Wall clock time and date at job start Tue Mar 31 2020 05:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99789 * 2 1 4 4 H 1.48502 * 109.46783 * 269.99410 * 3 2 1 5 5 H 1.48491 * 109.47414 * 29.99198 * 3 2 1 6 6 H 1.48500 * 109.47047 * 149.99822 * 3 2 1 7 7 C 1.38807 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00064 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00235 * 0.02562 * 7 2 1 10 10 C 1.46492 * 120.00438 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.84993 * 26.37843 * 10 9 7 12 12 C 1.53780 * 113.61785 * 157.58016 * 10 9 7 13 13 C 1.53776 * 87.08349 * 89.11638 * 12 10 9 14 14 H 1.08996 * 113.61251 * 140.07084 * 13 12 10 15 15 N 1.46503 * 113.61314 * 270.88258 * 13 12 10 16 16 C 1.34775 * 120.00322 * 275.07321 * 15 13 12 17 17 O 1.21274 * 119.99894 * 0.02562 * 16 15 13 18 18 C 1.50703 * 119.99776 * 179.97438 * 16 15 13 19 19 C 1.53004 * 109.46860 * 179.97438 * 18 16 15 20 20 H 1.09004 * 109.29540 * 304.73921 * 19 18 16 21 21 C 1.52582 * 109.38549 * 64.47607 * 19 18 16 22 22 C 1.52585 * 110.64425 * 190.14027 * 21 19 18 23 23 C 1.53032 * 109.98770 * 290.01820 * 22 21 19 24 24 S 1.81662 * 108.99948 * 63.64807 * 23 22 21 25 25 O 1.42107 * 108.66242 * 191.37375 * 24 23 22 26 26 O 1.42091 * 108.66580 * 60.02884 * 24 23 22 27 27 C 1.53036 * 109.38372 * 185.00259 * 19 18 16 28 28 C 1.53780 * 87.08019 * 25.43434 * 13 12 10 29 29 H 0.97002 * 119.99767 * 0.02562 * 1 2 3 30 30 H 0.97008 * 119.99495 * 359.97438 * 9 7 2 31 31 H 1.09006 * 113.61415 * 334.56309 * 12 10 9 32 32 H 1.09006 * 113.69088 * 203.68036 * 12 10 9 33 33 H 0.97007 * 119.99727 * 95.07247 * 15 13 12 34 34 H 1.09008 * 109.46917 * 60.00302 * 18 16 15 35 35 H 1.08991 * 109.47480 * 300.00190 * 18 16 15 36 36 H 1.08998 * 109.24424 * 310.44907 * 21 19 18 37 37 H 1.09007 * 109.24034 * 69.84255 * 21 19 18 38 38 H 1.09004 * 109.38350 * 50.17721 * 22 21 19 39 39 H 1.09000 * 109.38134 * 169.96255 * 22 21 19 40 40 H 1.09000 * 109.54890 * 303.79031 * 23 22 21 41 41 H 1.09002 * 109.54774 * 183.50274 * 23 22 21 42 42 H 1.09000 * 109.54899 * 56.34108 * 27 19 18 43 43 H 1.08997 * 109.54719 * 296.05205 * 27 19 18 44 44 H 1.09000 * 113.61114 * 89.11984 * 28 13 12 45 45 H 1.08997 * 113.61159 * 220.01903 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6998 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 3.0490 -3.5733 0.4468 12 6 1.2381 -4.8415 0.5379 13 6 0.7542 -5.0596 -0.9053 14 1 0.6916 -6.1097 -1.1908 15 7 -0.4575 -4.3064 -1.2381 16 6 -1.6699 -4.8150 -0.9416 17 8 -1.7578 -5.8959 -0.3989 18 6 -2.9163 -4.0398 -1.2835 19 6 -4.1477 -4.8347 -0.8444 20 1 -4.1168 -5.8259 -1.2969 21 6 -4.1467 -4.9715 0.6753 22 6 -5.2149 -5.9632 1.1268 23 6 -6.6076 -5.3694 0.9038 24 16 -6.8632 -5.1133 -0.8765 25 8 -8.0326 -4.3270 -1.0595 26 8 -6.7560 -6.3671 -1.5363 27 6 -5.4128 -4.1060 -1.3032 28 6 2.0518 -4.3717 -1.3610 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 0.4445 -4.5474 1.2249 32 1 1.8490 -5.6586 0.9219 33 1 -0.3872 -3.4416 -1.6719 34 1 -2.9567 -3.8732 -2.3600 35 1 -2.9001 -3.0798 -0.7677 36 1 -3.1686 -5.3227 1.0038 37 1 -4.3474 -3.9984 1.1237 38 1 -5.1184 -6.8850 0.5531 39 1 -5.0815 -6.1809 2.1865 40 1 -6.6848 -4.4149 1.4244 41 1 -7.3625 -6.0569 1.2854 42 1 -5.3769 -3.9571 -2.3824 43 1 -5.4792 -3.1402 -0.8023 44 1 2.8863 -5.0597 -1.4967 45 1 1.9151 -3.6983 -2.2071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022941187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:38 Heat of formation + Delta-G solvation = -84.363082 kcal Electronic energy + Delta-G solvation = -27071.396100 eV Core-core repulsion = 23216.776928 eV Total energy + Delta-G solvation = -3854.619173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.11977 -38.52588 -37.32368 -36.69116 -36.18544 -33.71683 -33.13921 -32.53332 -29.99821 -28.54135 -27.49618 -25.22443 -24.51484 -23.27103 -22.35541 -20.92639 -19.92396 -19.03427 -18.76681 -17.50460 -17.06880 -16.79951 -16.27559 -15.80946 -15.70409 -15.29718 -15.10969 -14.79357 -14.77936 -14.06434 -13.88151 -13.62864 -13.28533 -13.09835 -13.07690 -12.87129 -12.40890 -12.23896 -12.17654 -12.02761 -11.81363 -11.71950 -11.51975 -11.39922 -11.24631 -10.98198 -10.93695 -10.86720 -10.76591 -10.38766 -10.26128 -10.23690 -9.89155 -9.63033 -9.41159 -9.04795 -8.55567 -7.13326 -5.94062 -3.22533 -0.15236 2.46420 2.89568 3.33635 3.39658 3.40830 3.41502 3.48362 3.79212 4.29170 4.33918 4.45711 4.48173 4.57237 4.72151 4.88041 5.00400 5.11036 5.15496 5.19992 5.32283 5.35786 5.37494 5.43002 5.46132 5.51013 5.69742 5.77255 5.82253 5.84737 5.88454 6.10434 6.14492 6.20049 6.30348 6.34950 6.57280 6.61284 6.77607 7.04764 7.59047 7.87425 8.26201 8.53117 9.37607 9.93327 10.28785 11.28522 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.003078 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.836274 B = 9095.023786 C =10316.299684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.164 3.836 11 H 0.063 0.937 12 C -0.166 4.166 13 C 0.128 3.872 14 H 0.079 0.921 15 N -0.702 5.702 16 C 0.516 3.484 17 O -0.548 6.548 18 C -0.136 4.136 19 C -0.058 4.058 20 H 0.098 0.902 21 C -0.145 4.145 22 C -0.105 4.105 23 C -0.603 4.603 24 S 2.416 3.584 25 O -0.949 6.949 26 O -0.938 6.938 27 C -0.601 4.601 28 C -0.180 4.180 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.410 0.590 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.082 0.918 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.121 -10.429 -0.799 13.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.346 5.346 10 C 0.052 3.948 11 H 0.081 0.919 12 C -0.206 4.206 13 C 0.022 3.978 14 H 0.097 0.903 15 N -0.353 5.353 16 C 0.302 3.698 17 O -0.427 6.427 18 C -0.177 4.177 19 C -0.077 4.077 20 H 0.117 0.883 21 C -0.182 4.182 22 C -0.143 4.143 23 C -0.733 4.733 24 S 2.600 3.400 25 O -0.946 6.946 26 O -0.936 6.936 27 C -0.730 4.730 28 C -0.221 4.221 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.247 0.753 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.100 0.900 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.781 -11.309 -0.945 14.982 hybrid contribution 0.749 1.854 0.255 2.016 sum -9.032 -9.455 -0.690 13.094 Atomic orbital electron populations 1.69629 1.05119 1.25879 1.57560 1.24726 0.95564 0.97741 1.02608 0.86164 0.78716 0.83580 0.77550 1.21656 1.21749 1.20721 1.19305 0.91223 0.83910 1.43006 0.90953 1.42252 1.05742 0.99414 1.87204 1.21178 0.95213 0.85866 0.92535 0.91929 1.23822 1.00684 0.99707 0.96435 1.21701 0.84364 0.94916 0.96783 0.90303 1.45870 1.04834 1.23391 1.61245 1.20506 0.84865 0.86147 0.78255 1.90630 1.87180 1.21941 1.42921 1.21715 0.91626 1.00570 1.03789 1.20607 0.90773 0.99516 0.96819 0.88338 1.21942 1.02200 0.99961 0.94143 1.21234 0.89287 0.99382 1.04418 1.30243 1.06859 1.10993 1.25160 1.07993 0.76876 0.76390 0.78769 1.93591 1.44519 1.71389 1.85080 1.93585 1.86874 1.41004 1.72094 1.30358 1.16088 1.14663 1.11931 1.24140 0.95403 1.00197 1.02390 0.93408 0.78002 0.91384 0.89876 0.75304 0.88571 0.87547 0.87451 0.91015 0.89695 0.89640 0.84921 0.85130 0.84610 0.84465 0.89963 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.68 13.06 55.49 0.72 -24.95 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.24 -6.26 9.97 -15.06 -0.15 -6.41 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 9 N -0.71 -16.07 5.02 -52.65 -0.26 -16.34 16 10 C 0.16 3.03 4.55 -67.12 -0.31 2.72 16 11 H 0.06 1.16 8.11 -51.93 -0.42 0.74 16 12 C -0.17 -2.71 7.62 -25.92 -0.20 -2.91 16 13 C 0.13 1.97 4.00 -67.12 -0.27 1.70 16 14 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 15 N -0.70 -10.73 4.33 -53.02 -0.23 -10.96 16 16 C 0.52 7.59 7.45 -10.98 -0.08 7.51 16 17 O -0.55 -9.19 13.93 5.56 0.08 -9.11 16 18 C -0.14 -1.56 5.17 -27.88 -0.14 -1.71 16 19 C -0.06 -0.59 1.67 -90.81 -0.15 -0.74 16 20 H 0.10 1.09 7.83 -51.93 -0.41 0.68 16 21 C -0.15 -1.48 4.72 -27.16 -0.13 -1.61 16 22 C -0.10 -0.91 5.73 -26.93 -0.15 -1.06 16 23 C -0.60 -4.35 6.35 37.17 0.24 -4.12 16 24 S 2.42 22.67 5.31 -107.50 -0.57 22.10 16 25 O -0.95 -12.01 18.10 -57.81 -1.05 -13.05 16 26 O -0.94 -12.02 17.94 -57.81 -1.04 -13.06 16 27 C -0.60 -4.88 5.62 37.18 0.21 -4.67 16 28 C -0.18 -2.79 7.57 -25.92 -0.20 -2.98 16 29 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.39 9.04 6.36 -40.82 -0.26 8.78 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.41 6.50 7.83 -40.82 -0.32 6.18 16 34 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.11 1.36 5.74 -51.93 -0.30 1.07 16 37 H 0.07 0.64 8.09 -51.92 -0.42 0.22 16 38 H 0.08 0.77 8.01 -51.93 -0.42 0.35 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.14 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.14 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 LS Contribution 370.21 15.07 5.58 5.58 Total: -1.00 -33.87 370.21 -10.38 -44.25 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -7.16 Total: 14.13 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -1.43 Total: -14.66 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.23 Total: -52.25 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -2.01 Total: -35.23 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 22.67 SS G_CDS: -0.57 Total: 22.10 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.87 -10.38 -44.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022941187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.116 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds