Wall clock time and date at job start Tue Mar 31 2020 05:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99390 * 2 1 4 4 H 1.48499 * 109.46948 * 269.99896 * 3 2 1 5 5 H 1.48503 * 109.47427 * 30.00140 * 3 2 1 6 6 H 1.48498 * 109.46726 * 149.99991 * 3 2 1 7 7 C 1.38805 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00025 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99703 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99581 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.85421 * 336.18852 * 10 9 7 12 12 C 1.54048 * 113.69552 * 107.46727 * 10 9 7 13 13 C 1.53779 * 86.98828 * 139.98628 * 12 10 9 14 14 H 1.09003 * 113.61247 * 219.98018 * 13 12 10 15 15 N 1.46499 * 113.61441 * 89.16190 * 13 12 10 16 16 C 1.34777 * 120.00199 * 105.86649 * 15 13 12 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 13 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 13 19 19 C 1.52996 * 109.47159 * 179.72352 * 18 16 15 20 20 H 1.09002 * 109.38585 * 54.99842 * 19 18 16 21 21 C 1.52592 * 109.38269 * 295.20981 * 19 18 16 22 22 C 1.52634 * 110.61779 * 169.74845 * 21 19 18 23 23 C 1.53043 * 109.89385 * 70.14068 * 22 21 19 24 24 S 1.81665 * 108.99688 * 296.30687 * 23 22 21 25 25 O 1.42093 * 108.66744 * 299.97029 * 24 23 22 26 26 O 1.42107 * 108.66147 * 168.63182 * 24 23 22 27 27 C 1.53036 * 109.38617 * 174.79020 * 19 18 16 28 28 C 1.53776 * 87.17037 * 334.56783 * 13 12 10 29 29 H 0.96994 * 120.00971 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00059 * 359.97438 * 9 7 2 31 31 H 1.08999 * 113.61805 * 25.47657 * 12 10 9 32 32 H 1.09006 * 113.69638 * 254.50462 * 12 10 9 33 33 H 0.97000 * 119.99484 * 285.85746 * 15 13 12 34 34 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 35 35 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 36 36 H 1.08994 * 109.24264 * 290.15293 * 21 19 18 37 37 H 1.08996 * 109.24643 * 49.55730 * 21 19 18 38 38 H 1.08994 * 109.46472 * 309.98961 * 22 21 19 39 39 H 1.09000 * 109.30770 * 190.19300 * 22 21 19 40 40 H 1.08999 * 109.54685 * 176.45362 * 23 22 21 41 41 H 1.08997 * 109.62782 * 56.21311 * 23 22 21 42 42 H 1.09001 * 109.54316 * 303.65829 * 27 19 18 43 43 H 1.08990 * 109.54976 * 63.94608 * 27 19 18 44 44 H 1.09000 * 113.61605 * 140.02646 * 28 13 12 45 45 H 1.09007 * 113.61686 * 270.92669 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4474 2.6528 0.7001 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2019 0.0000 10 6 4.1122 -2.4707 0.0000 11 1 3.5279 -3.2969 0.4051 12 6 4.7889 -2.7948 -1.3454 13 6 5.9845 -3.3107 -0.5272 14 1 6.9521 -3.0454 -0.9532 15 7 5.8870 -4.7298 -0.1766 16 6 6.6554 -5.6356 -0.8135 17 8 7.4271 -5.2760 -1.6772 18 6 6.5506 -7.0961 -0.4570 19 6 7.5176 -7.9036 -1.3253 20 1 8.5243 -7.5000 -1.2169 21 6 7.0878 -7.8070 -2.7862 22 6 8.1634 -8.3846 -3.7022 23 6 8.2283 -9.9045 -3.5354 24 16 8.7381 -10.2916 -1.8352 25 8 10.0182 -9.7203 -1.6031 26 8 8.5430 -11.6806 -1.6071 27 6 7.5052 -9.3659 -0.8742 28 6 5.5260 -2.3657 0.5959 29 1 -0.4851 0.8399 0.0004 30 1 3.8646 -0.3619 0.0004 31 1 5.0171 -1.9124 -1.9432 32 1 4.2811 -3.5733 -1.9149 33 1 5.2696 -5.0173 0.5141 34 1 6.8053 -7.2328 0.5940 35 1 5.5314 -7.4405 -0.6317 36 1 6.1597 -8.3614 -2.9250 37 1 6.9225 -6.7609 -3.0437 38 1 9.1299 -7.9509 -3.4459 39 1 7.9221 -8.1443 -4.7376 40 1 8.9533 -10.3178 -4.2366 41 1 7.2464 -10.3364 -3.7291 42 1 7.7517 -9.4225 0.1861 43 1 6.5162 -9.7914 -1.0434 44 1 5.6128 -2.7978 1.5928 45 1 5.9553 -1.3660 0.5280 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020889786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:32 Heat of formation + Delta-G solvation = -82.126469 kcal Electronic energy + Delta-G solvation = -26121.012643 eV Core-core repulsion = 22266.490457 eV Total energy + Delta-G solvation = -3854.522186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.39539 -38.71811 -37.57768 -36.97583 -36.39860 -34.21756 -33.40575 -32.61466 -30.58221 -28.85607 -27.76533 -25.31824 -24.72645 -23.21708 -22.05371 -21.42278 -20.41611 -19.26653 -19.25330 -17.64490 -17.47672 -17.05835 -16.61130 -16.03666 -15.94827 -15.65427 -15.38661 -15.05969 -14.61976 -14.33963 -14.14898 -13.77798 -13.49894 -13.36360 -13.11590 -12.85276 -12.68481 -12.48822 -12.38897 -12.25345 -12.21644 -12.07960 -12.00731 -11.66034 -11.52667 -11.24637 -11.08673 -11.02769 -10.94307 -10.49485 -10.47209 -10.26774 -9.97822 -9.81385 -9.64256 -9.02185 -8.90428 -7.35436 -5.85810 -3.22076 -0.38562 2.23591 2.50838 3.02963 3.25002 3.31380 3.34373 3.39958 3.53556 4.00142 4.06067 4.21553 4.31342 4.40012 4.51182 4.60085 4.73593 4.82306 4.87417 4.97419 5.04165 5.05792 5.08615 5.19357 5.21981 5.32437 5.34441 5.49096 5.59384 5.62889 5.68545 5.83309 5.85890 5.96463 6.04612 6.10965 6.35440 6.43832 6.49743 6.87607 7.45159 7.89203 8.14114 8.33617 9.10925 9.83629 10.02920 11.32208 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.034461 B = 0.001998 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.308529 B =14013.469949 C =14097.896446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.090 0.910 9 N -0.736 5.736 10 C 0.173 3.827 11 H 0.081 0.919 12 C -0.176 4.176 13 C 0.116 3.884 14 H 0.096 0.904 15 N -0.707 5.707 16 C 0.513 3.487 17 O -0.539 6.539 18 C -0.134 4.134 19 C -0.061 4.061 20 H 0.101 0.899 21 C -0.145 4.145 22 C -0.106 4.106 23 C -0.603 4.603 24 S 2.416 3.584 25 O -0.936 6.936 26 O -0.947 6.947 27 C -0.603 4.603 28 C -0.163 4.163 29 H 0.260 0.740 30 H 0.363 0.637 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.402 0.598 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.067 0.933 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.590 -20.405 -3.242 26.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.381 4.381 8 H 0.108 0.892 9 N -0.376 5.376 10 C 0.061 3.939 11 H 0.099 0.901 12 C -0.218 4.218 13 C 0.011 3.989 14 H 0.114 0.886 15 N -0.358 5.358 16 C 0.299 3.701 17 O -0.416 6.416 18 C -0.175 4.175 19 C -0.080 4.080 20 H 0.120 0.880 21 C -0.182 4.182 22 C -0.145 4.145 23 C -0.733 4.733 24 S 2.599 3.401 25 O -0.933 6.933 26 O -0.944 6.944 27 C -0.732 4.732 28 C -0.203 4.203 29 H 0.070 0.930 30 H 0.196 0.804 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.236 0.764 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.125 0.875 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.086 0.914 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 17.565 -20.732 -3.544 27.402 hybrid contribution -0.606 1.476 0.090 1.598 sum 16.959 -19.256 -3.455 25.891 Atomic orbital electron populations 1.69697 1.05147 1.25988 1.57046 1.24707 0.95275 0.97348 1.01731 0.86543 0.79192 0.84871 0.77861 1.20986 1.21658 1.20284 1.19108 0.80638 0.94749 1.43572 0.89191 1.42750 1.04125 1.01983 1.88738 1.21653 0.89404 0.90025 0.92811 0.90064 1.24309 0.96642 1.00803 1.00028 1.21792 0.99857 0.79397 0.97888 0.88556 1.45748 1.42263 1.07145 1.40596 1.20552 0.80058 0.87940 0.81563 1.90680 1.38066 1.81255 1.31644 1.21711 1.02095 0.91878 1.01820 1.20646 1.02073 0.90052 0.95269 0.88031 1.21951 0.98336 1.05357 0.92570 1.21249 1.01242 0.89375 1.02598 1.30249 1.12799 1.06433 1.23775 1.08036 0.77181 0.75643 0.79255 1.93601 1.36028 1.79640 1.84012 1.93600 1.86915 1.29457 1.84403 1.30371 1.18713 1.09038 1.15063 1.23875 0.99401 0.99381 0.97608 0.92954 0.80371 0.89721 0.92012 0.76390 0.88294 0.88193 0.91120 0.87532 0.89528 0.89467 0.84949 0.84954 0.84562 0.84618 0.91415 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.55 13.97 55.49 0.78 -27.78 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.89 21.48 27.74 -169.99 -4.71 16.77 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 7 C -0.25 -6.80 10.45 -15.06 -0.16 -6.95 16 8 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 9 N -0.74 -16.45 5.21 -52.50 -0.27 -16.73 16 10 C 0.17 2.97 4.37 -66.97 -0.29 2.68 16 11 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 12 C -0.18 -2.73 7.70 -25.78 -0.20 -2.93 16 13 C 0.12 1.50 4.29 -67.12 -0.29 1.21 16 14 H 0.10 1.32 7.50 -51.93 -0.39 0.93 16 15 N -0.71 -7.32 5.26 -53.02 -0.28 -7.60 16 16 C 0.51 5.30 7.45 -10.98 -0.08 5.22 16 17 O -0.54 -7.36 13.63 5.55 0.08 -7.28 16 18 C -0.13 -0.85 5.17 -27.88 -0.14 -0.99 16 19 C -0.06 -0.40 1.67 -90.81 -0.15 -0.55 16 20 H 0.10 0.80 7.82 -51.93 -0.41 0.40 16 21 C -0.15 -0.96 4.72 -27.13 -0.13 -1.09 16 22 C -0.11 -0.64 5.74 -26.90 -0.15 -0.79 16 23 C -0.60 -2.81 6.34 37.18 0.24 -2.57 16 24 S 2.42 16.41 5.31 -107.50 -0.57 15.84 16 25 O -0.94 -9.93 17.94 -57.81 -1.04 -10.97 16 26 O -0.95 -9.66 18.10 -57.81 -1.05 -10.70 16 27 C -0.60 -2.72 5.62 37.18 0.21 -2.51 16 28 C -0.16 -2.23 7.57 -25.92 -0.20 -2.42 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.36 8.01 5.78 -40.82 -0.24 7.77 16 31 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.40 3.29 8.70 -40.82 -0.36 2.93 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 37 H 0.11 0.97 5.78 -51.93 -0.30 0.67 16 38 H 0.09 0.58 8.01 -51.93 -0.42 0.17 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.14 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 1.24 8.12 -51.93 -0.42 0.82 16 LS Contribution 370.17 15.07 5.58 5.58 Total: -1.00 -37.61 370.17 -10.12 -47.73 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -7.18 Total: 6.78 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -1.44 Total: -11.64 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.22 Total: -52.10 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -2.01 Total: -28.96 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.77 kcal Atomic # 16 Polarization: 16.41 SS G_CDS: -0.57 Total: 15.84 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.61 -10.12 -47.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020889786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.396 kcal (2) G-P(sol) polarization free energy of solvation -37.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds