 -9.11 16 14 C 0.53 7.62 6.75 -10.98 -0.07 7.55 16 15 O -0.52 -8.97 15.68 5.56 0.09 -8.88 16 16 C -0.61 -6.10 2.08 -27.86 -0.06 -6.16 16 17 H 0.16 1.05 6.00 -51.93 -0.31 0.74 16 18 C -0.09 -0.72 4.55 -26.92 -0.12 -0.84 16 19 C -0.14 -0.66 5.62 -27.15 -0.15 -0.81 16 20 C -0.11 -0.58 5.73 -26.92 -0.15 -0.74 16 21 C -0.60 -3.77 6.35 37.18 0.24 -3.53 16 22 S 2.42 27.81 4.66 -107.50 -0.50 27.30 16 23 O -0.92 -13.95 17.92 -57.82 -1.04 -14.99 16 24 O -0.91 -13.62 17.03 -57.82 -0.98 -14.60 16 25 C 0.10 1.37 6.25 -3.93 -0.02 1.34 16 26 C -0.16 -2.78 5.64 -26.83 -0.15 -2.93 16 27 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.38 10.45 7.80 -40.82 -0.32 10.13 16 29 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 1.35 7.03 -51.93 -0.37 0.99 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.88 7.84 -51.93 -0.41 0.47 16 36 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.24 8.09 -51.93 -0.42 -0.18 16 38 H 0.09 0.49 8.01 -51.93 -0.42 0.08 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.14 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.77 5.09 -51.93 -0.26 0.50 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.08 1.56 7.36 -51.93 -0.38 1.18 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -37.24 363.29 -10.23 -47.47 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -7.08 Total: 7.08 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -1.10 Total: -10.93 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.06 Total: -55.26 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -1.93 Total: -38.47 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 27.81 SS G_CDS: -0.50 Total: 27.30 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.24 -10.23 -47.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996662933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.799 kcal (2) G-P(sol) polarization free energy of solvation -37.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds