Wall clock time and date at job start Tue Mar 31 2020 05:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50692 * 110.28045 * 2 1 4 4 O 1.21283 * 120.00022 * 242.56296 * 3 2 1 5 5 N 1.34780 * 120.00445 * 62.57157 * 3 2 1 6 6 C 1.46924 * 120.62402 * 5.00741 * 5 3 2 7 7 C 1.52765 * 109.00842 * 233.58521 * 6 5 3 8 8 C 1.53042 * 109.38284 * 305.59448 * 7 6 5 9 9 N 1.46500 * 109.44700 * 181.25308 * 8 7 6 10 10 C 1.36936 * 120.00238 * 84.93926 * 9 8 7 11 11 H 1.08005 * 119.99924 * 359.97438 * 10 9 8 12 12 C 1.38811 * 120.00151 * 180.02562 * 10 9 8 13 13 N 1.31620 * 120.00056 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00035 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47642 * 89.99752 * 14 12 10 16 16 H 1.48505 * 109.47114 * 209.99729 * 14 12 10 17 17 H 1.48501 * 109.47476 * 329.99467 * 14 12 10 18 18 C 1.53037 * 109.53929 * 61.23780 * 8 7 6 19 19 C 1.46920 * 120.63392 * 185.29072 * 5 3 2 20 20 C 1.54167 * 110.31695 * 122.22489 * 2 1 3 21 21 C 1.53877 * 108.70399 * 146.81178 * 20 2 1 22 22 C 1.55044 * 106.62021 * 312.81847 * 21 20 2 23 23 S 1.82915 * 110.31771 * 237.88536 * 2 1 3 24 24 O 1.42098 * 109.35241 * 125.57726 * 23 2 1 25 25 O 1.42094 * 109.35610 * 352.37199 * 23 2 1 26 26 H 1.08997 * 109.46796 * 177.33108 * 1 2 3 27 27 H 1.08998 * 109.46664 * 297.33164 * 1 2 3 28 28 H 1.08998 * 109.46913 * 57.33088 * 1 2 3 29 29 H 1.08999 * 109.59374 * 353.41915 * 6 5 3 30 30 H 1.09004 * 109.58646 * 113.84823 * 6 5 3 31 31 H 1.08994 * 109.56460 * 185.55483 * 7 6 5 32 32 H 1.08999 * 109.38756 * 65.51921 * 7 6 5 33 33 H 1.09001 * 109.45625 * 301.21544 * 8 7 6 34 34 H 0.96994 * 119.99903 * 264.93107 * 9 8 7 35 35 H 0.96995 * 119.99968 * 179.97438 * 13 12 10 36 36 H 1.09006 * 109.49372 * 178.68624 * 18 8 7 37 37 H 1.08995 * 109.49989 * 58.58473 * 18 8 7 38 38 H 1.09004 * 109.58705 * 246.15294 * 19 5 3 39 39 H 1.09004 * 109.58547 * 6.43566 * 19 5 3 40 40 H 1.08994 * 109.64718 * 26.95598 * 20 2 1 41 41 H 1.09003 * 109.64015 * 266.66180 * 20 2 1 42 42 H 1.08994 * 110.02584 * 193.52500 * 21 20 2 43 43 H 1.08998 * 110.02715 * 72.10684 * 21 20 2 44 44 H 1.09004 * 110.78954 * 160.70311 * 22 21 20 45 45 H 1.09003 * 110.79168 * 284.15910 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0524 1.4135 0.0000 4 8 2.7166 1.8146 -0.9322 5 7 1.7817 2.2321 1.0360 6 6 1.0731 1.7301 2.2211 7 6 -0.1386 2.6206 2.4906 8 6 0.3162 4.0778 2.5998 9 7 -0.8405 4.9295 2.8879 10 6 -1.2606 5.0995 4.1801 11 1 -0.7396 4.6054 4.9868 12 6 -2.3569 5.9061 4.4530 13 7 -2.9923 6.5078 3.4698 14 14 -2.9305 6.1375 6.2156 15 1 -2.2355 7.3060 6.8131 16 1 -4.3968 6.3721 6.2323 17 1 -2.6154 4.9184 7.0029 18 6 0.9551 4.5149 1.2797 19 6 2.1841 3.6446 0.9990 20 6 2.0654 -0.7709 1.2231 21 6 3.3806 -1.4668 0.8308 22 6 3.1223 -2.1708 -0.5262 23 16 2.1652 -0.9119 -1.4529 24 8 3.0602 -0.0791 -2.1772 25 8 1.0827 -1.5427 -2.1231 26 1 -0.3633 -1.0265 -0.0479 27 1 -0.3632 0.4718 0.9129 28 1 -0.3633 0.5547 -0.8651 29 1 0.7407 0.7075 2.0424 30 1 1.7398 1.7545 3.0831 31 1 -0.6145 2.3171 3.4230 32 1 -0.8497 2.5220 1.6703 33 1 1.0454 4.1712 3.4047 34 1 -1.3086 5.3730 2.1634 35 1 -3.7586 7.0711 3.6605 36 1 1.2576 5.5598 1.3504 37 1 0.2342 4.3983 0.4705 38 1 2.9434 3.8283 1.7593 39 1 2.5870 3.8841 0.0149 40 1 1.3346 -1.5172 1.5344 41 1 2.2487 -0.0761 2.0427 42 1 3.6535 -2.2026 1.5871 43 1 4.1756 -0.7289 0.7232 44 1 4.0620 -2.3922 -1.0323 45 1 2.5343 -3.0778 -0.3858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997094439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:43 Heat of formation + Delta-G solvation = -74.120969 kcal Electronic energy + Delta-G solvation = -28053.757847 eV Core-core repulsion = 24199.582806 eV Total energy + Delta-G solvation = -3854.175041 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.74642 -37.67568 -37.22656 -36.81187 -36.03144 -34.55781 -32.95984 -31.91510 -30.66543 -29.30463 -27.37268 -25.55609 -24.17082 -23.29127 -22.79112 -21.92729 -20.79566 -19.40313 -18.62941 -17.19095 -17.04676 -16.95577 -16.59721 -15.75331 -15.37794 -15.23898 -14.94646 -14.67232 -14.35881 -14.12119 -14.01499 -13.66759 -13.57408 -13.50295 -13.13741 -12.79326 -12.73298 -12.22888 -12.17256 -12.12908 -12.07517 -11.88602 -11.81973 -11.62004 -11.45569 -11.01752 -10.95017 -10.92713 -10.80117 -10.53372 -10.46179 -10.28759 -9.90436 -9.75919 -9.63524 -8.97102 -8.60325 -7.04597 -5.83580 -3.13317 -0.23989 2.28171 2.41488 2.83590 3.35978 3.37813 3.42742 3.45002 3.71262 3.93212 4.13472 4.17020 4.26135 4.50012 4.51772 4.57725 4.92410 4.98984 5.08012 5.19454 5.22405 5.25567 5.28066 5.32982 5.35669 5.41041 5.46499 5.48405 5.53967 5.65234 5.79740 5.85759 5.95416 6.15342 6.26944 6.30592 6.42665 6.50841 6.80031 6.95202 7.32887 7.61742 8.01682 8.34439 9.45766 10.02885 10.37360 11.38830 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.025716 B = 0.002988 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.539039 B = 9370.025739 C = 9581.275717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.559 4.559 3 C 0.538 3.462 4 O -0.507 6.507 5 N -0.593 5.593 6 C 0.088 3.912 7 C -0.154 4.154 8 C 0.179 3.821 9 N -0.724 5.724 10 C -0.242 4.242 11 H 0.070 0.930 12 C -0.012 4.012 13 N -0.931 5.931 14 Si 0.906 3.094 15 H -0.290 1.290 16 H -0.291 1.291 17 H -0.282 1.282 18 C -0.140 4.140 19 C 0.116 3.884 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.595 4.595 23 S 2.408 3.592 24 O -0.889 6.889 25 O -0.932 6.932 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.138 0.862 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.595 -18.943 -4.414 23.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.649 4.649 3 C 0.323 3.677 4 O -0.382 6.382 5 N -0.326 5.326 6 C -0.035 4.035 7 C -0.195 4.195 8 C 0.069 3.931 9 N -0.364 5.364 10 C -0.373 4.373 11 H 0.088 0.912 12 C -0.208 4.208 13 N -0.579 5.579 14 Si 0.737 3.263 15 H -0.217 1.217 16 H -0.218 1.218 17 H -0.208 1.208 18 C -0.179 4.179 19 C -0.006 4.006 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.724 4.724 23 S 2.586 3.414 24 O -0.886 6.886 25 O -0.929 6.929 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.218 0.782 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.106 0.894 44 H 0.156 0.844 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.767 -18.528 -5.678 23.206 hybrid contribution -0.635 0.148 1.777 1.893 sum 12.131 -18.380 -3.901 22.366 Atomic orbital electron populations 1.21823 0.86949 1.04748 1.05572 1.30435 1.08211 1.05708 1.20586 1.19155 0.80525 0.85064 0.83007 1.90968 1.37873 1.75316 1.34073 1.47978 1.56834 1.10378 1.17448 1.22286 0.95011 0.99263 0.86922 1.22654 0.96081 0.98363 1.02424 1.20153 0.90227 0.88947 0.93775 1.42434 1.32453 1.55170 1.06368 1.19212 1.09543 1.23823 0.84750 0.91195 1.24755 0.98592 1.00143 0.97322 1.69659 1.22880 1.35320 1.30045 0.86212 0.77824 0.77847 0.84382 1.21704 1.21777 1.20779 1.22225 0.96779 0.99530 0.99368 1.21693 0.97045 0.78703 1.03197 1.22465 0.97262 0.99745 0.96346 1.22201 0.98222 1.00097 0.95209 1.30722 1.15252 1.15658 1.10776 1.09066 0.77098 0.77876 0.77402 1.93716 1.63601 1.64489 1.66823 1.93599 1.54029 1.75298 1.69952 0.89684 0.88796 0.90694 0.88769 0.91272 0.90508 0.91999 0.93412 0.78224 0.93435 0.90374 0.91751 0.91313 0.89096 0.88379 0.87522 0.88122 0.89406 0.84390 0.84464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 7.65 37.16 0.28 -0.98 16 2 C -0.56 -5.56 0.74 -91.16 -0.07 -5.63 16 3 C 0.54 7.23 6.53 -10.99 -0.07 7.15 16 4 O -0.51 -8.71 13.41 -18.59 -0.25 -8.96 16 5 N -0.59 -7.54 2.97 -173.03 -0.51 -8.05 16 6 C 0.09 0.98 3.92 -3.93 -0.02 0.96 16 7 C -0.15 -2.32 5.40 -26.83 -0.14 -2.46 16 8 C 0.18 3.21 2.73 -67.89 -0.19 3.02 16 9 N -0.72 -17.09 5.12 -53.39 -0.27 -17.36 16 10 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 11 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 12 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 13 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 14 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.14 -2.19 5.55 -26.61 -0.15 -2.34 16 19 C 0.12 1.57 6.42 -3.71 -0.02 1.54 16 20 C -0.12 -0.75 4.29 -25.66 -0.11 -0.86 16 21 C -0.12 -0.64 6.48 -25.19 -0.16 -0.81 16 22 C -0.59 -3.52 7.31 38.24 0.28 -3.25 16 23 S 2.41 26.08 5.78 -107.50 -0.62 25.46 16 24 O -0.89 -13.66 15.25 -67.18 -1.02 -14.68 16 25 O -0.93 -12.15 17.13 -57.71 -0.99 -13.14 16 26 H 0.08 0.63 7.91 -51.93 -0.41 0.22 16 27 H 0.09 0.86 4.76 -51.93 -0.25 0.61 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 0.81 3.00 -51.93 -0.16 0.66 16 30 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 0.99 7.74 -51.93 -0.40 0.59 16 33 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 34 H 0.38 9.84 7.80 -40.82 -0.32 9.52 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 1.29 7.04 -51.93 -0.37 0.93 16 40 H 0.10 0.37 7.86 -51.93 -0.41 -0.03 16 41 H 0.11 0.66 5.28 -51.93 -0.27 0.38 16 42 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 353.02 15.07 5.32 5.32 Total: -1.00 -35.96 353.02 -10.03 -45.99 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.77 Total: 6.09 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -0.61 Total: -10.58 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.06 Total: -52.09 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -2.26 Total: -36.78 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 26.08 SS G_CDS: -0.62 Total: 25.46 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.96 -10.03 -45.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997094439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.127 kcal (2) G-P(sol) polarization free energy of solvation -35.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds