Wall clock time and date at job start Tue Mar 31 2020 04:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99944 * 2 1 4 4 H 1.48504 * 109.46823 * 269.99267 * 3 2 1 5 5 H 1.48493 * 109.47370 * 29.99327 * 3 2 1 6 6 H 1.48499 * 109.47007 * 149.99836 * 3 2 1 7 7 C 1.38812 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00118 * 164.44739 * 7 2 1 9 9 N 1.36939 * 120.00239 * 344.44089 * 7 2 1 10 10 C 1.46927 * 120.63153 * 330.09871 * 9 7 2 11 11 C 1.53188 * 108.77708 * 233.58592 * 10 9 7 12 12 C 1.53045 * 109.30764 * 305.36292 * 11 10 9 13 13 C 1.53035 * 109.54075 * 61.36703 * 12 11 10 14 14 C 1.46919 * 120.63208 * 150.07047 * 9 7 2 15 15 H 1.08997 * 109.70798 * 246.27518 * 14 9 7 16 16 C 1.53002 * 109.58519 * 6.63018 * 14 9 7 17 17 N 1.46503 * 109.47258 * 299.11741 * 16 14 9 18 18 C 1.34770 * 120.00100 * 180.02562 * 17 16 14 19 19 O 1.21285 * 119.99910 * 0.02562 * 18 17 16 20 20 C 1.50696 * 120.00119 * 180.02562 * 18 17 16 21 21 H 1.08999 * 110.01104 * 301.37732 * 20 18 17 22 22 C 1.53881 * 110.06738 * 62.78334 * 20 18 17 23 23 C 1.54166 * 108.70079 * 166.49780 * 22 20 18 24 24 S 1.83532 * 105.11363 * 332.10480 * 23 22 20 25 25 O 1.42106 * 109.49110 * 248.76387 * 24 23 22 26 26 O 1.42102 * 109.39204 * 115.41664 * 24 23 22 27 27 C 1.55045 * 110.03145 * 179.97438 * 20 18 17 28 28 H 0.96999 * 119.99593 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.58922 * 113.79061 * 10 9 7 30 30 H 1.09011 * 109.70180 * 353.44098 * 10 9 7 31 31 H 1.09000 * 109.50076 * 185.41369 * 11 10 9 32 32 H 1.08998 * 109.49936 * 65.31302 * 11 10 9 33 33 H 1.08994 * 109.46080 * 301.34081 * 12 11 10 34 34 H 1.09006 * 109.44394 * 181.37967 * 12 11 10 35 35 H 1.08993 * 109.49947 * 178.68080 * 13 12 11 36 36 H 1.09004 * 109.52607 * 58.59940 * 13 12 11 37 37 H 1.09004 * 109.47171 * 179.11857 * 16 14 9 38 38 H 1.08995 * 109.47103 * 59.11946 * 16 14 9 39 39 H 0.97002 * 119.99747 * 0.02562 * 17 16 14 40 40 H 1.09001 * 109.64354 * 286.34758 * 22 20 18 41 41 H 1.08997 * 109.64696 * 46.64558 * 22 20 18 42 42 H 1.09000 * 110.32121 * 90.99395 * 23 22 20 43 43 H 1.09004 * 110.31472 * 213.08402 * 23 22 20 44 44 H 1.09004 * 110.78936 * 316.49537 * 27 20 18 45 45 H 1.08999 * 110.78863 * 79.76532 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6998 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0606 -1.2194 -0.2502 9 7 1.3632 -2.3662 0.3192 10 6 0.2242 -2.3597 1.2472 11 6 0.4941 -3.3705 2.3662 12 6 0.7953 -4.7388 1.7503 13 6 2.0468 -4.6418 0.8749 14 6 1.7944 -3.6453 -0.2610 15 1 1.0163 -4.0312 -0.9194 16 6 3.0842 -3.4383 -1.0576 17 7 2.8391 -2.4882 -2.1455 18 6 3.8388 -2.1517 -2.9844 19 8 4.9413 -2.6358 -2.8389 20 6 3.5868 -1.1740 -4.1031 21 1 2.7956 -1.5471 -4.7534 22 6 3.1927 0.1974 -3.5270 23 6 3.2745 1.2481 -4.6521 24 16 4.5439 0.6084 -5.8130 25 8 5.6946 1.4408 -5.7632 26 8 3.9348 0.3133 -7.0625 27 6 4.8865 -0.9547 -4.9195 28 1 -0.4849 0.8401 -0.0004 29 1 -0.6839 -2.6395 0.7131 30 1 0.1044 -1.3643 1.6750 31 1 -0.3837 -3.4457 3.0081 32 1 1.3494 -3.0407 2.9559 33 1 -0.0505 -5.0568 1.1408 34 1 0.9636 -5.4654 2.5453 35 1 2.2741 -5.6217 0.4554 36 1 2.8879 -4.3003 1.4783 37 1 3.4109 -4.3912 -1.4741 38 1 3.8587 -3.0449 -0.3993 39 1 1.9572 -2.1014 -2.2621 40 1 2.1747 0.1534 -3.1399 41 1 3.8772 0.4675 -2.7229 42 1 2.3124 1.3385 -5.1564 43 1 3.5811 2.2128 -4.2476 44 1 5.7450 -0.8418 -4.2573 45 1 5.0458 -1.7739 -5.6207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024537057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:58 Heat of formation + Delta-G solvation = -91.335388 kcal Electronic energy + Delta-G solvation = -28065.078151 eV Core-core repulsion = 24210.156636 eV Total energy + Delta-G solvation = -3854.921514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -39.72257 -37.93509 -37.08623 -36.13415 -35.68428 -34.32527 -33.18341 -30.90793 -30.09291 -29.96831 -26.73761 -25.50198 -24.44125 -22.35641 -22.19186 -20.78582 -19.76857 -19.16612 -18.89590 -17.54867 -16.89758 -16.51179 -15.86398 -15.65769 -15.52158 -15.35314 -14.65097 -14.40416 -14.10815 -14.08597 -13.63399 -13.53160 -13.38632 -12.92510 -12.64707 -12.44181 -12.30175 -12.22570 -12.14278 -12.08035 -12.02066 -11.69791 -11.31415 -11.13177 -11.01337 -10.88265 -10.76309 -10.64290 -10.39736 -10.33878 -10.23919 -10.09494 -9.67765 -9.55573 -9.34948 -8.70745 -8.38535 -6.79768 -5.96562 -3.41507 -0.01780 2.41899 2.93174 3.15807 3.30521 3.33726 3.48116 3.63290 3.98961 4.22402 4.29698 4.59515 4.63473 4.81186 4.84344 5.11494 5.20018 5.26183 5.39850 5.41165 5.55715 5.59000 5.60460 5.69880 5.86712 5.90195 5.95589 6.05404 6.08382 6.20616 6.28579 6.32133 6.51231 6.61888 6.65116 6.76767 6.87065 7.01746 7.28304 7.54628 7.65974 8.06623 8.27264 8.65932 9.03245 9.65787 10.24059 11.10054 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015826 B = 0.004307 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.780697 B = 6500.080677 C = 7708.036391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.009 3.991 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.071 0.929 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.133 3.867 17 N -0.689 5.689 18 C 0.522 3.478 19 O -0.555 6.555 20 C -0.108 4.108 21 H 0.117 0.883 22 C -0.111 4.111 23 C -0.581 4.581 24 S 2.379 3.621 25 O -0.941 6.941 26 O -0.940 6.940 27 C -0.563 4.563 28 H 0.254 0.746 29 H 0.018 0.982 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.416 0.584 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.148 0.852 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.032 -3.427 -4.982 6.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.191 4.191 3 Si 0.710 3.290 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.088 0.912 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.009 3.991 17 N -0.340 5.340 18 C 0.306 3.694 19 O -0.434 6.434 20 C -0.131 4.131 21 H 0.135 0.865 22 C -0.150 4.150 23 C -0.711 4.711 24 S 2.564 3.436 25 O -0.938 6.938 26 O -0.937 6.937 27 C -0.693 4.693 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.254 0.746 40 H 0.131 0.869 41 H 0.109 0.891 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.166 0.834 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.063 -3.224 -5.732 7.255 hybrid contribution -0.439 0.827 0.899 1.298 sum 2.625 -2.397 -4.833 6.000 Atomic orbital electron populations 1.70011 1.05112 1.25553 1.53386 1.25019 0.95101 0.97933 1.01022 0.86674 0.79604 0.84361 0.78323 1.20464 1.21667 1.20477 1.19209 0.92456 0.84267 1.42235 0.91162 1.44079 1.36419 1.01442 1.49280 1.20754 0.88471 0.97820 0.88170 1.22192 1.00011 0.96461 0.99698 1.21360 0.97571 0.97382 0.98197 1.21938 0.98251 0.98299 0.98228 1.20726 0.93192 0.88514 0.92230 0.95008 1.21335 0.98419 0.91184 0.88156 1.45994 1.14092 1.44903 1.28997 1.19782 0.84887 0.82092 0.82665 1.90658 1.23718 1.55440 1.73609 1.21968 0.96660 0.97033 0.97453 0.86454 1.21996 1.07019 0.88984 0.96969 1.30492 1.17869 1.09297 1.13396 1.09321 0.77600 0.79088 0.77596 1.93608 1.47386 1.65222 1.87575 1.93610 1.77410 1.84331 1.38359 1.30527 1.05649 1.20397 1.12704 0.93539 0.96361 0.89743 0.93517 0.92831 0.92867 0.93697 0.93029 0.92077 0.92530 0.91402 0.74590 0.86867 0.89109 0.84287 0.84328 0.83406 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.42 11.24 55.49 0.62 -21.80 16 2 C 0.01 0.20 4.94 -17.43 -0.09 0.12 16 3 Si 0.88 18.97 29.58 -169.99 -5.03 13.94 16 4 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.25 -5.69 7.06 -15.06 -0.11 -5.80 16 8 H 0.07 1.62 5.81 -52.49 -0.30 1.31 16 9 N -0.59 -12.32 2.98 -164.78 -0.49 -12.81 16 10 C 0.17 3.65 5.28 -3.71 -0.02 3.63 16 11 C -0.14 -2.52 6.08 -26.61 -0.16 -2.68 16 12 C -0.11 -1.65 5.88 -26.69 -0.16 -1.81 16 13 C -0.13 -1.99 5.37 -26.61 -0.14 -2.13 16 14 C 0.16 2.83 3.00 -67.60 -0.20 2.62 16 15 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 16 C 0.13 2.27 4.42 -4.04 -0.02 2.25 16 17 N -0.69 -11.41 3.80 -60.29 -0.23 -11.64 16 18 C 0.52 8.40 7.14 -10.99 -0.08 8.32 16 19 O -0.55 -10.50 15.78 5.55 0.09 -10.41 16 20 C -0.11 -1.35 2.96 -90.23 -0.27 -1.61 16 21 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 22 C -0.11 -1.43 5.70 -25.66 -0.15 -1.57 16 23 C -0.58 -6.07 7.29 37.77 0.28 -5.79 16 24 S 2.38 27.07 6.14 -107.50 -0.66 26.41 16 25 O -0.94 -13.87 18.15 -57.71 -1.05 -14.92 16 26 O -0.94 -13.10 18.15 -57.71 -1.05 -14.15 16 27 C -0.56 -6.33 6.18 38.24 0.24 -6.10 16 28 H 0.25 6.32 8.31 -40.82 -0.34 5.98 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 2.03 6.16 -51.92 -0.32 1.71 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.29 7.39 -51.93 -0.38 0.90 16 39 H 0.42 7.04 7.45 -40.82 -0.30 6.73 16 40 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.09 1.27 8.09 -51.93 -0.42 0.85 16 42 H 0.14 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.14 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.15 1.75 7.64 -51.93 -0.40 1.36 16 45 H 0.14 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 363.27 15.07 5.47 5.47 Total: -1.00 -30.95 363.27 -10.37 -41.32 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -7.18 Total: 9.13 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -0.87 Total: -10.55 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.10 Total: -46.25 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -2.01 Total: -39.48 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Atomic # 16 Polarization: 27.07 SS G_CDS: -0.66 Total: 26.41 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.95 -10.37 -41.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024537057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.014 kcal (2) G-P(sol) polarization free energy of solvation -30.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds