Wall clock time and date at job start Tue Mar 31 2020 04:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99952 * 2 1 4 4 H 1.48494 * 109.47171 * 239.71979 * 3 2 1 5 5 H 1.48499 * 109.47171 * 359.72333 * 3 2 1 6 6 H 1.48510 * 109.47083 * 119.71990 * 3 2 1 7 7 C 1.38810 * 119.99730 * 179.71972 * 2 1 3 8 8 H 1.08007 * 119.99706 * 186.62088 * 7 2 1 9 9 N 1.36933 * 119.99904 * 6.62211 * 7 2 1 10 10 C 1.46924 * 120.63306 * 41.83081 * 9 7 2 11 11 C 1.53630 * 108.54115 * 126.36788 * 10 9 7 12 12 C 1.53036 * 109.24184 * 54.85818 * 11 10 9 13 13 C 1.53038 * 109.53722 * 298.51012 * 12 11 10 14 14 C 1.46929 * 120.62891 * 222.11058 * 9 7 2 15 15 H 1.09007 * 109.58535 * 113.65972 * 14 9 7 16 16 C 1.53004 * 109.58747 * 353.37293 * 14 9 7 17 17 N 1.46504 * 109.46712 * 57.38348 * 16 14 9 18 18 C 1.34778 * 119.99611 * 179.97438 * 17 16 14 19 19 O 1.21276 * 120.00042 * 0.02562 * 18 17 16 20 20 C 1.50701 * 119.99990 * 179.97438 * 18 17 16 21 21 H 1.09000 * 109.64178 * 300.70278 * 20 18 17 22 22 C 1.53869 * 109.64718 * 180.27170 * 20 18 17 23 23 C 1.55048 * 106.62360 * 192.96313 * 22 20 18 24 24 S 1.83288 * 102.56462 * 42.43855 * 23 22 20 25 25 O 1.42100 * 109.35656 * 90.18164 * 24 23 22 26 26 O 1.42101 * 109.35355 * 223.25494 * 24 23 22 27 27 C 1.54165 * 109.64432 * 61.12808 * 20 18 17 28 28 H 0.96999 * 120.00353 * 186.22905 * 1 2 3 29 29 H 1.08994 * 109.58875 * 246.20122 * 10 9 7 30 30 H 1.08996 * 109.58400 * 6.62953 * 10 9 7 31 31 H 1.09001 * 109.63402 * 294.86355 * 11 10 9 32 32 H 1.09005 * 109.45640 * 174.74516 * 11 10 9 33 33 H 1.09004 * 109.45964 * 178.49053 * 12 11 10 34 34 H 1.08998 * 109.46203 * 58.53233 * 12 11 10 35 35 H 1.08997 * 109.49924 * 301.40836 * 13 12 11 36 36 H 1.09005 * 109.52454 * 181.33689 * 13 12 11 37 37 H 1.08996 * 109.47074 * 177.38104 * 16 14 9 38 38 H 1.08995 * 109.47078 * 297.38247 * 16 14 9 39 39 H 0.97003 * 120.00183 * 359.97438 * 17 16 14 40 40 H 1.08998 * 110.02820 * 312.25563 * 22 20 18 41 41 H 1.09006 * 110.02830 * 73.67446 * 22 20 18 42 42 H 1.09002 * 110.79148 * 160.69902 * 23 22 20 43 43 H 1.08988 * 110.79682 * 284.16658 * 23 22 20 44 44 H 1.09000 * 110.31982 * 266.66438 * 27 20 18 45 45 H 1.09001 * 110.31857 * 28.86202 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1091 1.6935 -1.2090 5 1 1.2852 2.7464 -0.0068 6 1 3.0989 1.6994 1.2160 7 6 2.0102 -1.2021 0.0059 8 1 3.0849 -1.2047 0.1137 9 7 1.3323 -2.3847 -0.1251 10 6 0.2329 -2.5143 -1.0911 11 6 0.5156 -3.7252 -1.9933 12 6 0.7349 -4.9636 -1.1213 13 6 1.9493 -4.7438 -0.2164 14 6 1.6866 -3.5462 0.7021 15 1 0.8646 -3.7763 1.3800 16 6 2.9471 -3.2343 1.5113 17 7 2.7189 -2.0408 2.3298 18 6 3.6980 -1.5759 3.1309 19 8 4.7679 -2.1453 3.1739 20 6 3.4636 -0.3479 3.9724 21 1 3.2173 0.4962 3.3282 22 6 4.7311 -0.0269 4.7836 23 6 4.3208 1.0187 5.8524 24 16 2.7092 0.3749 6.4419 25 8 2.9252 -0.5029 7.5383 26 8 1.7896 1.4510 6.5674 27 6 2.3036 -0.6062 4.9544 28 1 -0.4850 -0.8350 0.0911 29 1 -0.7061 -2.6636 -0.5581 30 1 0.1714 -1.6111 -1.6980 31 1 1.4085 -3.5373 -2.5895 32 1 -0.3349 -3.8918 -2.6545 33 1 0.9092 -5.8304 -1.7589 34 1 -0.1490 -5.1366 -0.5073 35 1 2.8287 -4.5463 -0.8292 36 1 2.1196 -5.6350 0.3877 37 1 3.1816 -4.0793 2.1586 38 1 3.7801 -3.0550 0.8317 39 1 1.8633 -1.5852 2.2951 40 1 5.1028 -0.9298 5.2681 41 1 5.4976 0.3889 4.1296 42 1 5.0467 1.0467 6.6650 43 1 4.2027 2.0048 5.4036 44 1 1.3612 -0.2667 4.5247 45 1 2.2472 -1.6659 5.2032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024537052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:51 Heat of formation + Delta-G solvation = -96.082961 kcal Electronic energy + Delta-G solvation = -28054.649943 eV Core-core repulsion = 24199.522558 eV Total energy + Delta-G solvation = -3855.127385 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.72509 -38.10395 -37.10036 -36.14966 -35.68192 -34.30998 -33.46569 -31.19494 -29.95149 -29.79421 -26.46223 -25.61780 -24.70365 -22.31506 -22.06327 -20.93339 -19.73015 -19.18116 -18.92045 -17.68233 -17.05117 -16.83763 -16.05797 -15.75131 -15.49033 -15.24627 -14.69317 -14.29980 -14.17020 -13.86671 -13.74309 -13.63072 -13.47522 -13.29088 -12.59131 -12.46981 -12.34359 -12.24560 -12.12026 -12.08022 -12.03380 -11.75411 -11.48292 -11.33940 -11.19693 -10.96620 -10.77747 -10.50700 -10.45003 -10.33483 -10.19548 -10.08460 -9.84889 -9.42747 -9.18848 -8.70669 -8.30634 -6.96042 -6.08891 -3.61198 -0.05384 2.39089 2.96477 3.25364 3.35448 3.50305 3.52526 3.58181 3.97825 4.32158 4.36548 4.45118 4.57998 4.73690 4.85776 5.00758 5.21416 5.23222 5.35667 5.38735 5.44301 5.48430 5.50713 5.58283 5.77512 5.83812 5.88231 5.94002 5.98057 6.13504 6.18398 6.22386 6.41099 6.45377 6.52082 6.61344 6.77202 6.98046 7.03533 7.10075 7.97655 8.13220 8.44405 8.71712 8.91426 9.62735 10.13917 11.05764 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014281 B = 0.004322 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.200065 B = 6477.655948 C = 7327.073371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.017 4.017 3 Si 1.059 2.941 4 H -0.291 1.291 5 H -0.282 1.282 6 H -0.290 1.290 7 C -0.341 4.341 8 H 0.054 0.946 9 N -0.597 5.597 10 C 0.152 3.848 11 C -0.139 4.139 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.031 0.969 16 C 0.138 3.862 17 N -0.682 5.682 18 C 0.518 3.482 19 O -0.561 6.561 20 C -0.107 4.107 21 H 0.122 0.878 22 C -0.099 4.099 23 C -0.587 4.587 24 S 2.391 3.609 25 O -0.939 6.939 26 O -0.937 6.937 27 C -0.588 4.588 28 H 0.274 0.726 29 H 0.019 0.981 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.417 0.583 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.150 0.850 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.640 -2.358 6.314 8.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.889 3.111 4 H -0.218 1.218 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.471 4.471 8 H 0.072 0.928 9 N -0.322 5.322 10 C 0.027 3.973 11 C -0.179 4.179 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.054 3.946 15 H 0.048 0.952 16 C 0.014 3.986 17 N -0.332 5.332 18 C 0.302 3.698 19 O -0.441 6.441 20 C -0.129 4.129 21 H 0.140 0.860 22 C -0.138 4.138 23 C -0.717 4.717 24 S 2.575 3.425 25 O -0.936 6.936 26 O -0.934 6.934 27 C -0.718 4.718 28 H 0.086 0.914 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.255 0.745 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.168 0.832 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.674 -0.949 7.114 8.565 hybrid contribution 0.144 -1.576 -0.985 1.864 sum 4.818 -2.525 6.129 8.194 Atomic orbital electron populations 1.70797 1.06324 1.31288 1.47484 1.26056 0.96977 1.01349 0.97734 0.83589 0.74739 0.76217 0.76542 1.21822 1.20742 1.21708 1.19880 0.91328 0.84493 1.51440 0.92850 1.44097 1.39559 1.08878 1.39697 1.21093 0.89938 0.95729 0.90580 1.22164 1.00427 0.96974 0.98307 1.21352 0.97887 0.97395 0.97866 1.21929 0.98453 0.97827 0.98483 1.20777 0.93841 0.88781 0.91230 0.95156 1.21230 0.98434 0.86206 0.92759 1.46026 1.17277 1.29256 1.40637 1.19876 0.84448 0.84955 0.80481 1.90650 1.25487 1.59898 1.68114 1.21758 0.93472 1.00328 0.97381 0.86011 1.22031 0.97559 0.98064 0.96168 1.30636 1.21617 1.09476 1.09963 1.09019 0.78779 0.77015 0.77736 1.93611 1.85625 1.65728 1.48641 1.93622 1.60657 1.53077 1.86093 1.30560 1.07383 1.16004 1.17826 0.91395 0.96281 0.90937 0.92536 0.93375 0.93419 0.92845 0.92053 0.92899 0.92660 0.91682 0.74455 0.88407 0.87884 0.84277 0.84245 0.83218 0.84077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.26 12.76 55.49 0.71 -23.55 16 2 C -0.02 -0.43 5.10 -17.43 -0.09 -0.51 16 3 Si 1.06 22.60 29.92 -169.99 -5.09 17.51 16 4 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.29 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.34 -8.01 6.23 -15.06 -0.09 -8.10 16 8 H 0.05 1.32 6.47 -52.48 -0.34 0.98 16 9 N -0.60 -12.76 2.76 -164.51 -0.45 -13.21 16 10 C 0.15 3.18 4.55 -3.48 -0.02 3.16 16 11 C -0.14 -2.42 6.10 -26.39 -0.16 -2.58 16 12 C -0.11 -1.65 5.88 -26.69 -0.16 -1.81 16 13 C -0.13 -2.03 5.37 -26.61 -0.14 -2.17 16 14 C 0.16 2.92 3.05 -67.60 -0.21 2.71 16 15 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 16 C 0.14 2.47 4.48 -4.04 -0.02 2.45 16 17 N -0.68 -12.13 3.84 -60.29 -0.23 -12.36 16 18 C 0.52 8.79 7.00 -10.98 -0.08 8.71 16 19 O -0.56 -10.84 15.80 5.56 0.09 -10.75 16 20 C -0.11 -1.41 2.95 -90.71 -0.27 -1.68 16 21 H 0.12 1.59 8.14 -51.93 -0.42 1.17 16 22 C -0.10 -1.09 5.27 -25.20 -0.13 -1.22 16 23 C -0.59 -5.07 7.31 38.24 0.28 -4.79 16 24 S 2.39 26.59 6.10 -107.50 -0.66 25.94 16 25 O -0.94 -13.24 18.14 -57.73 -1.05 -14.29 16 26 O -0.94 -13.55 18.15 -57.73 -1.05 -14.60 16 27 C -0.59 -6.66 6.60 37.77 0.25 -6.41 16 28 H 0.27 7.20 5.76 -40.82 -0.24 6.96 16 29 H 0.02 0.41 7.58 -51.93 -0.39 0.02 16 30 H 0.07 1.72 6.80 -51.93 -0.35 1.37 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 1.28 7.58 -51.93 -0.39 0.89 16 39 H 0.42 7.77 7.07 -40.82 -0.29 7.48 16 40 H 0.10 1.09 7.72 -51.93 -0.40 0.69 16 41 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.14 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.14 1.01 8.14 -51.94 -0.42 0.59 16 44 H 0.15 1.59 8.14 -51.93 -0.42 1.17 16 45 H 0.14 1.50 7.88 -51.93 -0.41 1.09 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -32.09 361.37 -10.22 -42.31 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -7.11 Total: 9.82 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -0.83 Total: -12.26 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.02 Total: -49.13 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -2.01 Total: -39.64 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.09 Total: 17.51 kcal Atomic # 16 Polarization: 26.59 SS G_CDS: -0.66 Total: 25.94 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.09 -10.22 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024537052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.774 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds