Wall clock time and date at job start Tue Mar 31 2020 05:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99873 * 2 1 4 4 H 1.48501 * 109.47106 * 240.00421 * 3 2 1 5 5 H 1.48501 * 109.47369 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47243 * 120.00195 * 3 2 1 7 7 C 1.38808 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99762 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00225 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99930 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.85382 * 23.80577 * 10 9 7 12 12 C 1.53785 * 113.61395 * 155.00164 * 10 9 7 13 13 C 1.53781 * 87.08264 * 89.19985 * 12 10 9 14 14 H 1.08997 * 113.61382 * 270.80079 * 13 12 10 15 15 N 1.46503 * 113.61585 * 139.97810 * 13 12 10 16 16 C 1.34773 * 119.99782 * 154.99635 * 15 13 12 17 17 O 1.21281 * 119.99980 * 0.02562 * 16 15 13 18 18 C 1.50696 * 119.99816 * 180.02562 * 16 15 13 19 19 C 1.53002 * 109.47128 * 180.02562 * 18 16 15 20 20 H 1.08996 * 109.38232 * 304.78982 * 19 18 16 21 21 C 1.52587 * 109.29831 * 64.53137 * 19 18 16 22 22 C 1.52590 * 110.63955 * 190.08947 * 21 19 18 23 23 C 1.53029 * 109.98916 * 290.01286 * 22 21 19 24 24 S 1.81672 * 109.00010 * 63.64821 * 23 22 21 25 25 O 1.42094 * 108.66366 * 191.37449 * 24 23 22 26 26 O 1.42104 * 108.66093 * 60.03414 * 24 23 22 27 27 C 1.53036 * 109.38374 * 185.00215 * 19 18 16 28 28 C 1.53781 * 113.69223 * 252.53525 * 10 9 7 29 29 H 0.97005 * 120.00148 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99608 * 0.02562 * 9 7 2 31 31 H 1.08995 * 113.60944 * 334.65057 * 12 10 9 32 32 H 1.09003 * 113.61661 * 203.74911 * 12 10 9 33 33 H 0.96995 * 119.99705 * 335.00938 * 15 13 12 34 34 H 1.09009 * 109.47180 * 60.00850 * 18 16 15 35 35 H 1.09001 * 109.47626 * 300.00508 * 18 16 15 36 36 H 1.08994 * 109.24061 * 310.38625 * 21 19 18 37 37 H 1.09001 * 109.24419 * 69.79179 * 21 19 18 38 38 H 1.09005 * 109.38446 * 50.17637 * 22 21 19 39 39 H 1.09006 * 109.38489 * 169.85615 * 22 21 19 40 40 H 1.09000 * 109.55215 * 183.50794 * 23 22 21 41 41 H 1.09003 * 109.54895 * 303.69498 * 23 22 21 42 42 H 1.08998 * 109.55557 * 296.15488 * 27 19 18 43 43 H 1.09006 * 109.55130 * 56.44684 * 27 19 18 44 44 H 1.08999 * 113.61551 * 156.32507 * 28 10 9 45 45 H 1.09004 * 113.61686 * 25.42509 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 1 3.0656 -3.5638 0.4049 12 6 1.2601 -4.8287 0.5949 13 6 0.7221 -5.0804 -0.8236 14 1 -0.1894 -4.5271 -1.0494 15 7 0.6268 -6.5003 -1.1717 16 6 -0.2512 -6.9066 -2.1100 17 8 -0.9620 -6.0967 -2.6665 18 6 -0.3496 -8.3671 -2.4677 19 6 -1.4132 -8.5563 -3.5512 20 1 -2.3566 -8.1299 -3.2104 21 6 -0.9670 -7.8453 -4.8255 22 6 -2.1040 -7.7995 -5.8421 23 6 -2.3736 -9.2031 -6.3890 24 16 -2.9407 -10.2682 -5.0308 25 8 -2.9353 -11.6169 -5.4780 26 8 -4.1338 -9.7181 -4.4893 27 6 -1.6002 -10.0505 -3.8241 28 6 2.0010 -4.4031 -1.3438 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 0.4928 -4.5187 1.3043 32 1 1.8870 -5.6360 0.9738 33 1 1.1955 -7.1479 -0.7268 34 1 -0.6262 -8.9402 -1.5827 35 1 0.6137 -8.7159 -2.8399 36 1 -0.6624 -6.8277 -4.5811 37 1 -0.1204 -8.3792 -5.2572 38 1 -3.0050 -7.4196 -5.3603 39 1 -1.8284 -7.1380 -6.6635 40 1 -3.1435 -9.1529 -7.1589 41 1 -1.4571 -9.6105 -6.8157 42 1 -0.6764 -10.4663 -4.2262 43 1 -1.8582 -10.5612 -2.8963 44 1 2.8304 -5.0940 -1.4950 45 1 1.8318 -3.7497 -2.1997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020889785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:27 Heat of formation + Delta-G solvation = -85.671878 kcal Electronic energy + Delta-G solvation = -26192.802601 eV Core-core repulsion = 22338.126675 eV Total energy + Delta-G solvation = -3854.675926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.21004 -38.57379 -37.51346 -36.90925 -36.34708 -34.07526 -33.32141 -32.62253 -29.87773 -28.76093 -27.70339 -25.15513 -24.47360 -23.28538 -22.52542 -21.16536 -20.28557 -19.23143 -18.75870 -17.43656 -17.31657 -16.99463 -16.49338 -15.99566 -15.94853 -15.60773 -15.32117 -14.91957 -14.49614 -14.10346 -14.00570 -13.69178 -13.36558 -13.28607 -13.05835 -12.83291 -12.63430 -12.42662 -12.33710 -12.12740 -12.02981 -11.93350 -11.67202 -11.58719 -11.44302 -11.16606 -11.00049 -10.88427 -10.82189 -10.43157 -10.30229 -10.20576 -9.91847 -9.74576 -9.54234 -8.94296 -8.74105 -7.03813 -5.81654 -3.12047 -0.33399 2.28817 2.65381 3.18953 3.31083 3.41488 3.45816 3.47259 3.60464 4.07412 4.12005 4.28010 4.37927 4.45950 4.53697 4.66052 4.84585 4.89904 5.00789 5.07474 5.09773 5.13548 5.20814 5.28976 5.35521 5.38859 5.44091 5.56267 5.68829 5.83763 5.90955 5.95442 6.01043 6.04100 6.19466 6.33568 6.57486 6.68665 6.73667 6.98908 7.60106 7.66244 8.29847 8.36468 9.47131 10.03195 10.37056 11.40377 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.025570 B = 0.002120 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.751103 B =13205.765746 C =13743.685823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.172 3.828 11 H 0.067 0.933 12 C -0.165 4.165 13 C 0.124 3.876 14 H 0.114 0.886 15 N -0.718 5.718 16 C 0.506 3.494 17 O -0.533 6.533 18 C -0.133 4.133 19 C -0.062 4.062 20 H 0.102 0.898 21 C -0.144 4.144 22 C -0.108 4.108 23 C -0.602 4.602 24 S 2.415 3.585 25 O -0.948 6.948 26 O -0.934 6.934 27 C -0.602 4.602 28 C -0.184 4.184 29 H 0.257 0.743 30 H 0.386 0.614 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.396 0.604 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.068 0.932 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.135 -24.005 -8.871 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.378 4.378 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.058 3.942 11 H 0.086 0.914 12 C -0.205 4.205 13 C 0.020 3.980 14 H 0.132 0.868 15 N -0.368 5.368 16 C 0.292 3.708 17 O -0.410 6.410 18 C -0.174 4.174 19 C -0.082 4.082 20 H 0.121 0.879 21 C -0.181 4.181 22 C -0.146 4.146 23 C -0.732 4.732 24 S 2.598 3.402 25 O -0.945 6.945 26 O -0.931 6.931 27 C -0.731 4.731 28 C -0.226 4.226 29 H 0.067 0.933 30 H 0.220 0.780 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.229 0.771 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.086 0.914 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.075 -23.754 -9.205 25.498 hybrid contribution 1.230 0.826 0.076 1.483 sum 0.154 -22.929 -9.129 24.680 Atomic orbital electron populations 1.69655 1.05155 1.26030 1.56891 1.24788 0.95541 0.97857 1.02530 0.86236 0.78514 0.83346 0.77862 1.21185 1.21642 1.21184 1.19214 0.91057 0.83903 1.43642 0.90998 1.42184 1.05761 0.99385 1.87021 1.20902 0.95238 0.85449 0.92579 0.91449 1.23900 1.00760 0.99959 0.95872 1.22655 0.99767 0.79590 0.95949 0.86816 1.46167 1.40061 1.09968 1.40587 1.20577 0.79963 0.90599 0.79670 1.90718 1.43037 1.55453 1.51793 1.21711 1.01083 0.94454 1.00179 1.20655 1.01378 0.89773 0.96352 0.87947 1.21938 0.97999 1.04736 0.93472 1.21246 1.00618 0.92883 0.99832 1.30244 1.12832 1.11896 1.18194 1.08049 0.77493 0.75898 0.78724 1.93592 1.87169 1.32863 1.80880 1.93610 1.41798 1.80086 1.77645 1.30362 1.19747 1.05062 1.17921 1.24309 0.96201 0.99730 1.02363 0.93272 0.77962 0.90883 0.90385 0.77062 0.88507 0.88572 0.87375 0.91324 0.89432 0.89419 0.84938 0.85040 0.84766 0.84628 0.91362 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.25 -6.74 9.97 -15.06 -0.15 -6.89 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.71 -17.28 5.31 -52.64 -0.28 -17.56 16 10 C 0.17 3.22 4.56 -67.12 -0.31 2.92 16 11 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 12 C -0.16 -2.46 7.58 -25.92 -0.20 -2.66 16 13 C 0.12 1.91 4.12 -67.11 -0.28 1.63 16 14 H 0.11 2.15 7.46 -51.93 -0.39 1.77 16 15 N -0.72 -8.13 5.35 -53.02 -0.28 -8.42 16 16 C 0.51 5.99 7.44 -10.99 -0.08 5.91 16 17 O -0.53 -8.61 13.59 5.56 0.08 -8.53 16 18 C -0.13 -0.94 5.17 -27.88 -0.14 -1.09 16 19 C -0.06 -0.47 1.68 -90.81 -0.15 -0.62 16 20 H 0.10 0.96 7.83 -51.93 -0.41 0.55 16 21 C -0.14 -1.11 4.72 -27.15 -0.13 -1.24 16 22 C -0.11 -0.77 5.73 -26.93 -0.15 -0.93 16 23 C -0.60 -3.28 6.35 37.17 0.24 -3.05 16 24 S 2.42 18.16 5.31 -107.50 -0.57 17.59 16 25 O -0.95 -10.12 18.10 -57.81 -1.05 -11.17 16 26 O -0.93 -10.83 17.94 -57.81 -1.04 -11.87 16 27 C -0.60 -3.08 5.62 37.18 0.21 -2.88 16 28 C -0.18 -3.04 7.68 -25.92 -0.20 -3.23 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.39 10.16 7.90 -40.82 -0.32 9.83 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.08 0.92 8.12 -51.93 -0.42 0.50 16 33 H 0.40 3.13 8.73 -40.82 -0.36 2.77 16 34 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.11 1.15 5.74 -51.93 -0.30 0.85 16 37 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 38 H 0.09 0.72 8.01 -51.93 -0.42 0.30 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.13 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.13 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.14 0.52 8.14 -51.92 -0.42 0.09 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 373.21 15.07 5.62 5.62 Total: -1.00 -37.36 373.21 -10.48 -47.84 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -7.22 Total: 9.14 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -1.44 Total: -12.53 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.16 Total: -53.19 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -2.01 Total: -31.56 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 18.16 SS G_CDS: -0.57 Total: 17.59 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.36 -10.48 -47.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020889785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.830 kcal (2) G-P(sol) polarization free energy of solvation -37.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds