Wall clock time and date at job start Tue Mar 31 2020 04:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86802 * 119.99997 * 2 1 4 4 H 1.48500 * 109.47273 * 274.19485 * 3 2 1 5 5 H 1.48498 * 109.46941 * 34.19403 * 3 2 1 6 6 H 1.48499 * 109.47185 * 154.19034 * 3 2 1 7 7 C 1.38805 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99830 * 29.76844 * 7 2 1 9 9 N 1.36937 * 120.00594 * 209.76826 * 7 2 1 10 10 C 1.46932 * 120.62549 * 34.38294 * 9 7 2 11 11 C 1.53193 * 108.89135 * 126.34852 * 10 9 7 12 12 C 1.53348 * 109.15164 * 54.57488 * 11 10 9 13 13 C 1.53040 * 109.60818 * 298.71141 * 12 11 10 14 14 C 1.46924 * 120.63450 * 214.41086 * 9 7 2 15 15 H 1.09001 * 109.59010 * 113.80037 * 14 9 7 16 16 C 1.52999 * 109.58575 * 353.51137 * 14 9 7 17 17 N 1.46496 * 109.47026 * 59.82269 * 16 14 9 18 18 C 1.34774 * 120.00036 * 179.97438 * 17 16 14 19 19 O 1.21287 * 120.00146 * 0.02562 * 18 17 16 20 20 C 1.50699 * 120.00073 * 180.02562 * 18 17 16 21 21 H 1.08999 * 110.01349 * 58.62542 * 20 18 17 22 22 C 1.53880 * 110.02829 * 180.02562 * 20 18 17 23 23 C 1.54164 * 108.70635 * 166.47061 * 22 20 18 24 24 S 1.82922 * 105.08462 * 332.09417 * 23 22 20 25 25 O 1.42099 * 109.35348 * 115.52164 * 24 23 22 26 26 O 1.42103 * 109.34714 * 248.72179 * 24 23 22 27 27 C 1.55048 * 110.02964 * 297.19535 * 20 18 17 28 28 H 0.97009 * 120.00113 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.58524 * 246.19926 * 10 9 7 30 30 H 1.08997 * 109.58898 * 6.48479 * 10 9 7 31 31 H 1.08999 * 109.49548 * 174.65806 * 11 10 9 32 32 H 1.09007 * 109.49587 * 294.75319 * 11 10 9 33 33 H 1.08998 * 109.42023 * 178.67856 * 12 11 10 34 34 H 1.08997 * 109.42277 * 58.75130 * 12 11 10 35 35 H 1.09002 * 109.50171 * 301.42437 * 13 12 11 36 36 H 1.09000 * 109.50054 * 181.32616 * 13 12 11 37 37 H 1.09004 * 109.46901 * 179.82839 * 16 14 9 38 38 H 1.09005 * 109.47029 * 299.82301 * 16 14 9 39 39 H 0.97004 * 119.99938 * 0.02562 * 17 16 14 40 40 H 1.09000 * 109.64517 * 286.32681 * 22 20 18 41 41 H 1.09005 * 109.64485 * 46.75061 * 22 20 18 42 42 H 1.09002 * 110.31531 * 90.99186 * 23 22 20 43 43 H 1.08997 * 110.32297 * 213.08380 * 23 22 20 44 44 H 1.08999 * 110.78841 * 316.54340 * 27 20 18 45 45 H 1.09003 * 110.78997 * 80.00392 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4089 2.0977 -1.3963 5 1 1.4947 2.6254 0.7868 6 1 3.5891 1.4163 0.6096 7 6 2.0102 -1.2021 0.0005 8 1 1.5771 -2.0759 -0.4635 9 7 3.2440 -1.2801 0.5893 10 6 3.5519 -0.4906 1.7897 11 6 4.0722 -1.4307 2.8817 12 6 5.2580 -2.2327 2.3320 13 6 4.7987 -3.0780 1.1417 14 6 4.2853 -2.1543 0.0325 15 1 5.1074 -1.5476 -0.3472 16 6 3.6976 -2.9917 -1.1052 17 7 3.1908 -2.1032 -2.1539 18 6 2.6253 -2.6223 -3.2617 19 8 2.5356 -3.8250 -3.3902 20 6 2.1044 -1.7084 -4.3408 21 1 2.9092 -1.0748 -4.7136 22 6 1.5098 -2.5380 -5.4924 23 6 0.6910 -1.6026 -6.4041 24 16 0.1198 -0.2521 -5.3106 25 8 0.7053 0.9729 -5.7298 26 8 -1.2883 -0.3454 -5.1434 27 6 0.9521 -0.8327 -3.7846 28 1 -0.4851 0.8401 -0.0004 29 1 4.3141 0.2518 1.5531 30 1 2.6492 0.0108 2.1387 31 1 4.3928 -0.8451 3.7433 32 1 3.2783 -2.1149 3.1812 33 1 5.6466 -2.8863 3.1130 34 1 6.0412 -1.5467 2.0095 35 1 3.9981 -3.7468 1.4578 36 1 5.6373 -3.6650 0.7672 37 1 4.4724 -3.6373 -1.5189 38 1 2.8813 -3.6038 -0.7216 39 1 3.2628 -1.1413 -2.0513 40 1 2.3144 -2.9974 -6.0665 41 1 0.8594 -3.3135 -5.0876 42 1 1.3200 -1.2044 -7.2003 43 1 -0.1607 -2.1358 -6.8264 44 1 0.2723 -1.4289 -3.1759 45 1 1.3461 0.0089 -3.2149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024537059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:09 Heat of formation + Delta-G solvation = -83.277640 kcal Electronic energy + Delta-G solvation = -28253.630391 eV Core-core repulsion = 24399.058287 eV Total energy + Delta-G solvation = -3854.572104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -39.70443 -38.13584 -36.91832 -35.97758 -35.60474 -34.35407 -33.10858 -31.22661 -30.77238 -29.84249 -26.45875 -25.62445 -24.57458 -22.62190 -22.17658 -20.78327 -19.86116 -19.29026 -18.72861 -17.43792 -16.81893 -16.45884 -15.94192 -15.68694 -15.48694 -15.16918 -14.91076 -14.60446 -14.14479 -13.83606 -13.68440 -13.51903 -13.48144 -13.22406 -12.67081 -12.44268 -12.29406 -12.14406 -12.05050 -11.99812 -11.87727 -11.74109 -11.70394 -11.37887 -11.08304 -10.87739 -10.79017 -10.65774 -10.57014 -10.33438 -10.26304 -9.85822 -9.74984 -9.50697 -9.31620 -8.64228 -8.36515 -6.96359 -6.14381 -3.47812 0.12238 2.57003 3.01449 3.23858 3.38934 3.42681 3.52918 3.74089 4.08399 4.42566 4.48023 4.54405 4.65812 4.74290 4.84816 4.93456 5.12879 5.24489 5.26543 5.38816 5.46568 5.49099 5.62955 5.69965 5.72447 5.82817 5.91765 6.00326 6.08634 6.11093 6.15131 6.18947 6.37413 6.39513 6.44835 6.54890 6.71669 6.76637 6.95962 7.03226 7.86193 8.08008 8.25058 8.68638 8.82712 9.58087 10.02085 10.98998 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015154 B = 0.004812 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.294039 B = 5817.044060 C = 7092.513672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.044 3.956 3 Si 0.819 3.181 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.247 1.247 7 C -0.272 4.272 8 H 0.086 0.914 9 N -0.599 5.599 10 C 0.142 3.858 11 C -0.139 4.139 12 C -0.108 4.108 13 C -0.127 4.127 14 C 0.159 3.841 15 H 0.035 0.965 16 C 0.135 3.865 17 N -0.687 5.687 18 C 0.527 3.473 19 O -0.557 6.557 20 C -0.110 4.110 21 H 0.114 0.886 22 C -0.093 4.093 23 C -0.595 4.595 24 S 2.386 3.614 25 O -0.941 6.941 26 O -0.936 6.936 27 C -0.568 4.568 28 H 0.264 0.736 29 H 0.029 0.971 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.411 0.589 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.154 0.846 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.866 -3.518 -6.588 10.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.158 4.158 3 Si 0.646 3.354 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.171 1.171 7 C -0.400 4.400 8 H 0.104 0.896 9 N -0.324 5.324 10 C 0.016 3.984 11 C -0.178 4.178 12 C -0.146 4.146 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.052 0.948 16 C 0.011 3.989 17 N -0.337 5.337 18 C 0.311 3.689 19 O -0.437 6.437 20 C -0.133 4.133 21 H 0.132 0.868 22 C -0.132 4.132 23 C -0.724 4.724 24 S 2.569 3.431 25 O -0.938 6.938 26 O -0.933 6.933 27 C -0.698 4.698 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.248 0.752 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.153 0.847 43 H 0.157 0.843 44 H 0.172 0.828 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.033 -3.469 -6.862 10.420 hybrid contribution 0.833 0.995 0.353 1.345 sum 7.866 -2.474 -6.508 10.505 Atomic orbital electron populations 1.69989 1.05926 1.26885 1.49367 1.25381 0.94797 0.97126 0.98495 0.87895 0.82687 0.86404 0.78429 1.21514 1.22008 1.17134 1.18821 0.91083 0.95388 1.34735 0.89610 1.44369 1.10999 1.50103 1.26924 1.21444 0.98467 0.92349 0.86105 1.22125 0.97808 0.99476 0.98430 1.21409 0.97732 0.98256 0.97156 1.21913 1.00109 0.98155 0.96493 1.20797 0.91223 0.91428 0.91280 0.94762 1.21283 0.98131 0.92330 0.87123 1.45896 1.58775 1.11516 1.17475 1.19723 0.78077 0.88265 0.82803 1.90661 1.58106 1.15139 1.79781 1.21960 0.98268 0.97502 0.95534 0.86833 1.21693 1.00649 0.97509 0.93304 1.30534 1.11248 1.17482 1.13116 1.09168 0.76408 0.77500 0.79987 1.93604 1.79393 1.40175 1.80635 1.93615 1.27611 1.87191 1.84908 1.30661 1.09492 1.11001 1.18655 0.92573 0.95291 0.91754 0.93148 0.91980 0.93202 0.92839 0.91659 0.92681 0.92390 0.91098 0.75182 0.88713 0.88492 0.84743 0.84349 0.82825 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.98 13.97 55.49 0.78 -23.20 16 2 C 0.04 1.09 4.95 -17.44 -0.09 1.01 16 3 Si 0.82 18.64 26.64 -169.99 -4.53 14.11 16 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.25 -5.28 4.54 56.52 0.26 -5.02 16 7 C -0.27 -6.35 7.10 -15.06 -0.11 -6.45 16 8 H 0.09 2.21 6.24 -52.49 -0.33 1.88 16 9 N -0.60 -12.04 2.60 -164.77 -0.43 -12.47 16 10 C 0.14 2.74 4.34 -3.71 -0.02 2.73 16 11 C -0.14 -2.25 6.11 -26.45 -0.16 -2.41 16 12 C -0.11 -1.52 5.89 -26.53 -0.16 -1.68 16 13 C -0.13 -1.86 5.38 -26.61 -0.14 -2.00 16 14 C 0.16 2.67 3.01 -67.60 -0.20 2.46 16 15 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 16 C 0.14 2.27 4.45 -4.04 -0.02 2.25 16 17 N -0.69 -11.58 3.84 -60.29 -0.23 -11.81 16 18 C 0.53 8.64 7.14 -10.99 -0.08 8.57 16 19 O -0.56 -10.54 15.81 5.55 0.09 -10.45 16 20 C -0.11 -1.41 2.96 -90.23 -0.27 -1.68 16 21 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 22 C -0.09 -1.01 5.24 -25.66 -0.13 -1.14 16 23 C -0.59 -5.49 7.26 37.77 0.27 -5.22 16 24 S 2.39 31.94 6.11 -107.50 -0.66 31.28 16 25 O -0.94 -15.22 18.15 -57.71 -1.05 -16.26 16 26 O -0.94 -16.10 18.15 -57.71 -1.05 -17.14 16 27 C -0.57 -8.28 6.62 38.24 0.25 -8.02 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.03 0.57 6.37 -51.93 -0.33 0.24 16 30 H 0.06 1.38 6.14 -51.93 -0.32 1.06 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.36 7.43 -51.93 -0.39 0.97 16 39 H 0.41 7.05 7.36 -40.82 -0.30 6.75 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.10 1.14 7.69 -51.93 -0.40 0.75 16 42 H 0.13 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.14 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.15 2.48 8.10 -51.93 -0.42 2.06 16 45 H 0.15 2.31 8.14 -51.93 -0.42 1.89 16 LS Contribution 357.92 15.07 5.39 5.39 Total: -1.00 -32.68 357.92 -9.78 -42.47 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -7.26 Total: 9.68 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -0.84 Total: -11.59 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 0.12 Total: -47.48 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -2.01 Total: -43.85 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -4.53 Total: 14.11 kcal Atomic # 16 Polarization: 31.94 SS G_CDS: -0.66 Total: 31.28 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.68 -9.78 -42.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024537059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.811 kcal (2) G-P(sol) polarization free energy of solvation -32.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds